RNAprotDB

All interfaces > All interologs > Interface groups > group123 > 7RYG_N_B

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7RYG_N
7RYG_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
N:3 [GLU] B:57 [A] 4.05 B:22 [G] 68.83
N:3 [GLU] B:58 [C] 4.41 B:21 [U] 68.83
N:4 [LYS] B:27 [A] 4.94 B:53 [U] 47.05
N:4 [LYS] B:28 [C] 2.72 B:52 [G] 47.05
N:4 [LYS] B:44 [A] 4.75 B:37 [U] 47.05
N:4 [LYS] B:45 [C] 3.88 47.05
N:5 [LYS] B:4 [G] 4.54 B:111 [C] 31.96
N:5 [LYS] B:5 [G] 2.32 B:110 [C] 31.96
N:9 [LEU] B:6 [C] 4.45 B:109 [G] 0.0
N:11 [ARG] B:45 [C] 4.65 88.52
N:16 [ARG] B:6 [C] 3.22 B:109 [G] 75.91
N:16 [ARG] B:7 [G] 3.68 B:108 [C] 75.91
N:20 [ARG] B:7 [G] 3.43 B:108 [C] 19.85
N:20 [ARG] B:8 [A] 3.29 B:107 [U] 19.85
N:26 [ARG] B:6 [C] 2.49 B:109 [G] sugar:SC 96.93
N:26 [ARG] B:7 [G] 2.88 B:108 [C] 96.93
N:28 [CYS] B:6 [C] 4.18 B:109 [G] 63.36
N:30 [ASN] B:4 [G] 4.15 B:111 [C] 37.6
N:30 [ASN] B:5 [G] 3.48 B:110 [C] 37.6
N:31 [ARG] B:45 [C] 4.95 82.08
N:31 [ARG] B:46 [U] 2.74 B:32 [A] 82.08
N:31 [ARG] B:47 [C] 3.62 B:31 [G] 82.08
N:32 [THR] B:26 [C] 2.75 B:54 [G] 94.95
N:32 [THR] B:27 [A] 4.0 B:53 [U] 94.95
N:33 [PRO] B:27 [A] 3.12 B:53 [U] 79.65
N:33 [PRO] B:28 [C] 4.89 B:52 [G] 79.65
N:33 [PRO] B:49 [G] 4.77 79.65
N:33 [PRO] B:50 [A] 4.23 79.65
N:34 [ARG] B:25 [C] 4.87 54.89
N:34 [ARG] B:26 [C] 4.13 B:54 [G] 54.89
N:34 [ARG] B:50 [A] 2.75 base/AA stacks 54.89
N:35 [HIS] B:25 [C] 3.12 71.41
N:35 [HIS] B:26 [C] 3.67 B:54 [G] 71.41
N:37 [TYR] B:25 [C] 3.47 57.67
N:37 [TYR] B:26 [C] 3.09 B:54 [G] 57.67
N:39 [GLN] B:5 [G] 3.78 B:110 [C] base:SC, sugar:SC 95.46
N:39 [GLN] B:6 [C] 4.01 B:109 [G] 95.46
N:39 [GLN] B:111 [C] 3.8 B:4 [G] 95.46
N:41 [ILE] B:6 [C] 3.01 B:109 [G] 89.24
N:44 [ASP] B:7 [G] 4.45 B:108 [C] 5.76
N:45 [GLY] B:6 [C] 4.28 B:109 [G] 7.02
N:45 [GLY] B:7 [G] 3.35 B:108 [C] 7.02
N:45 [GLY] B:109 [G] 4.74 B:6 [C] 7.02
N:46 [GLY] B:7 [G] 4.14 B:108 [C] 67.45
N:46 [GLY] B:109 [G] 4.7 B:6 [C] 67.45
N:46 [GLY] B:110 [C] 3.54 B:5 [G] 67.45
N:47 [LYS] B:110 [C] 4.51 B:5 [G] 46.9
N:48 [VAL] B:5 [G] 4.35 B:110 [C] 89.45
N:48 [VAL] B:110 [C] 3.64 B:5 [G] sugar:BB 89.45
N:48 [VAL] B:111 [C] 3.91 B:4 [G] 89.45
N:51 [GLN] B:111 [C] 3.44 B:4 [G] 68.77
N:51 [GLN] B:112 [A] 3.68 B:3 [U] 68.77
N:53 [SER] B:112 [A] 4.55 B:3 [U] 86.26
N:55 [LEU] B:25 [C] 4.64 24.09
N:55 [LEU] B:112 [A] 4.86 B:3 [U] 24.09
N:55 [LEU] B:113 [G] 4.32 B:2 [C] 24.09
N:56 [ASP] B:112 [A] 4.59 B:3 [U] 43.49
N:56 [ASP] B:113 [G] 4.55 B:2 [C] 43.49
N:60 [ARG] B:24 [A] 3.92 sugar:SC 51.41
N:60 [ARG] B:25 [C] 4.46 51.41
N:60 [ARG] B:113 [G] 3.16 B:2 [C] sugar:SC 51.41
N:60 [ARG] B:114 [C] 3.51 B:1 [G] 51.41
N:63 [THR] B:49 [G] 3.31 39.91
N:65 [GLY] B:48 [A] 3.39 B:30 [U] 50.27
N:65 [GLY] B:49 [G] 4.92 50.27
N:66 [ASN] B:48 [A] 3.21 B:30 [U] 73.08
N:66 [ASN] B:49 [G] 4.05 73.08
N:67 [ILE] B:47 [C] 4.23 B:31 [G] 49.14
N:67 [ILE] B:48 [A] 3.55 B:30 [U] 49.14
N:96 [PHE] B:46 [U] 3.98 B:32 [A] 55.93
N:97 [LYS] B:36 [C] 4.68 B:42 [G] 43.77
N:97 [LYS] B:45 [C] 3.52 43.77
N:97 [LYS] B:46 [U] 3.62 B:32 [A] 43.77
N:99 [HIS] B:35 [C] 2.88 sugar:SC 90.3
N:99 [HIS] B:36 [C] 3.39 B:42 [G] 90.3
N:99 [HIS] B:46 [U] 3.46 B:32 [A] 90.3
N:99 [HIS] B:47 [C] 3.92 B:31 [G] 90.3
N:100 [GLY] B:46 [U] 4.36 B:32 [A] 99.0
N:100 [GLY] B:47 [C] 3.46 B:31 [G] 99.0
N:101 [ARG] B:46 [U] 4.98 B:32 [A] 75.79
N:101 [ARG] B:47 [C] 2.98 B:31 [G] 75.79
N:101 [ARG] B:48 [A] 3.98 B:30 [U] 75.79
N:102 [ILE] B:46 [U] 4.91 B:32 [A] 81.38

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group123 7RYG_N_B N: 50s ribosomal protein l18, Acinetobacter baumannii (strain ab0057) (natural) B: 5s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) B7IA23 Ribonuclease H-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_N_9 7RYG_N_B 0.65 0.86 1.69 0.18 Ribonuclease H-like 5S ribosomal RNA compare
7O7Y_BD_B7 7RYG_N_B 0.60 0.84 2.24 0.18 Ribonuclease H-like 5S ribosomal RNA compare
6S0Z_M_B 7RYG_N_B 0.74 0.9 1.66 0.41 Ribonuclease H-like 5S ribosomal RNA compare
6AZ3_O_8 7RYG_N_B 0.66 0.84 2.31 0.21 Ribonuclease H-like 5S ribosomal RNA compare
7O9M_P_B 7RYG_N_B 0.65 0.55 1.98 0.2 Ribonuclease H-like compare
7OF0_P_B 7RYG_N_B 0.63 0.56 1.99 0.21 Ribonuclease H-like compare
1VQ8_N_9 7RYG_N_B 0.63 0.86 1.72 0.18 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 7RYG_N_B 0.86 0.91 1.56 0.43 Ribonuclease H-like 5S ribosomal RNA compare