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All interfaces > All interologs > Interface groups > group123 > 7O9M_P_B

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O9M_P
7O9M_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
P:85 [ARG] B:1624 [C] 4.5 B:1611 [G] 0.0
P:85 [ARG] B:1639 [U] 4.94 B:1629 [A] 0.0
P:85 [ARG] B:1640 [A] 3.77 B:1628 [C] 0.0
P:86 [THR] B:1623 [G] 3.35 B:1612 [C] 0.0
P:86 [THR] B:1624 [C] 3.42 B:1611 [G] 0.0
P:87 [GLN] B:1624 [C] 3.68 B:1611 [G] 0.0
P:87 [GLN] B:1625 [A] 2.87 B:1643 [A] base:SC 0.0
P:87 [GLN] B:1626 [C] 2.81 B:1642 [G] base:SC 0.0
P:87 [GLN] B:1643 [A] 4.49 B:1625 [A] 0.0
P:88 [HIS] B:1610 [A] 4.9 0.0
P:88 [HIS] B:1623 [G] 3.35 B:1612 [C] 0.0
P:88 [HIS] B:1624 [C] 4.31 B:1611 [G] 0.0
P:88 [HIS] B:1625 [A] 4.48 B:1643 [A] 0.0
P:88 [HIS] B:1643 [A] 3.4 B:1625 [A] 0.0
P:88 [HIS] B:1644 [G] 2.96 base:SC 0.0
P:89 [HIS] B:1622 [A] 3.45 B:1613 [U] 0.0
P:89 [HIS] B:1623 [G] 3.57 B:1612 [C] 0.0
P:108 [ARG] B:1620 [A] 4.55 0.0
P:108 [ARG] B:1621 [A] 2.96 0.0
P:108 [ARG] B:1622 [A] 4.0 B:1613 [U] 0.0
P:108 [ARG] B:1623 [G] 4.4 B:1612 [C] 0.0
P:109 [GLU] B:1619 [C] 3.36 sugar:SC 0.0
P:109 [GLU] B:1620 [A] 3.09 0.0
P:110 [TRP] B:1620 [A] 3.26 0.0
P:111 [ALA] B:1620 [A] 4.95 0.0
P:113 [LYS] B:1621 [A] 2.78 0.0
P:113 [LYS] B:1622 [A] 4.22 B:1613 [U] 0.0
P:117 [TYR] B:1642 [G] 3.55 B:1626 [C] 0.0
P:117 [TYR] B:1643 [A] 4.4 B:1625 [A] 0.0
P:118 [SER] B:1642 [G] 3.26 B:1626 [C] 0.0
P:120 [ARG] B:1641 [G] 4.71 B:1627 [C] 0.0
P:120 [ARG] B:1642 [G] 3.88 B:1626 [C] 0.0
P:120 [ARG] B:1643 [A] 3.05 B:1625 [A] base:SC 0.0
P:121 [ASN] B:1641 [G] 3.76 B:1627 [C] 0.0
P:121 [ASN] B:1642 [G] 4.45 B:1626 [C] 0.0
P:122 [VAL] B:1640 [A] 4.22 B:1628 [C] 0.0
P:122 [VAL] B:1641 [G] 3.44 B:1627 [C] 0.0
P:151 [TRP] B:1638 [U] 3.32 B:1630 [A] 0.0
P:151 [TRP] B:1639 [U] 3.85 B:1629 [A] 0.0
P:152 [GLU] B:1639 [U] 3.98 B:1629 [A] 0.0
P:155 [SER] B:1639 [U] 3.75 B:1629 [A] 0.0
P:155 [SER] B:1640 [A] 3.99 B:1628 [C] 0.0
P:156 [ASP] B:1639 [U] 3.91 B:1629 [A] 0.0
P:156 [ASP] B:1640 [A] 2.94 B:1628 [C] 0.0
P:157 [SER] B:1640 [A] 3.0 B:1628 [C] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group123 7O9M_P_B P: Mitochondrial ribosomal protein l18, isoform cra_b, Homo sapiens (natural) B: Mt-tRNAval, Homo sapiens (natural) A8K9D2 Ribonuclease H-like ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_N_9 7O9M_P_B 0.66 0.55 1.72 0.1 Ribonuclease H-like compare
7O7Y_BD_B7 7O9M_P_B 0.71 0.55 1.95 0.1 Ribonuclease H-like compare
6S0Z_M_B 7O9M_P_B 0.64 0.53 2.99 0.15 Ribonuclease H-like compare
6AZ3_O_8 7O9M_P_B 0.73 0.55 2.06 0.1 Ribonuclease H-like compare
7O9M_P_B 7RYG_N_B 0.65 0.55 1.98 0.2 Ribonuclease H-like compare
7O9M_P_B 7OF0_P_B 0.94 0.98 0.53 0.95 Ribonuclease H-like compare
1VQ8_N_9 7O9M_P_B 0.65 0.55 1.74 0.1 Ribonuclease H-like compare
4Y4O_1S_1B 7O9M_P_B 0.72 0.53 2.72 0.1 Ribonuclease H-like compare