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All interfaces > All interologs > Interface groups > group124 > 1VQ8_W_0

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Licorice
Surface

RNA

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Licorice
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Chain
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Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_W
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
W:7 [LEU] 0:1086 [A] 4.03 0:1073 [A] 74.8
W:8 [ARG] 0:1085 [C] 3.12 0:1074 [G] 95.0
W:8 [ARG] 0:1086 [A] 3.5 0:1073 [A] 95.0
W:9 [GLY] 0:1085 [C] 4.62 0:1074 [G] 95.8
W:9 [GLY] 0:1086 [A] 2.52 0:1073 [A] 95.8
W:9 [GLY] 0:1087 [G] 3.25 95.8
W:10 [GLU] 0:1068 [C] 3.93 0:1046 [G] 30.8
W:10 [GLU] 0:1087 [G] 3.64 30.8
W:11 [VAL] 0:1068 [C] 3.91 0:1046 [G] 63.9
W:11 [VAL] 0:1085 [C] 4.9 0:1074 [G] 63.9
W:11 [VAL] 0:1086 [A] 3.06 0:1073 [A] 63.9
W:11 [VAL] 0:1087 [G] 3.67 63.9
W:12 [ASN] 0:1067 [A] 2.69 0:1047 [U] sugar:SC 56.9
W:12 [ASN] 0:1068 [C] 3.05 0:1046 [G] 56.9
W:12 [ASN] 0:1084 [C] 3.71 0:1075 [G] 56.9
W:12 [ASN] 0:1085 [C] 4.78 0:1074 [G] 56.9
W:12 [ASN] 0:1086 [A] 3.61 0:1073 [A] 56.9
W:13 [MET] 0:1067 [A] 4.3 0:1047 [U] 52.2
W:13 [MET] 0:1068 [C] 4.63 0:1046 [G] 52.2
W:14 [HIS] 0:1066 [U] 3.22 0:1048 [G] sugar:SC 50.6
W:14 [HIS] 0:1067 [A] 4.51 0:1047 [U] 50.6
W:15 [THR] 0:943 [A] 4.73 19.7
W:15 [THR] 0:1066 [U] 4.68 0:1048 [G] 19.7
W:15 [THR] 0:1067 [A] 2.78 0:1047 [U] 19.7
W:16 [ASP] 0:943 [A] 4.05 41.9
W:16 [ASP] 0:944 [G] 3.71 0:1023 [C] 41.9
W:19 [ASP] 0:943 [A] 2.55 sugar:SC 41.4
W:19 [ASP] 0:944 [G] 4.76 0:1023 [C] 41.4
W:20 [THR] 0:944 [G] 2.69 0:1023 [C] sugar:SC 93.6
W:22 [GLU] 0:1025 [C] 4.2 0:941 [G] 23.5
W:23 [MET] 0:943 [A] 3.33 61.9
W:23 [MET] 0:944 [G] 3.19 0:1023 [C] 61.9
W:23 [MET] 0:1024 [G] 2.52 0:942 [U] sugar:BB 61.9
W:23 [MET] 0:1025 [C] 3.12 0:941 [G] 61.9
W:24 [LEU] 0:1024 [G] 4.36 0:942 [U] 93.9
W:25 [ASN] 0:1024 [G] 4.3 0:942 [U] 66.9
W:25 [ASN] 0:1025 [C] 2.82 0:941 [G] 66.9
W:25 [ASN] 0:1287 [A] 4.77 66.9
W:27 [HIS] 0:1287 [A] 4.2 45.9
W:27 [HIS] 0:1288 [U] 3.48 45.9
W:28 [HIS] 0:1262 [C] 3.1 0:1094 [G] 69.6
W:28 [HIS] 0:1287 [A] 3.24 69.6
W:28 [HIS] 0:1288 [U] 3.21 69.6
W:29 [VAL] 0:1086 [A] 4.06 0:1073 [A] 37.3
W:29 [VAL] 0:1087 [G] 3.68 37.3
W:29 [VAL] 0:1261 [A] 4.28 0:1095 [U] 37.3
W:29 [VAL] 0:1262 [C] 3.25 0:1094 [G] 37.3
W:30 [ASN] 0:1262 [C] 3.06 0:1094 [G] sugar:SC 84.2
W:31 [HIS] 0:1262 [C] 3.88 0:1094 [G] 76.7
W:31 [HIS] 0:1263 [C] 2.68 0:1093 [G] 76.7
W:31 [HIS] 0:1287 [A] 3.37 76.7
W:39 [ASP] 0:945 [U] 3.66 0:1022 [A] sugar:BB 35.6
W:39 [ASP] 0:946 [C] 3.39 0:1021 [G] 35.6
W:40 [ALA] 0:945 [U] 2.59 0:1022 [A] sugar:BB 56.1
W:40 [ALA] 0:946 [C] 3.42 0:1021 [G] 56.1
W:40 [ALA] 0:1022 [A] 4.7 0:945 [U] 56.1
W:40 [ALA] 0:1023 [C] 4.19 0:944 [G] 56.1
W:41 [TYR] 0:945 [U] 4.71 0:1022 [A] 0.2
W:41 [TYR] 0:1023 [C] 3.52 0:944 [G] 0.2
W:41 [TYR] 0:1024 [G] 2.91 0:942 [U] 0.2
W:42 [ARG] 0:945 [U] 4.73 0:1022 [A] 33.1
W:43 [GLY] 0:945 [U] 3.18 0:1022 [A] 92.5
W:43 [GLY] 0:946 [C] 4.33 0:1021 [G] 92.5
W:44 [MET] 0:944 [G] 3.04 0:1023 [C] 95.1
W:44 [MET] 0:945 [U] 3.53 0:1022 [A] 95.1
W:44 [MET] 0:1023 [C] 4.29 0:944 [G] 95.1
W:44 [MET] 0:1024 [G] 5.0 0:942 [U] 95.1
W:47 [LYS] 0:944 [G] 3.44 0:1023 [C] 79.7
W:47 [LYS] 0:945 [U] 3.22 0:1022 [A] 79.7
W:68 [THR] 0:567 [U] 4.98 0:591 [A] 71.3
W:69 [ARG] 0:566 [A] 3.65 0:592 [G] 92.3
W:69 [ARG] 0:567 [U] 2.92 0:591 [A] 92.3
W:69 [ARG] 0:1263 [C] 3.22 0:1093 [G] sugar:SC 92.3
W:69 [ARG] 0:1264 [U] 4.6 0:1092 [A] 92.3
W:71 [GLU] 0:1264 [U] 4.62 0:1092 [A] 53.2
W:71 [GLU] 0:1287 [A] 4.65 53.2
W:73 [LEU] 0:1286 [A] 4.71 0:1270 [U] 28.6
W:73 [LEU] 0:1287 [A] 4.1 28.6
W:73 [LEU] 0:1288 [U] 4.73 28.6
W:74 [GLU] 0:1285 [U] 3.32 0:1271 [A] 0.0
W:74 [GLU] 0:1286 [A] 3.94 0:1270 [U] 0.0
W:75 [GLY] 0:1285 [U] 3.59 0:1271 [A] 80.5
W:75 [GLY] 0:1286 [A] 3.32 0:1270 [U] 80.5
W:76 [ASP] 0:1265 [G] 4.5 0:1091 [U] 45.7
W:76 [ASP] 0:1285 [U] 4.81 0:1271 [A] 45.7
W:108 [ARG] 0:1024 [G] 4.68 0:942 [U] 44.9
W:108 [ARG] 0:1025 [C] 2.65 0:941 [G] 44.9
W:108 [ARG] 0:1026 [C] 3.46 0:940 [G] 44.9
W:108 [ARG] 0:1287 [A] 4.24 44.9
W:113 [SER] 0:1287 [A] 3.57 83.5
W:114 [PRO] 0:1287 [A] 3.77 71.4
W:115 [THR] 0:1287 [A] 4.18 71.3
W:117 [ARG] 0:1262 [C] 4.96 0:1094 [G] 89.8
W:117 [ARG] 0:1263 [C] 2.9 0:1093 [G] 89.8
W:117 [ARG] 0:1264 [U] 2.8 0:1092 [A] 89.8
W:117 [ARG] 0:1287 [A] 3.16 89.8
W:118 [LEU] 0:1262 [C] 2.92 0:1094 [G] sugar:BB 97.9
W:118 [LEU] 0:1263 [C] 3.3 0:1093 [G] 97.9
W:119 [HIS] 0:566 [A] 3.93 0:592 [G] sugar:SC 77.3
W:119 [HIS] 0:567 [U] 3.31 0:591 [A] 77.3
W:119 [HIS] 0:1094 [G] 3.77 0:1262 [C] 77.3
W:119 [HIS] 0:1095 [U] 3.26 0:1261 [A] sugar:SC 77.3
W:119 [HIS] 0:1262 [C] 3.93 0:1094 [G] 77.3
W:119 [HIS] 0:1263 [C] 3.88 0:1093 [G] 77.3
W:120 [PRO] 0:1094 [G] 3.99 0:1262 [C] 95.5
W:120 [PRO] 0:1095 [U] 3.06 0:1261 [A] 95.5
W:120 [PRO] 0:1096 [U] 3.57 0:1259 [A] 95.5
W:120 [PRO] 0:1261 [A] 4.6 0:1095 [U] 95.5
W:120 [PRO] 0:1262 [C] 2.91 0:1094 [G] 95.5
W:120 [PRO] 0:1263 [C] 4.34 0:1093 [G] 95.5
W:121 [PRO] 0:1095 [U] 4.14 0:1261 [A] 95.4
W:121 [PRO] 0:1096 [U] 3.31 0:1259 [A] 95.4
W:121 [PRO] 0:1097 [A] 4.98 95.4
W:122 [ARG] 0:566 [A] 4.91 0:592 [G] 65.8
W:122 [ARG] 0:567 [U] 2.73 0:591 [A] 65.8
W:122 [ARG] 0:568 [G] 2.63 0:590 [A] 65.8
W:122 [ARG] 0:1095 [U] 4.36 0:1261 [A] 65.8
W:122 [ARG] 0:1096 [U] 3.77 0:1259 [A] 65.8
W:123 [GLY] 0:1095 [U] 4.64 0:1261 [A] 62.3
W:123 [GLY] 0:1096 [U] 2.81 0:1259 [A] 62.3
W:124 [GLY] 0:1096 [U] 3.22 0:1259 [A] 98.7
W:124 [GLY] 0:1097 [A] 3.41 98.7
W:125 [HIS] 0:1096 [U] 4.17 0:1259 [A] 58.5
W:125 [HIS] 0:1097 [A] 3.07 58.5
W:125 [HIS] 0:1098 [A] 3.75 0:1258 [G] 58.5
W:127 [GLY] 0:1098 [A] 3.24 0:1258 [G] 81.9
W:128 [VAL] 0:1085 [C] 4.81 0:1074 [G] 74.9
W:128 [VAL] 0:1097 [A] 4.09 74.9
W:128 [VAL] 0:1098 [A] 3.17 0:1258 [G] 74.9
W:129 [LYS] 0:1084 [C] 2.88 0:1075 [G] sugar:SC 92.0
W:129 [LYS] 0:1085 [C] 4.18 0:1074 [G] 92.0
W:129 [LYS] 0:1098 [A] 2.9 0:1258 [G] 92.0
W:129 [LYS] 0:1099 [G] 2.99 0:1257 [C] 92.0
W:154 [ARG] 0:567 [U] 3.62 0:591 [A] 67.0
W:154 [ARG] 0:568 [G] 4.23 0:590 [A] 67.0
W:154 [ARG] 0:588 [G] 2.45 base:SC 67.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group124 1VQ8_W_0 W: 50s ribosomal protein l30p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P14121 Ribosomal protein L30p/L7e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_W_0 4Y4O_13_1A 0.76 0.9 2.49 0.15 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7RYG_Y_A 0.78 0.92 2.64 0.15 Ribosomal protein L30p/L7e compare
1VQ8_W_0 6AZ3_c_1 0.55 0.75 1.77 0.17 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7O7Y_BF_B5 0.65 0.94 1.79 0.21 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7K00_y_a 0.71 0.91 1.84 0.23 Ribosomal protein L30p/L7e compare
1VQ8_W_0 6S0Z_X_A 0.69 0.9 1.68 0.27 Ribosomal protein L30p/L7e compare