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All interfaces > All interologs > Interface groups > group123 > 7O7Y_BD_B7

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_BD
7O7Y_B7
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BD:8 [LYS] B7:15 [C] 3.1 B7:64 [G] sugar:SC 70.95
BD:8 [LYS] B7:16 [A] 3.88 B7:62 [U] 70.95
BD:10 [LYS] B7:65 [G] 3.91 B7:14 [C] 60.05
BD:10 [LYS] B7:66 [G] 3.34 B7:109 [U] 60.05
BD:13 [PHE] B7:11 [A] 2.55 base:BB 39.71
BD:13 [PHE] B7:14 [C] 4.42 B7:65 [G] 39.71
BD:13 [PHE] B7:15 [C] 3.41 B7:64 [G] 39.71
BD:13 [PHE] B7:65 [G] 3.47 B7:14 [C] 39.71
BD:13 [PHE] B7:66 [G] 3.0 B7:109 [U] 39.71
BD:13 [PHE] B7:67 [C] 4.75 B7:108 [G] 39.71
BD:14 [LYS] B7:11 [A] 4.22 40.84
BD:14 [LYS] B7:66 [G] 3.25 B7:109 [U] 40.84
BD:14 [LYS] B7:67 [C] 3.06 B7:108 [G] 40.84
BD:16 [TYR] B7:11 [A] 2.9 base:BB 49.18
BD:16 [TYR] B7:14 [C] 3.68 B7:65 [G] 49.18
BD:17 [GLN] B7:11 [A] 4.92 71.62
BD:18 [VAL] B7:10 [C] 4.04 66.09
BD:18 [VAL] B7:11 [A] 3.51 66.09
BD:18 [VAL] B7:14 [C] 3.64 B7:65 [G] 66.09
BD:19 [LYS] B7:10 [C] 4.13 60.73
BD:20 [PHE] B7:10 [C] 3.3 base/AA stacks 44.11
BD:21 [ARG] B7:7 [G] 3.17 B7:112 [U] 86.53
BD:21 [ARG] B7:8 [G] 2.87 B7:111 [C] base:SC 86.53
BD:21 [ARG] B7:9 [C] 3.58 B7:110 [G] 86.53
BD:21 [ARG] B7:10 [C] 2.96 base:BB 86.53
BD:21 [ARG] B7:13 [A] 4.1 86.53
BD:21 [ARG] B7:110 [G] 2.8 B7:9 [C] base:SC 86.53
BD:21 [ARG] B7:111 [C] 4.24 B7:8 [G] 86.53
BD:22 [ARG] B7:6 [C] 3.13 B7:113 [G] 97.09
BD:22 [ARG] B7:7 [G] 2.88 B7:112 [U] 97.09
BD:22 [ARG] B7:8 [G] 4.35 B7:111 [C] 97.09
BD:24 [ARG] B7:13 [A] 3.33 base:SC 89.95
BD:24 [ARG] B7:14 [C] 3.35 B7:65 [G] 89.95
BD:25 [GLU] B7:58 [A] 4.59 B7:20 [U] 74.95
BD:27 [LYS] B7:4 [U] 4.99 B7:115 [A] 75.87
BD:27 [LYS] B7:5 [A] 3.24 B7:114 [U] 75.87
BD:27 [LYS] B7:6 [C] 4.11 B7:113 [G] 75.87
BD:27 [LYS] B7:7 [G] 4.43 B7:112 [U] 75.87
BD:28 [THR] B7:7 [G] 2.64 B7:112 [U] 99.0
BD:30 [TYR] B7:7 [G] 4.77 B7:112 [U] 94.37
BD:30 [TYR] B7:8 [G] 2.59 B7:111 [C] 94.37
BD:30 [TYR] B7:10 [C] 3.38 base:SC 94.37
BD:33 [ARG] B7:6 [C] 3.93 B7:113 [G] 98.92
BD:33 [ARG] B7:7 [G] 2.73 B7:112 [U] 98.92
BD:33 [ARG] B7:8 [G] 3.05 B7:111 [C] 98.92
BD:50 [ARG] B7:6 [C] 2.7 B7:113 [G] sugar:SC 98.63
BD:50 [ARG] B7:7 [G] 3.76 B7:112 [U] 98.63
BD:52 [ILE] B7:5 [A] 4.12 B7:114 [U] 91.48
BD:52 [ILE] B7:6 [C] 3.62 B7:113 [G] 91.48
BD:54 [ARG] B7:5 [A] 3.36 B7:114 [U] 98.76
BD:54 [ARG] B7:6 [C] 2.65 B7:113 [G] 98.76
BD:54 [ARG] B7:7 [G] 4.58 B7:112 [U] 98.76
BD:55 [VAL] B7:27 [G] 4.66 B7:52 [C] 51.17
BD:56 [THR] B7:5 [A] 4.9 B7:114 [U] 88.52
BD:56 [THR] B7:26 [C] 2.75 B7:53 [U] 88.52
BD:56 [THR] B7:27 [G] 3.65 B7:52 [C] 88.52
BD:57 [ASN] B7:27 [G] 3.22 B7:52 [C] 88.62
BD:57 [ASN] B7:28 [C] 2.95 B7:51 [G] 88.62
BD:57 [ASN] B7:29 [C] 3.95 B7:48 [G] 88.62
BD:57 [ASN] B7:48 [G] 4.37 B7:29 [C] 88.62
BD:57 [ASN] B7:49 [A] 3.0 B7:50 [A] base:BB 88.62
BD:58 [ARG] B7:26 [C] 3.96 B7:53 [U] 65.11
BD:58 [ARG] B7:27 [G] 2.58 B7:52 [C] base:SC, base:SC, base:SC 65.11
BD:58 [ARG] B7:28 [C] 3.21 B7:51 [G] 65.11
BD:58 [ARG] B7:49 [A] 3.32 B7:50 [A] base/AA stacks 65.11
BD:58 [ARG] B7:51 [G] 3.49 B7:28 [C] base:SC 65.11
BD:58 [ARG] B7:52 [C] 4.62 B7:27 [G] 65.11
BD:59 [ASP] B7:26 [C] 3.25 B7:53 [U] 65.43
BD:61 [ILE] B7:4 [U] 4.07 B7:115 [A] 68.57
BD:61 [ILE] B7:5 [A] 3.48 B7:114 [U] 68.57
BD:63 [GLN] B7:5 [A] 2.6 B7:114 [U] base:SC, sugar:SC 98.29
BD:63 [GLN] B7:6 [C] 3.88 B7:113 [G] 98.29
BD:63 [GLN] B7:115 [A] 4.49 B7:4 [U] 98.29
BD:65 [ALA] B7:6 [C] 4.66 B7:113 [G] 78.36
BD:68 [ARG] B7:7 [G] 4.78 B7:112 [U] 18.4
BD:68 [ARG] B7:8 [G] 4.48 B7:111 [C] 18.4
BD:69 [ILE] B7:8 [G] 2.7 B7:111 [C] sugar:BB 52.9
BD:70 [GLU] B7:7 [G] 3.16 B7:112 [U] base:BB 21.68
BD:70 [GLU] B7:8 [G] 4.03 B7:111 [C] 21.68
BD:70 [GLU] B7:113 [G] 3.61 B7:6 [C] 21.68
BD:71 [GLY] B7:7 [G] 3.38 B7:112 [U] 96.3
BD:71 [GLY] B7:8 [G] 3.9 B7:111 [C] 96.3
BD:71 [GLY] B7:113 [G] 4.22 B7:6 [C] 96.3
BD:72 [ASP] B7:6 [C] 2.44 B7:113 [G] sugar:SC 98.95
BD:72 [ASP] B7:7 [G] 3.07 B7:112 [U] sugar:BB 98.95
BD:72 [ASP] B7:113 [G] 2.82 B7:6 [C] base:BB 98.95
BD:72 [ASP] B7:114 [U] 3.6 B7:5 [A] 98.95
BD:73 [MET] B7:113 [G] 3.8 B7:6 [C] 42.55
BD:73 [MET] B7:114 [U] 3.52 B7:5 [A] 42.55
BD:74 [ILE] B7:5 [A] 4.4 B7:114 [U] 74.32
BD:74 [ILE] B7:6 [C] 4.75 B7:113 [G] 74.32
BD:74 [ILE] B7:114 [U] 2.91 B7:5 [A] sugar:BB 74.32
BD:74 [ILE] B7:115 [A] 3.35 B7:4 [U] 74.32
BD:77 [ALA] B7:115 [A] 3.44 B7:4 [U] 70.75
BD:79 [TYR] B7:4 [U] 4.89 B7:115 [A] 66.12
BD:79 [TYR] B7:115 [A] 4.18 B7:4 [U] 66.12
BD:79 [TYR] B7:116 [G] 3.57 B7:3 [C] sugar:SC 66.12
BD:81 [HIS] B7:116 [G] 4.55 B7:3 [C] 61.36
BD:91 [GLY] B7:48 [G] 3.46 B7:29 [C] 82.54
BD:91 [GLY] B7:49 [A] 4.99 B7:50 [A] 82.54
BD:93 [THR] B7:47 [G] 3.35 B7:30 [C] 71.12
BD:93 [THR] B7:48 [G] 4.47 B7:29 [C] 71.12
BD:94 [ASN] B7:47 [G] 3.21 B7:30 [C] 94.63
BD:94 [ASN] B7:48 [G] 2.87 B7:29 [C] 94.63
BD:95 [TYR] B7:46 [C] 4.79 B7:31 [G] 75.78
BD:95 [TYR] B7:47 [G] 2.69 B7:30 [C] 75.78
BD:147 [ASP] B7:6 [C] 4.39 B7:113 [G] 97.65
BD:147 [ASP] B7:7 [G] 4.19 B7:112 [U] 97.65
BD:150 [LEU] B7:45 [U] 4.84 B7:32 [A] 72.93
BD:151 [ALA] B7:45 [U] 3.7 B7:32 [A] 44.47
BD:152 [ARG] B7:44 [C] 3.39 74.03
BD:152 [ARG] B7:45 [U] 3.03 B7:32 [A] 74.03
BD:154 [THR] B7:36 [C] 3.7 B7:41 [G] 78.15
BD:154 [THR] B7:37 [G] 4.77 B7:43 [U] 78.15
BD:154 [THR] B7:44 [C] 4.99 78.15
BD:154 [THR] B7:45 [U] 3.81 B7:32 [A] 78.15
BD:155 [THR] B7:35 [U] 2.84 sugar:BB 72.63
BD:155 [THR] B7:36 [C] 3.3 B7:41 [G] sugar:BB 72.63
BD:155 [THR] B7:45 [U] 4.8 B7:32 [A] 72.63
BD:156 [GLY] B7:35 [U] 3.23 81.11
BD:156 [GLY] B7:45 [U] 4.38 B7:32 [A] 81.11
BD:156 [GLY] B7:46 [C] 3.6 B7:31 [G] 81.11
BD:157 [ASN] B7:45 [U] 3.5 B7:32 [A] 78.54
BD:157 [ASN] B7:46 [C] 3.41 B7:31 [G] 78.54
BD:158 [LYS] B7:45 [U] 4.57 B7:32 [A] 75.52
BD:158 [LYS] B7:46 [C] 2.66 B7:31 [G] 75.52
BD:158 [LYS] B7:47 [G] 3.2 B7:30 [C] 75.52
BD:159 [VAL] B7:46 [C] 4.95 B7:31 [G] 69.87
BD:181 [PRO] B7:35 [U] 4.44 78.03
BD:183 [TYR] B7:36 [C] 3.71 B7:41 [G] 39.18
BD:198 [HIS] B7:34 [C] 3.61 74.08
BD:198 [HIS] B7:35 [U] 3.53 sugar:SC 74.08
BD:203 [ASN] B7:33 [U] 4.03 87.17
BD:203 [ASN] B7:34 [C] 2.79 base:SC 87.17
BD:203 [ASN] B7:46 [C] 4.83 B7:31 [G] 87.17
BD:203 [ASN] B7:47 [G] 4.08 B7:30 [C] 87.17
BD:204 [VAL] B7:47 [G] 3.52 B7:30 [C] 87.64
BD:204 [VAL] B7:48 [G] 3.69 B7:29 [C] 87.64
BD:207 [TYR] B7:31 [G] 3.81 B7:46 [C] sugar:SC 80.77
BD:207 [TYR] B7:32 [A] 4.84 B7:45 [U] 80.77
BD:207 [TYR] B7:33 [U] 3.29 base/AA stacks 80.77
BD:207 [TYR] B7:47 [G] 3.63 B7:30 [C] 80.77
BD:210 [TYR] B7:33 [U] 3.66 3.02
BD:221 [LYS] B7:30 [C] 3.24 B7:47 [G] 44.69
BD:221 [LYS] B7:31 [G] 4.33 B7:46 [C] 44.69
BD:221 [LYS] B7:48 [G] 4.23 B7:29 [C] 44.69
BD:221 [LYS] B7:49 [A] 4.14 B7:50 [A] 44.69
BD:222 [GLN] B7:30 [C] 4.72 B7:47 [G] 70.93
BD:222 [GLN] B7:31 [G] 4.45 B7:46 [C] 70.93
BD:222 [GLN] B7:47 [G] 2.88 B7:30 [C] base:SC, base:SC, sugar:SC 70.93
BD:222 [GLN] B7:48 [G] 2.48 B7:29 [C] sugar:BB 70.93
BD:222 [GLN] B7:49 [A] 4.01 B7:50 [A] 70.93
BD:223 [PHE] B7:47 [G] 3.64 B7:30 [C] 91.75
BD:223 [PHE] B7:48 [G] 3.82 B7:29 [C] 91.75
BD:223 [PHE] B7:49 [A] 3.7 B7:50 [A] 91.75
BD:224 [SER] B7:48 [G] 4.7 B7:29 [C] 87.43
BD:224 [SER] B7:49 [A] 3.18 B7:50 [A] 87.43
BD:224 [SER] B7:50 [A] 2.36 B7:49 [A] 87.43
BD:225 [GLN] B7:49 [A] 2.93 B7:50 [A] 28.77
BD:225 [GLN] B7:50 [A] 3.41 B7:49 [A] 28.77
BD:226 [TYR] B7:47 [G] 4.63 B7:30 [C] 58.42
BD:226 [TYR] B7:48 [G] 2.46 B7:29 [C] 58.42
BD:226 [TYR] B7:49 [A] 3.41 B7:50 [A] 58.42
BD:253 [TYR] B7:116 [G] 3.0 B7:3 [C] 0.0
BD:253 [TYR] B7:117 [G] 2.51 B7:2 [U] 0.0
BD:254 [GLU] B7:117 [G] 4.83 B7:2 [U] 12.63
BD:255 [LYS] B7:116 [G] 2.69 B7:3 [C] 1.16
BD:255 [LYS] B7:117 [G] 3.17 B7:2 [U] 1.16
BD:256 [LYS] B7:117 [G] 3.08 B7:2 [U] 34.55
BD:256 [LYS] B7:118 [C] 3.57 B7:1 [GTP] 34.55
BD:258 [LYS] B7:119 [U] 4.62 45.54
BD:259 [ARG] B7:118 [C] 4.87 B7:1 [GTP] 0.5
BD:259 [ARG] B7:119 [U] 2.94 0.5
BD:259 [ARG] B7:120 [U] 2.47 sugar:SC base/AA stacks 0.5
BD:261 [VAL] B7:119 [U] 3.57 2.57
BD:261 [VAL] B7:120 [U] 4.03 2.57
BD:262 [LYS] B7:120 [U] 4.13 4.76
BD:263 [LYS] B7:1 [GTP] 3.05 B7:118 [C] 1.16
BD:264 [LYS] B7:1 [GTP] 3.44 B7:118 [C] 37.75
BD:265 [ARG] B7:1 [GTP] 3.35 B7:118 [C] 58.17
BD:265 [ARG] B7:2 [U] 4.46 B7:117 [G] 58.17
BD:266 [TRP] B7:1 [GTP] 3.17 B7:118 [C] sugar:BB 5.43
BD:266 [TRP] B7:22 [A] 3.39 base/AA stacks 5.43
BD:266 [TRP] B7:119 [U] 3.35 sugar:SC 5.43
BD:267 [ASN] B7:1 [GTP] 2.91 B7:118 [C] sugar:SC 51.37
BD:267 [ASN] B7:2 [U] 3.27 B7:117 [G] 51.37
BD:267 [ASN] B7:59 [G] 3.2 B7:19 [C] sugar:SC 51.37
BD:268 [ARG] B7:59 [G] 2.78 B7:19 [C] sugar:BB 6.17
BD:268 [ARG] B7:60 [G] 3.17 B7:18 [C] 6.17
BD:268 [ARG] B7:61 [G] 4.39 B7:17 [C] 6.17
BD:269 [PRO] B7:59 [G] 4.99 B7:19 [C] 2.99
BD:269 [PRO] B7:60 [G] 3.44 B7:18 [C] 2.99
BD:269 [PRO] B7:61 [G] 4.71 B7:17 [C] 2.99
BD:270 [LYS] B7:60 [G] 3.05 B7:18 [C] 76.38
BD:270 [LYS] B7:61 [G] 3.46 B7:17 [C] 76.38
BD:270 [LYS] B7:109 [U] 3.71 B7:66 [G] 76.38
BD:270 [LYS] B7:110 [G] 2.97 B7:9 [C] 76.38
BD:271 [MET] B7:60 [G] 3.74 B7:18 [C] 48.13
BD:271 [MET] B7:61 [G] 2.65 B7:17 [C] 48.13
BD:271 [MET] B7:62 [U] 4.54 B7:16 [A] 48.13
BD:273 [LEU] B7:107 [G] 3.68 B7:68 [C] 2.78
BD:273 [LEU] B7:108 [G] 3.62 B7:67 [C] 2.78
BD:276 [LYS] B7:61 [G] 4.67 B7:17 [C] 77.86
BD:276 [LYS] B7:62 [U] 3.52 B7:16 [A] 77.86
BD:276 [LYS] B7:108 [G] 4.43 B7:67 [C] 77.86
BD:276 [LYS] B7:109 [U] 4.66 B7:66 [G] 77.86
BD:277 [LYS] B7:106 [G] 5.0 B7:69 [U] 59.22
BD:277 [LYS] B7:107 [G] 3.33 B7:68 [C] 59.22
BD:279 [ARG] B7:61 [G] 2.92 B7:17 [C] sugar:SC 53.56
BD:279 [ARG] B7:62 [U] 3.72 B7:16 [A] 53.56
BD:280 [VAL] B7:63 [C] 3.62 64.08
BD:283 [LYS] B7:62 [U] 4.51 B7:16 [A] 80.54
BD:283 [LYS] B7:63 [C] 3.33 80.54
BD:284 [LYS] B7:63 [C] 3.37 37.58

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group123 7O7Y_BD_B7 BD: Ribosomal_l18_c domain-containing protein, Oryctolagus cuniculus (natural) B7: 5s rRNA, Oryctolagus cuniculus (natural) G1SYJ6 Ribonuclease H-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_N_9 7O7Y_BD_B7 0.86 0.91 1.71 0.37 Ribonuclease H-like 5S ribosomal RNA compare
7O7Y_BD_B7 7OF0_P_B 0.69 0.56 1.89 0.11 Ribonuclease H-like compare
7O7Y_BD_B7 7RYG_N_B 0.60 0.84 2.24 0.18 Ribonuclease H-like 5S ribosomal RNA compare
7O7Y_BD_B7 7O9M_P_B 0.71 0.55 1.95 0.1 Ribonuclease H-like compare
6S0Z_M_B 7O7Y_BD_B7 0.57 0.83 2.02 0.16 Ribonuclease H-like 5S ribosomal RNA compare
6AZ3_O_8 7O7Y_BD_B7 0.92 0.96 0.98 0.67 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 7O7Y_BD_B7 0.84 0.91 1.74 0.38 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 7O7Y_BD_B7 0.57 0.83 2.76 0.14 Ribonuclease H-like 5S ribosomal RNA compare