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All interfaces > All interologs > Interface groups > group123 > 6AZ3_O_8

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_O
6AZ3_8
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
O:8 [LYS] 8:17 [U] 2.98 8:66 [A] sugar:SC 55.5
O:8 [LYS] 8:18 [U] 4.01 8:64 [A] 55.5
O:10 [LYS] 8:67 [G] 3.31 8:16 [C] 69.2
O:10 [LYS] 8:68 [G] 3.27 8:111 [U] 69.2
O:13 [PHE] 8:13 [A] 2.86 base:BB 32.6
O:13 [PHE] 8:17 [U] 3.19 8:66 [A] 32.6
O:13 [PHE] 8:67 [G] 3.31 8:16 [C] 32.6
O:13 [PHE] 8:68 [G] 2.73 8:111 [U] 32.6
O:13 [PHE] 8:69 [C] 4.78 8:110 [G] 32.6
O:14 [LYS] 8:13 [A] 4.39 27.2
O:14 [LYS] 8:68 [G] 3.6 8:111 [U] 27.2
O:14 [LYS] 8:69 [C] 3.24 8:110 [G] 27.2
O:15 [ARG] 8:13 [A] 4.76 53.7
O:16 [PHE] 8:13 [A] 2.62 base:BB 32.6
O:16 [PHE] 8:16 [C] 3.55 8:67 [G] 32.6
O:17 [GLN] 8:13 [A] 4.8 46.3
O:18 [VAL] 8:12 [C] 4.26 63.6
O:18 [VAL] 8:13 [A] 3.48 63.6
O:18 [VAL] 8:15 [A] 4.99 63.6
O:18 [VAL] 8:16 [C] 3.48 8:67 [G] 63.6
O:19 [LYS] 8:12 [C] 3.73 9.1
O:20 [TYR] 8:12 [C] 3.41 base/AA stacks 43.5
O:21 [ARG] 8:11 [C] 4.33 8:112 [G] 83.7
O:21 [ARG] 8:12 [C] 3.15 base:BB 83.7
O:21 [ARG] 8:15 [A] 3.55 base:SC 83.7
O:21 [ARG] 8:16 [C] 4.87 8:67 [G] 83.7
O:21 [ARG] 8:60 [A] 4.39 8:22 [U] 83.7
O:21 [ARG] 8:112 [G] 3.25 8:11 [C] 83.7
O:21 [ARG] 8:113 [C] 4.93 8:10 [A] 83.7
O:22 [ARG] 8:7 [A] 4.86 8:116 [U] 98.1
O:22 [ARG] 8:8 [C] 2.85 8:115 [G] 98.1
O:22 [ARG] 8:9 [G] 2.64 8:114 [C] 98.1
O:22 [ARG] 8:10 [A] 4.42 8:113 [C] 98.1
O:24 [ARG] 8:15 [A] 3.46 base:SC 86.7
O:24 [ARG] 8:16 [C] 3.17 8:67 [G] 86.7
O:25 [GLU] 8:60 [A] 4.22 8:22 [U] 70.4
O:27 [LYS] 8:7 [A] 3.7 8:116 [U] 78.4
O:27 [LYS] 8:8 [C] 3.95 8:115 [G] 78.4
O:27 [LYS] 8:9 [G] 4.4 8:114 [C] 78.4
O:28 [THR] 8:9 [G] 3.09 8:114 [C] 99.0
O:30 [TYR] 8:9 [G] 4.92 8:114 [C] 96.7
O:30 [TYR] 8:10 [A] 2.97 8:113 [C] 96.7
O:30 [TYR] 8:12 [C] 3.78 96.7
O:33 [ARG] 8:8 [C] 4.91 8:115 [G] 98.8
O:33 [ARG] 8:9 [G] 2.49 8:114 [C] sugar:SC 98.8
O:33 [ARG] 8:10 [A] 2.98 8:113 [C] 98.8
O:50 [ARG] 8:8 [C] 2.59 8:115 [G] sugar:SC 98.4
O:50 [ARG] 8:9 [G] 4.08 8:114 [C] 98.4
O:52 [VAL] 8:7 [A] 4.34 8:116 [U] 97.5
O:52 [VAL] 8:8 [C] 3.64 8:115 [G] 97.5
O:54 [ARG] 8:7 [A] 3.34 8:116 [U] 98.2
O:54 [ARG] 8:8 [C] 2.95 8:115 [G] 98.2
O:54 [ARG] 8:9 [G] 4.56 8:114 [C] 98.2
O:56 [THR] 8:7 [A] 4.7 8:116 [U] 84.3
O:56 [THR] 8:28 [C] 3.37 8:55 [U] 84.3
O:56 [THR] 8:29 [A] 3.28 8:54 [U] 84.3
O:57 [ASN] 8:29 [A] 3.03 8:54 [U] 78.4
O:57 [ASN] 8:30 [C] 3.45 8:53 [G] 78.4
O:57 [ASN] 8:31 [C] 4.02 8:50 [G] 78.4
O:57 [ASN] 8:50 [G] 3.93 8:31 [C] 78.4
O:57 [ASN] 8:51 [A] 2.63 8:52 [A] base:BB 78.4
O:58 [LYS] 8:28 [C] 3.78 8:55 [U] 68.0
O:58 [LYS] 8:29 [A] 4.59 8:54 [U] 68.0
O:58 [LYS] 8:51 [A] 3.39 8:52 [A] 68.0
O:59 [ASP] 8:27 [A] 5.0 58.0
O:59 [ASP] 8:28 [C] 3.24 8:55 [U] 58.0
O:61 [ILE] 8:6 [U] 3.72 8:117 [A] 46.6
O:61 [ILE] 8:7 [A] 3.55 8:116 [U] 46.6
O:63 [GLN] 8:7 [A] 2.88 8:116 [U] sugar:SC 93.2
O:63 [GLN] 8:8 [C] 3.42 8:115 [G] sugar:SC 93.2
O:63 [GLN] 8:117 [A] 4.85 8:6 [U] 93.2
O:65 [VAL] 8:8 [C] 3.37 8:115 [G] 80.0
O:68 [LYS] 8:9 [G] 4.72 8:114 [C] 3.0
O:68 [LYS] 8:10 [A] 4.33 8:113 [C] 3.0
O:69 [ILE] 8:10 [A] 2.35 8:113 [C] sugar:BB 29.6
O:70 [VAL] 8:9 [G] 3.48 8:114 [C] base:BB 1.6
O:70 [VAL] 8:10 [A] 3.91 8:113 [C] 1.6
O:70 [VAL] 8:114 [C] 4.63 8:9 [G] 1.6
O:70 [VAL] 8:115 [G] 3.73 8:8 [C] 1.6
O:71 [GLY] 8:9 [G] 3.28 8:114 [C] 94.9
O:71 [GLY] 8:10 [A] 3.92 8:113 [C] 94.9
O:71 [GLY] 8:115 [G] 3.81 8:8 [C] 94.9
O:72 [ASP] 8:8 [C] 2.82 8:115 [G] sugar:SC 98.9
O:72 [ASP] 8:9 [G] 3.04 8:114 [C] sugar:BB 98.9
O:72 [ASP] 8:115 [G] 3.03 8:8 [C] base:BB 98.9
O:72 [ASP] 8:116 [U] 3.57 8:7 [A] 98.9
O:73 [GLU] 8:116 [U] 3.62 8:7 [A] 46.4
O:74 [VAL] 8:7 [A] 4.15 8:116 [U] 76.4
O:74 [VAL] 8:8 [C] 4.68 8:115 [G] 76.4
O:74 [VAL] 8:116 [U] 2.96 8:7 [A] sugar:BB 76.4
O:74 [VAL] 8:117 [A] 3.56 8:6 [U] 76.4
O:76 [MET] 8:117 [A] 4.73 8:6 [U] 44.7
O:77 [ALA] 8:117 [A] 3.37 8:6 [U] sugar:BB 65.6
O:77 [ALA] 8:118 [C] 4.89 8:5 [G] 65.6
O:79 [TYR] 8:6 [U] 4.8 8:117 [A] 51.9
O:79 [TYR] 8:117 [A] 4.12 8:6 [U] 51.9
O:79 [TYR] 8:118 [C] 3.27 8:5 [G] sugar:SC 51.9
O:81 [HIS] 8:118 [C] 4.7 8:5 [G] 50.9
O:91 [GLY] 8:50 [G] 4.33 8:31 [C] 64.1
O:93 [THR] 8:49 [U] 3.59 8:32 [A] 59.1
O:93 [THR] 8:50 [G] 4.32 8:31 [C] 59.1
O:93 [THR] 8:51 [A] 4.96 8:52 [A] 59.1
O:94 [ASN] 8:49 [U] 3.27 8:32 [A] 94.0
O:94 [ASN] 8:50 [G] 3.5 8:31 [C] 94.0
O:95 [TYR] 8:48 [G] 4.66 8:33 [U] 60.7
O:95 [TYR] 8:49 [U] 2.66 8:32 [A] 60.7
O:96 [ALA] 8:49 [U] 4.74 8:32 [A] 77.8
O:157 [ALA] 8:47 [U] 4.27 8:34 [A] 29.6
O:158 [ARG] 8:45 [U] 4.56 8:39 [G] 51.2
O:158 [ARG] 8:46 [U] 3.35 51.2
O:158 [ARG] 8:47 [U] 3.54 8:34 [A] 51.2
O:160 [THR] 8:38 [C] 3.88 8:43 [G] 62.6
O:160 [THR] 8:46 [U] 4.31 62.6
O:160 [THR] 8:47 [U] 3.36 8:34 [A] 62.6
O:161 [THR] 8:37 [C] 2.66 sugar:BB 57.3
O:161 [THR] 8:38 [C] 3.32 8:43 [G] 57.3
O:161 [THR] 8:39 [G] 4.9 8:45 [U] 57.3
O:162 [GLY] 8:37 [C] 3.33 81.4
O:162 [GLY] 8:47 [U] 4.98 8:34 [A] 81.4
O:162 [GLY] 8:48 [G] 4.01 8:33 [U] 81.4
O:163 [ALA] 8:47 [U] 3.77 8:34 [A] 72.1
O:163 [ALA] 8:48 [G] 3.53 8:33 [U] 72.1
O:164 [ARG] 8:47 [U] 4.54 8:34 [A] 70.6
O:164 [ARG] 8:48 [G] 2.82 8:33 [U] 70.6
O:164 [ARG] 8:49 [U] 2.82 8:32 [A] 70.6
O:165 [VAL] 8:48 [G] 4.84 8:33 [U] 64.6
O:187 [PRO] 8:37 [C] 3.81 sugar:BB 82.8
O:187 [PRO] 8:38 [C] 4.9 8:43 [G] 82.8
O:189 [TYR] 8:38 [C] 4.38 8:43 [G] 55.7
O:191 [LYS] 8:39 [G] 3.79 8:45 [U] 29.3
O:200 [VAL] 8:37 [C] 4.82 29.9
O:204 [ARG] 8:36 [C] 3.22 base:SC 87.6
O:204 [ARG] 8:37 [C] 3.29 87.6
O:204 [ARG] 8:48 [G] 4.06 8:33 [U] 87.6
O:204 [ARG] 8:49 [U] 4.53 8:32 [A] 87.6
O:209 [HIS] 8:35 [U] 4.14 87.2
O:209 [HIS] 8:36 [C] 3.39 87.2
O:209 [HIS] 8:48 [G] 3.9 8:33 [U] 87.2
O:209 [HIS] 8:49 [U] 2.83 8:32 [A] 87.2
O:210 [VAL] 8:49 [U] 3.71 8:32 [A] 86.0
O:210 [VAL] 8:50 [G] 3.71 8:31 [C] 86.0
O:213 [TYR] 8:33 [U] 3.71 8:48 [G] sugar:SC 48.7
O:213 [TYR] 8:34 [A] 4.47 8:47 [U] 48.7
O:213 [TYR] 8:35 [U] 3.28 base/AA stacks 48.7
O:213 [TYR] 8:49 [U] 3.68 8:32 [A] 48.7
O:216 [GLN] 8:35 [U] 3.37 5.5
O:230 [VAL] 8:32 [A] 3.51 8:49 [U] 43.6
O:230 [VAL] 8:50 [G] 4.04 8:31 [C] 43.6
O:230 [VAL] 8:51 [A] 3.43 8:52 [A] 43.6
O:230 [VAL] 8:52 [A] 3.48 8:51 [A] 43.6
O:231 [GLN] 8:32 [A] 3.74 8:49 [U] 40.1
O:231 [GLN] 8:33 [U] 4.66 8:48 [G] 40.1
O:231 [GLN] 8:49 [U] 2.92 8:32 [A] sugar:SC 40.1
O:231 [GLN] 8:50 [G] 3.12 8:31 [C] sugar:SC 40.1
O:231 [GLN] 8:51 [A] 4.86 8:52 [A] 40.1
O:232 [PHE] 8:49 [U] 3.23 8:32 [A] 68.6
O:232 [PHE] 8:50 [G] 3.18 8:31 [C] 68.6
O:232 [PHE] 8:51 [A] 3.63 8:52 [A] 68.6
O:233 [SER] 8:50 [G] 4.18 8:31 [C] 73.6
O:233 [SER] 8:51 [A] 3.4 8:52 [A] 73.6
O:233 [SER] 8:52 [A] 3.62 8:51 [A] 73.6
O:234 [ARG] 8:50 [G] 4.99 8:31 [C] 0.0
O:234 [ARG] 8:51 [A] 2.46 8:52 [A] 0.0
O:234 [ARG] 8:52 [A] 3.51 8:51 [A] 0.0
O:235 [TYR] 8:50 [G] 2.97 8:31 [C] 50.2
O:235 [TYR] 8:51 [A] 3.16 8:52 [A] 50.2
O:263 [SER] 8:119 [U] 4.53 8:4 [A] 58.8

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group123 6AZ3_O_8 O: 60s ribosomal protein l5, putative, Leishmania donovani (natural) 8: rRNA 5s, Leishmania donovani (natural) A0A3Q8IJC5 Ribonuclease H-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_N_9 6AZ3_O_8 0.87 0.9 1.8 0.44 Ribonuclease H-like 5S ribosomal RNA compare
6AZ3_O_8 7O9M_P_B 0.73 0.55 2.06 0.1 Ribonuclease H-like compare
6AZ3_O_8 7O7Y_BD_B7 0.92 0.96 0.98 0.67 Ribonuclease H-like 5S ribosomal RNA compare
6AZ3_O_8 7RYG_N_B 0.66 0.84 2.31 0.21 Ribonuclease H-like 5S ribosomal RNA compare
6AZ3_O_8 6S0Z_M_B 0.65 0.84 2.28 0.22 Ribonuclease H-like 5S ribosomal RNA compare
6AZ3_O_8 7OF0_P_B 0.76 0.56 1.99 0.11 Ribonuclease H-like compare
1VQ8_N_9 6AZ3_O_8 0.83 0.9 1.77 0.43 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 6AZ3_O_8 0.59 0.83 2.82 0.2 Ribonuclease H-like 5S ribosomal RNA compare