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All interfaces > All interologs > Interface groups > group124 > 1VQ8_W_0 vs 7K00_y_a

Interface analysis


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Common contacts -

1VQ8_W
1VQ8_0
7K00_y
7K00_a
Conserved?
W:11 [VAL] 0:1068 [C] y:14 [ILE] a:970 [U] ✔
W:11 [VAL] 0:1086 [A] y:14 [ILE] a:988 [A] ✔
W:11 [VAL] 0:1087 [G] y:14 [ILE] a:989 [G] ✔
W:20 [THR] 0:944 [G] y:23 [THR] a:850 [U] ✔
W:43 [GLY] 0:945 [U] y:46 [GLY] a:851 [C] ✔
W:43 [GLY] 0:946 [C] y:46 [GLY] a:852 [U] ✔
W:27 [HIS] 0:1288 [U] y:30 [ARG] a:1183 [U] ✔
W:28 [HIS] 0:1262 [C] y:31 [ARG] a:1158 [C] ✔
W:28 [HIS] 0:1288 [U] y:31 [ARG] a:1183 [U] ✔
W:44 [MET] 0:944 [G] y:47 [MET] a:850 [U] ✔
W:44 [MET] 0:945 [U] y:47 [MET] a:851 [C] ✔
W:44 [MET] 0:1023 [C] y:47 [MET] a:927 [A] ✔
W:44 [MET] 0:1024 [G] y:47 [MET] a:928 [A] ✔
W:22 [GLU] 0:1025 [C] y:25 [LEU] a:929 [U] ✔
W:12 [ASN] 0:1067 [A] y:15 [GLY] a:969 [G] ✔
W:12 [ASN] 0:1068 [C] y:15 [GLY] a:970 [U] ✔
W:23 [MET] 0:944 [G] y:26 [GLY] a:850 [U] ✔
W:23 [MET] 0:1024 [G] y:26 [GLY] a:928 [A] ✔
W:23 [MET] 0:1025 [C] y:26 [GLY] a:929 [U] ✔
W:9 [GLY] 0:1086 [A] y:12 [SER] a:988 [A] ✔
W:9 [GLY] 0:1087 [G] y:12 [SER] a:989 [G] ✔
W:19 [ASP] 0:943 [A] y:22 [ALA] a:849 [A] ✔
W:19 [ASP] 0:944 [G] y:22 [ALA] a:850 [U] ✔
W:8 [ARG] 0:1086 [A] y:11 [ARG] a:988 [A] ✔
W:47 [LYS] 0:945 [U] y:50 [ALA] a:851 [C] ✔
W:14 [HIS] 0:1066 [U] y:17 [LEU] a:968 [C] ✔
W:40 [ALA] 0:945 [U] y:43 [ALA] a:851 [C] ✔
W:40 [ALA] 0:946 [C] y:43 [ALA] a:852 [U] ✔
W:40 [ALA] 0:1022 [A] y:43 [ALA] a:926 [G] ✔
W:40 [ALA] 0:1023 [C] y:43 [ALA] a:927 [A] ✔
W:41 [TYR] 0:945 [U] y:44 [ILE] a:851 [C] ✔
W:41 [TYR] 0:1023 [C] y:44 [ILE] a:927 [A] ✔
W:41 [TYR] 0:1024 [G] y:44 [ILE] a:928 [A] ✔
W:16 [ASP] 0:944 [G] y:19 [LYS] a:850 [U] ✔
W:30 [ASN] 0:1262 [C] y:33 [GLY] a:1158 [C] ✔
W:13 [MET] 0:1067 [A] y:16 [ARG] a:969 [G] ✔
W:29 [VAL] 0:1086 [A] y:32 [ILE] a:988 [A] ✔
W:29 [VAL] 0:1087 [G] y:32 [ILE] a:989 [G] ✔
W:29 [VAL] 0:1261 [A] y:32 [ILE] a:1157 [G] ✔
W:29 [VAL] 0:1262 [C] y:32 [ILE] a:1158 [C] ✔
W:15 [THR] 0:1066 [U] y:18 [PRO] a:968 [C] ✔
W:15 [THR] 0:1067 [A] y:18 [PRO] a:969 [G] ✔
W:42 [ARG] 0:945 [U] y:45 [ARG] a:851 [C] ✔
W:25 [ASN] 0:1025 [C] y:28 [GLY] a:929 [U] ✔
W:10 [GLU] 0:1087 [G] y:13 [ALA] a:989 [G] ✔
W:12 [ASN] 0:1086 [A] y:15 [GLY] a:988 [A] ❌ 7K00_y_a
W:23 [MET] 0:943 [A] y:26 [GLY] a:849 [A] ❌ 7K00_y_a
W:47 [LYS] 0:944 [G] y:50 [ALA] a:850 [U] ❌ 7K00_y_a
W:14 [HIS] 0:1067 [A] y:17 [LEU] a:969 [G] ❌ 7K00_y_a
W:16 [ASP] 0:943 [A] y:19 [LYS] a:849 [A] ❌ 7K00_y_a
W:24 [LEU] 0:1024 [G] y:27 [LEU] a:928 [A] ❌ 7K00_y_a
W:13 [MET] 0:1068 [C] y:16 [ARG] a:970 [U] ❌ 7K00_y_a
W:15 [THR] 0:943 [A] y:18 [PRO] a:849 [A] ❌ 7K00_y_a
W:25 [ASN] 0:1024 [G] y:28 [GLY] a:928 [A] ❌ 7K00_y_a
W:10 [GLU] 0:1068 [C] y:13 [ALA] a:970 [U] ❌ 7K00_y_a
W:13 [MET] 0:1086 [A] y:16 [ARG] a:988 [A] ❌ 1VQ8_W_0
W:13 [MET] 0:1066 [U] y:16 [ARG] a:968 [C] ❌ 1VQ8_W_0
W:16 [ASP] 0:945 [U] y:19 [LYS] a:851 [C] ❌ 1VQ8_W_0
W:20 [THR] 0:945 [U] y:23 [THR] a:851 [C] ❌ 1VQ8_W_0
W:22 [GLU] 0:1026 [C] y:25 [LEU] a:930 [G] ❌ 1VQ8_W_0
W:22 [GLU] 0:943 [A] y:25 [LEU] a:849 [A] ❌ 1VQ8_W_0
W:24 [LEU] 0:1025 [C] y:27 [LEU] a:929 [U] ❌ 1VQ8_W_0
W:25 [ASN] 0:1026 [C] y:28 [GLY] a:930 [G] ❌ 1VQ8_W_0
W:27 [HIS] 0:1026 [C] y:30 [ARG] a:930 [G] ❌ 1VQ8_W_0
W:28 [HIS] 0:1263 [C] y:31 [ARG] a:1159 [U] ❌ 1VQ8_W_0
W:11 [VAL] 0:1085 [C] y:14 [ILE] a:987 [C] ❌ 7K00_a:987 no longer at interface
W:12 [ASN] 0:1084 [C] y:15 [GLY] a:986 [C] ❌ 7K00_a:986 no longer at interface
W:12 [ASN] 0:1085 [C] y:15 [GLY] a:987 [C] ❌ 7K00_a:987 no longer at interface
W:9 [GLY] 0:1085 [C] y:12 [SER] a:987 [C] ❌ 7K00_a:987 no longer at interface
W:8 [ARG] 0:1085 [C] y:11 [ARG] a:987 [C] ❌ 7K00_a:987 no longer at interface
W:16 [ASP] 0:1016 [U] y:19 [LYS] a:920 [A] ❌ 1VQ8_0:1016 no longer at interface
W:27 [HIS] 0:1289 [C] y:30 [ARG] a:1184 [U] ❌ 1VQ8_0:1289 no longer at interface
W:27 [HIS] 0:1027 [G] y:30 [ARG] a:931 [U] ❌ 1VQ8_0:1027 no longer at interface
W:28 [HIS] 0:1289 [C] y:31 [ARG] a:1184 [U] ❌ 1VQ8_0:1289 no longer at interface
W:31 [HIS] 0:1262 [C] y:34 [HIS] a:1158 [C] ❌ 7K00_y:34 no longer at interface
W:31 [HIS] 0:1263 [C] y:34 [HIS] a:1159 [U] ❌ 7K00_y:34 no longer at interface
W:7 [LEU] 0:1086 [A] y:10 [THR] a:988 [A] ❌ 7K00_y:10 no longer at interface
W:18 [GLN] 0:1067 [A] y:21 [LYS] a:969 [G] ❌ 1VQ8_W:18 no longer at interface
W:18 [GLN] 0:1068 [C] y:21 [LYS] a:970 [U] ❌ 1VQ8_W:18 no longer at interface
W:35 [VAL] 0:1025 [C] y:38 [ARG] a:929 [U] ❌ 1VQ8_W:35 no longer at interface
W:35 [VAL] 0:1026 [C] y:38 [ARG] a:930 [G] ❌ 1VQ8_W:35 no longer at interface
W:35 [VAL] 0:1024 [G] y:38 [ARG] a:928 [A] ❌ 1VQ8_W:35 no longer at interface
W:37 [GLU] 0:1023 [C] y:41 [THR] a:927 [A] ❌ 1VQ8_W:37 no longer at interface
W:38 [THR] 0:945 [U] y:42 [PRO] a:851 [C] ❌ 1VQ8_W:38 no longer at interface
W:38 [THR] 0:946 [C] y:42 [PRO] a:852 [U] ❌ 1VQ8_W:38 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L30p/L7e 0.91 1.84 0.23 0.84 0.9 0.83 0.86 0.71 0.66 0.17 0.50


Other pairs involving 1VQ8_W_0 or 7K00_y_a

Total number of entries: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 7K00_y_a 0.71 0.91 1.82 0.23 Ribosomal protein L30p/L7e compare
1VQ8_W_0 4Y4O_13_1A 0.76 0.9 2.49 0.15 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7RYG_Y_A 0.78 0.92 2.64 0.15 Ribosomal protein L30p/L7e compare
1VQ8_W_0 6AZ3_c_1 0.55 0.75 1.77 0.17 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7O7Y_BF_B5 0.65 0.94 1.79 0.21 Ribosomal protein L30p/L7e compare
1VQ8_W_0 6S0Z_X_A 0.69 0.9 1.68 0.27 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7K00_y_a 0.71 0.91 1.84 0.23 Ribosomal protein L30p/L7e compare
6AZ3_c_1 7K00_y_a 0.70 0.64 2.52 0.23 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 7K00_y_a 0.76 0.96 1.81 0.29 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7K00_y_a 0.76 0.97 0.92 0.43 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare