RNAprotDB

All interfaces > All interologs > Interface groups > group123 > 7OF0_P_B

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7OF0_P
7OF0_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
P:85 [ARG] B:1624 [C] 4.86 B:1611 [G] 0.0
P:85 [ARG] B:1640 [A] 3.65 B:1628 [C] 0.0
P:86 [THR] B:1622 [A] 4.84 B:1613 [U] 0.0
P:86 [THR] B:1623 [G] 2.36 B:1612 [C] 0.0
P:86 [THR] B:1624 [C] 3.77 B:1611 [G] 0.0
P:87 [GLN] B:1623 [G] 4.75 B:1612 [C] 0.0
P:87 [GLN] B:1624 [C] 3.64 B:1611 [G] base/AA stacks 0.0
P:87 [GLN] B:1625 [A] 3.0 B:1643 [A] base:SC, base:SC 0.0
P:87 [GLN] B:1626 [C] 3.08 B:1642 [G] base/AA stacks 0.0
P:87 [GLN] B:1642 [G] 4.8 B:1626 [C] 0.0
P:87 [GLN] B:1643 [A] 3.1 B:1625 [A] base:SC 0.0
P:87 [GLN] B:1644 [G] 4.1 0.0
P:88 [HIS] B:1623 [G] 3.2 B:1612 [C] 0.0
P:88 [HIS] B:1624 [C] 4.54 B:1611 [G] 0.0
P:88 [HIS] B:1643 [A] 3.47 B:1625 [A] 0.0
P:88 [HIS] B:1644 [G] 2.56 base:SC 0.0
P:89 [HIS] B:1621 [A] 4.96 0.0
P:89 [HIS] B:1622 [A] 3.1 B:1613 [U] 0.0
P:89 [HIS] B:1623 [G] 3.2 B:1612 [C] 0.0
P:108 [ARG] B:1621 [A] 4.95 0.0
P:108 [ARG] B:1622 [A] 4.41 B:1613 [U] 0.0
P:110 [TRP] B:1621 [A] 4.83 0.0
P:113 [LYS] B:1621 [A] 4.67 0.0
P:113 [LYS] B:1622 [A] 4.8 B:1613 [U] 0.0
P:117 [TYR] B:1642 [G] 3.17 B:1626 [C] 0.0
P:117 [TYR] B:1643 [A] 3.31 B:1625 [A] 0.0
P:118 [SER] B:1642 [G] 4.07 B:1626 [C] 0.0
P:120 [ARG] B:1641 [G] 4.25 B:1627 [C] 0.0
P:120 [ARG] B:1642 [G] 2.8 B:1626 [C] base/AA stacks 0.0
P:120 [ARG] B:1643 [A] 2.84 B:1625 [A] base:SC 0.0
P:121 [ASN] B:1641 [G] 3.44 B:1627 [C] 0.0
P:122 [VAL] B:1640 [A] 3.95 B:1628 [C] 0.0
P:122 [VAL] B:1641 [G] 3.45 B:1627 [C] 0.0
P:151 [TRP] B:1638 [U] 3.31 B:1630 [A] 0.0
P:151 [TRP] B:1639 [U] 3.68 B:1629 [A] 0.0
P:152 [GLU] B:1639 [U] 4.43 B:1629 [A] 0.0
P:155 [SER] B:1639 [U] 3.08 B:1629 [A] 0.0
P:155 [SER] B:1640 [A] 2.83 B:1628 [C] 0.0
P:156 [ASP] B:1639 [U] 3.49 B:1629 [A] 0.0
P:156 [ASP] B:1640 [A] 2.81 B:1628 [C] 0.0
P:157 [SER] B:1639 [U] 4.71 B:1629 [A] 0.0
P:157 [SER] B:1640 [A] 2.61 B:1628 [C] 0.0
P:158 [MET] B:1640 [A] 4.97 B:1628 [C] 0.0

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group123 7OF0_P_B P: 39s ribosomal protein l18, mitochondrial, Homo sapiens (natural) B: Mitochondrial tRNAval, Homo sapiens (natural) Q9H0U6 Ribonuclease H-like ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
7O9M_P_B 7OF0_P_B 0.94 0.98 0.53 0.95 Ribonuclease H-like compare
1YHQ_N_9 7OF0_P_B 0.69 0.56 1.79 0.11 Ribonuclease H-like compare
1VQ8_N_9 7OF0_P_B 0.67 0.57 1.81 0.11 Ribonuclease H-like compare
7O7Y_BD_B7 7OF0_P_B 0.69 0.56 1.89 0.11 Ribonuclease H-like compare
6AZ3_O_8 7OF0_P_B 0.76 0.56 1.99 0.11 Ribonuclease H-like compare
7OF0_P_B 7RYG_N_B 0.63 0.56 1.99 0.21 Ribonuclease H-like compare
4Y4O_1S_1B 7OF0_P_B 0.72 0.54 2.33 0.11 Ribonuclease H-like compare
6S0Z_M_B 7OF0_P_B 0.64 0.54 2.86 0.16 Ribonuclease H-like compare