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All interfaces > All interologs > Interface groups > group123 > 6S0Z_M_B

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6S0Z_M
6S0Z_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
M:4 [LYS] B:28 [C] 3.38 29.0
M:4 [LYS] B:29 [C] 2.32 B:49 [G] 29.0
M:6 [ASP] B:57 [G] 3.62 B:22 [G] 26.5
M:7 [LYS] B:28 [C] 3.62 59.1
M:7 [LYS] B:44 [A] 4.16 B:37 [A] 59.1
M:7 [LYS] B:45 [C] 3.04 59.1
M:8 [ASN] B:5 [G] 4.2 B:110 [C] 12.4
M:9 [LYS] B:57 [G] 3.85 B:22 [G] 0.5
M:9 [LYS] B:58 [C] 2.99 B:21 [G] 0.5
M:11 [ARG] B:5 [G] 4.51 B:110 [C] 50.5
M:11 [ARG] B:6 [U] 2.68 B:109 [G] 50.5
M:12 [LEU] B:6 [U] 4.26 B:109 [G] 5.6
M:15 [HIS] B:6 [U] 4.17 B:109 [G] 47.9
M:15 [HIS] B:7 [G] 3.13 47.9
M:19 [ARG] B:7 [G] 3.02 73.7
M:19 [ARG] B:8 [A] 4.72 B:107 [U] 73.7
M:30 [ARG] B:6 [U] 3.13 B:109 [G] sugar:SC 92.5
M:30 [ARG] B:7 [G] 2.91 92.5
M:32 [ASN] B:5 [G] 3.71 B:110 [C] sugar:SC 34.3
M:32 [ASN] B:6 [U] 3.0 B:109 [G] 34.3
M:34 [TYR] B:4 [G] 4.89 B:111 [C] 33.8
M:34 [TYR] B:5 [G] 3.47 B:110 [C] 33.8
M:34 [TYR] B:6 [U] 4.65 B:109 [G] 33.8
M:34 [TYR] B:26 [C] 4.56 33.8
M:34 [TYR] B:27 [A] 4.79 33.8
M:35 [ARG] B:45 [C] 4.79 78.5
M:35 [ARG] B:46 [A] 2.61 B:32 [U] 78.5
M:35 [ARG] B:47 [C] 4.24 B:31 [G] 78.5
M:36 [SER] B:25 [A] 4.91 98.3
M:36 [SER] B:26 [C] 2.52 98.3
M:36 [SER] B:27 [A] 2.73 98.3
M:37 [ASN] B:26 [C] 4.7 86.1
M:37 [ASN] B:27 [A] 3.4 86.1
M:37 [ASN] B:28 [C] 3.57 86.1
M:37 [ASN] B:29 [C] 3.94 B:49 [G] base:SC 86.1
M:37 [ASN] B:49 [G] 4.32 B:29 [C] 86.1
M:37 [ASN] B:50 [A] 4.13 B:51 [A] 86.1
M:38 [LYS] B:50 [A] 3.17 B:51 [A] 60.0
M:39 [HIS] B:25 [A] 4.74 77.7
M:39 [HIS] B:26 [C] 4.96 77.7
M:41 [TYR] B:25 [A] 3.65 61.1
M:41 [TYR] B:26 [C] 3.57 61.1
M:43 [GLN] B:5 [G] 3.01 B:110 [C] base:SC, base:SC 91.5
M:43 [GLN] B:6 [U] 4.26 B:109 [G] 91.5
M:43 [GLN] B:110 [C] 4.57 B:5 [G] 91.5
M:43 [GLN] B:111 [C] 4.53 B:4 [G] 91.5
M:45 [ILE] B:6 [U] 3.09 B:109 [G] 83.0
M:47 [ASP] B:6 [U] 4.81 B:109 [G] 74.4
M:47 [ASP] B:7 [G] 4.66 74.4
M:50 [GLY] B:7 [G] 4.1 49.9
M:50 [GLY] B:109 [G] 2.65 B:6 [U] base:BB 49.9
M:50 [GLY] B:110 [C] 3.69 B:5 [G] 49.9
M:51 [VAL] B:109 [G] 4.72 B:6 [U] 27.2
M:51 [VAL] B:110 [C] 3.99 B:5 [G] 27.2
M:52 [THR] B:5 [G] 4.33 B:110 [C] 80.3
M:52 [THR] B:110 [C] 3.32 B:5 [G] sugar:BB 80.3
M:52 [THR] B:111 [C] 2.94 B:4 [G] 80.3
M:55 [GLN] B:111 [C] 3.83 B:4 [G] 74.7
M:55 [GLN] B:112 [A] 3.48 B:3 [U] 74.7
M:59 [LYS] B:24 [C] 3.44 sugar:SC 24.3
M:59 [LYS] B:25 [A] 3.47 24.3
M:59 [LYS] B:113 [G] 4.7 B:2 [C] 24.3
M:66 [THR] B:49 [G] 4.33 B:29 [C] 49.0
M:67 [ALA] B:49 [G] 3.63 B:29 [C] 37.7
M:68 [THR] B:48 [A] 3.21 B:30 [U] 34.5
M:68 [THR] B:49 [G] 3.65 B:29 [C] 34.5
M:69 [LYS] B:48 [A] 4.07 B:30 [U] 76.0
M:69 [LYS] B:49 [G] 3.87 B:29 [C] base:SC 76.0
M:69 [LYS] B:50 [A] 4.32 B:51 [A] 76.0
M:70 [VAL] B:47 [C] 4.39 B:31 [G] 40.8
M:70 [VAL] B:48 [A] 3.03 B:30 [U] 40.8
M:95 [ASP] B:7 [G] 4.81 96.8
M:99 [TYR] B:46 [A] 4.46 B:32 [U] 46.7
M:100 [LEU] B:45 [C] 3.12 48.2
M:100 [LEU] B:46 [A] 4.35 B:32 [U] 48.2
M:102 [HIS] B:35 [C] 2.69 base:SC 89.2
M:102 [HIS] B:36 [C] 3.46 B:42 [G] 89.2
M:102 [HIS] B:46 [A] 3.91 B:32 [U] 89.2
M:102 [HIS] B:47 [C] 4.19 B:31 [G] 89.2
M:103 [GLY] B:46 [A] 4.4 B:32 [U] 98.3
M:103 [GLY] B:47 [C] 3.36 B:31 [G] 98.3
M:104 [ARG] B:47 [C] 3.07 B:31 [G] 77.7

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group123 6S0Z_M_B M: 50s ribosomal protein l18, Staphylococcus aureus (natural) B: 5s ribosomal RNA, Staphylococcus aureus (natural) W8TRE0 Ribonuclease H-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_M_B 7RYG_N_B 0.74 0.9 1.66 0.41 Ribonuclease H-like 5S ribosomal RNA compare
6S0Z_M_B 7OF0_P_B 0.64 0.54 2.86 0.16 Ribonuclease H-like compare
6S0Z_M_B 7O9M_P_B 0.64 0.53 2.99 0.15 Ribonuclease H-like compare
6S0Z_M_B 7O7Y_BD_B7 0.57 0.83 2.02 0.16 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 6S0Z_M_B 0.70 0.83 1.98 0.24 Ribonuclease H-like 5S ribosomal RNA compare
6AZ3_O_8 6S0Z_M_B 0.65 0.84 2.28 0.22 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 6S0Z_M_B 0.71 0.83 2.22 0.24 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 6S0Z_M_B 0.82 0.89 1.29 0.51 Ribonuclease H-like 5S ribosomal RNA compare