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All interfaces > All interologs > Interface groups > group124 > 1YHQ_W_0

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_W
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
W:7 [LEU] 0:1086 [A] 4.02 0:1073 [A] 74.8
W:8 [ARG] 0:1085 [C] 3.07 0:1074 [G] 95.0
W:8 [ARG] 0:1086 [A] 3.61 0:1073 [A] 95.0
W:9 [GLY] 0:1085 [C] 4.75 0:1074 [G] 95.8
W:9 [GLY] 0:1086 [A] 2.67 0:1073 [A] 95.8
W:9 [GLY] 0:1087 [G] 3.18 95.8
W:10 [GLU] 0:1068 [C] 3.91 0:1046 [G] 30.8
W:10 [GLU] 0:1087 [G] 3.66 30.8
W:11 [VAL] 0:1068 [C] 3.89 0:1046 [G] 63.9
W:11 [VAL] 0:1086 [A] 3.01 0:1073 [A] 63.9
W:11 [VAL] 0:1087 [G] 3.67 63.9
W:12 [ASN] 0:1067 [A] 2.59 0:1047 [U] sugar:SC 56.9
W:12 [ASN] 0:1068 [C] 2.93 0:1046 [G] 56.9
W:12 [ASN] 0:1084 [C] 3.64 0:1075 [G] 56.9
W:12 [ASN] 0:1085 [C] 4.8 0:1074 [G] 56.9
W:12 [ASN] 0:1086 [A] 3.47 0:1073 [A] 56.9
W:13 [MET] 0:1067 [A] 4.13 0:1047 [U] 52.2
W:13 [MET] 0:1068 [C] 4.49 0:1046 [G] 52.2
W:14 [HIS] 0:1066 [U] 3.28 0:1048 [G] sugar:SC 50.6
W:14 [HIS] 0:1067 [A] 4.29 0:1047 [U] 50.6
W:15 [THR] 0:943 [A] 4.63 19.7
W:15 [THR] 0:1066 [U] 4.77 0:1048 [G] 19.7
W:15 [THR] 0:1067 [A] 2.64 0:1047 [U] 19.7
W:16 [ASP] 0:943 [A] 4.07 41.9
W:16 [ASP] 0:944 [G] 3.59 0:1023 [C] 41.9
W:19 [ASP] 0:943 [A] 2.49 sugar:SC 41.4
W:19 [ASP] 0:944 [G] 4.68 0:1023 [C] 41.4
W:20 [THR] 0:944 [G] 2.72 0:1023 [C] sugar:SC 93.6
W:22 [GLU] 0:1025 [C] 4.27 0:941 [G] 23.5
W:23 [MET] 0:943 [A] 3.42 61.9
W:23 [MET] 0:944 [G] 3.16 0:1023 [C] 61.9
W:23 [MET] 0:1024 [G] 2.62 0:942 [U] sugar:BB 61.9
W:23 [MET] 0:1025 [C] 3.1 0:941 [G] 61.9
W:24 [LEU] 0:1024 [G] 4.36 0:942 [U] 93.9
W:25 [ASN] 0:1024 [G] 4.44 0:942 [U] 66.9
W:25 [ASN] 0:1025 [C] 3.01 0:941 [G] 66.9
W:25 [ASN] 0:1287 [A] 4.06 66.9
W:27 [HIS] 0:1287 [A] 3.86 45.9
W:27 [HIS] 0:1288 [U] 3.27 45.9
W:28 [HIS] 0:1262 [C] 3.29 0:1094 [G] 69.6
W:28 [HIS] 0:1287 [A] 3.1 69.6
W:28 [HIS] 0:1288 [U] 3.18 69.6
W:29 [VAL] 0:1086 [A] 3.98 0:1073 [A] 37.3
W:29 [VAL] 0:1087 [G] 3.73 37.3
W:29 [VAL] 0:1261 [A] 4.07 0:1095 [U] 37.3
W:29 [VAL] 0:1262 [C] 3.15 0:1094 [G] 37.3
W:30 [ASN] 0:1262 [C] 3.23 0:1094 [G] sugar:SC 84.2
W:31 [HIS] 0:1262 [C] 3.93 0:1094 [G] 76.7
W:31 [HIS] 0:1263 [C] 2.67 0:1093 [G] 76.7
W:31 [HIS] 0:1287 [A] 3.26 sugar:SC 76.7
W:39 [ASP] 0:945 [U] 3.65 0:1022 [A] sugar:BB 35.6
W:39 [ASP] 0:946 [C] 3.48 0:1021 [G] 35.6
W:40 [ALA] 0:945 [U] 2.68 0:1022 [A] sugar:BB 56.1
W:40 [ALA] 0:946 [C] 3.55 0:1021 [G] 56.1
W:40 [ALA] 0:1022 [A] 4.84 0:945 [U] 56.1
W:40 [ALA] 0:1023 [C] 4.18 0:944 [G] 56.1
W:41 [TYR] 0:945 [U] 4.74 0:1022 [A] 0.2
W:41 [TYR] 0:1023 [C] 3.52 0:944 [G] 0.2
W:41 [TYR] 0:1024 [G] 2.96 0:942 [U] 0.2
W:42 [ARG] 0:945 [U] 4.78 0:1022 [A] 33.1
W:43 [GLY] 0:945 [U] 3.19 0:1022 [A] 92.5
W:43 [GLY] 0:946 [C] 4.44 0:1021 [G] 92.5
W:44 [MET] 0:944 [G] 3.38 0:1023 [C] 95.1
W:44 [MET] 0:945 [U] 3.51 0:1022 [A] 95.1
W:44 [MET] 0:1023 [C] 4.5 0:944 [G] 95.1
W:44 [MET] 0:1024 [G] 4.76 0:942 [U] 95.1
W:47 [LYS] 0:944 [G] 3.49 0:1023 [C] 79.7
W:47 [LYS] 0:945 [U] 3.34 0:1022 [A] 79.7
W:69 [ARG] 0:566 [A] 3.39 0:592 [G] 92.3
W:69 [ARG] 0:567 [U] 2.69 0:591 [A] 92.3
W:69 [ARG] 0:1263 [C] 3.2 0:1093 [G] sugar:SC 92.3
W:69 [ARG] 0:1264 [U] 4.5 0:1092 [A] 92.3
W:71 [GLU] 0:1264 [U] 4.63 0:1092 [A] 53.2
W:73 [LEU] 0:1286 [A] 4.15 0:1270 [U] 28.6
W:73 [LEU] 0:1287 [A] 4.37 28.6
W:73 [LEU] 0:1288 [U] 4.59 28.6
W:74 [GLU] 0:1285 [U] 3.31 0:1271 [A] 0.0
W:74 [GLU] 0:1286 [A] 3.54 0:1270 [U] 0.0
W:75 [GLY] 0:1285 [U] 3.65 0:1271 [A] 80.5
W:75 [GLY] 0:1286 [A] 3.2 0:1270 [U] 80.5
W:76 [ASP] 0:1265 [G] 4.37 0:1091 [U] 45.7
W:76 [ASP] 0:1285 [U] 4.86 0:1271 [A] 45.7
W:108 [ARG] 0:1025 [C] 3.04 0:941 [G] 44.9
W:108 [ARG] 0:1026 [U] 3.69 0:940 [G] 44.9
W:108 [ARG] 0:1287 [A] 4.59 44.9
W:113 [SER] 0:1287 [A] 3.54 83.5
W:114 [PRO] 0:1287 [A] 3.85 71.4
W:115 [THR] 0:1287 [A] 3.75 71.3
W:117 [ARG] 0:1263 [C] 2.87 0:1093 [G] 89.8
W:117 [ARG] 0:1264 [U] 3.02 0:1092 [A] 89.8
W:117 [ARG] 0:1287 [A] 3.11 89.8
W:118 [LEU] 0:1262 [C] 2.91 0:1094 [G] sugar:BB 97.9
W:118 [LEU] 0:1263 [C] 3.31 0:1093 [G] 97.9
W:119 [HIS] 0:566 [A] 3.84 0:592 [G] sugar:SC 77.3
W:119 [HIS] 0:567 [U] 3.31 0:591 [A] 77.3
W:119 [HIS] 0:1094 [G] 3.65 0:1262 [C] 77.3
W:119 [HIS] 0:1095 [U] 3.24 0:1261 [A] sugar:SC 77.3
W:119 [HIS] 0:1262 [C] 3.9 0:1094 [G] 77.3
W:119 [HIS] 0:1263 [C] 3.83 0:1093 [G] 77.3
W:120 [PRO] 0:1094 [G] 3.84 0:1262 [C] 95.5
W:120 [PRO] 0:1095 [U] 3.16 0:1261 [A] 95.5
W:120 [PRO] 0:1096 [U] 3.69 0:1259 [A] 95.5
W:120 [PRO] 0:1261 [A] 4.54 0:1095 [U] 95.5
W:120 [PRO] 0:1262 [C] 2.98 0:1094 [G] 95.5
W:120 [PRO] 0:1263 [C] 4.35 0:1093 [G] 95.5
W:121 [PRO] 0:1095 [U] 4.16 0:1261 [A] 95.4
W:121 [PRO] 0:1096 [U] 3.32 0:1259 [A] 95.4
W:122 [ARG] 0:567 [U] 3.3 0:591 [A] 65.8
W:122 [ARG] 0:568 [G] 2.77 0:590 [A] 65.8
W:122 [ARG] 0:1095 [U] 4.3 0:1261 [A] 65.8
W:122 [ARG] 0:1096 [U] 3.69 0:1259 [A] 65.8
W:123 [GLY] 0:1095 [U] 4.6 0:1261 [A] 62.3
W:123 [GLY] 0:1096 [U] 2.74 0:1259 [A] 62.3
W:124 [GLY] 0:1096 [U] 3.14 0:1259 [A] 98.7
W:124 [GLY] 0:1097 [A] 3.38 98.7
W:125 [HIS] 0:1096 [U] 4.11 0:1259 [A] 58.5
W:125 [HIS] 0:1097 [A] 3.08 58.5
W:125 [HIS] 0:1098 [A] 3.93 0:1258 [G] 58.5
W:127 [GLY] 0:1098 [A] 3.22 0:1258 [G] 81.9
W:128 [VAL] 0:1085 [C] 4.72 0:1074 [G] 74.9
W:128 [VAL] 0:1097 [A] 4.12 74.9
W:128 [VAL] 0:1098 [A] 3.07 0:1258 [G] 74.9
W:129 [LYS] 0:1084 [C] 2.97 0:1075 [G] sugar:SC 92.0
W:129 [LYS] 0:1085 [C] 4.16 0:1074 [G] 92.0
W:129 [LYS] 0:1098 [A] 3.07 0:1258 [G] 92.0
W:129 [LYS] 0:1099 [G] 3.25 0:1257 [C] 92.0
W:154 [ARG] 0:567 [U] 3.54 0:591 [A] 67.0
W:154 [ARG] 0:568 [G] 3.97 0:590 [A] 67.0
W:154 [ARG] 0:588 [G] 2.37 base:SC 67.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group124 1YHQ_W_0 W: 50s ribosomal protein l30p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P14121 Ribosomal protein L30p/L7e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 7O7Y_BF_B5 0.64 0.94 1.51 0.22 Ribosomal protein L30p/L7e compare
1YHQ_W_0 6S0Z_X_A 0.68 0.9 1.63 0.27 Ribosomal protein L30p/L7e compare
1YHQ_W_0 6AZ3_c_1 0.55 0.75 1.77 0.17 Ribosomal protein L30p/L7e compare
1YHQ_W_0 7K00_y_a 0.71 0.91 1.82 0.23 Ribosomal protein L30p/L7e compare
1YHQ_W_0 4Y4O_13_1A 0.75 0.9 2.44 0.15 Ribosomal protein L30p/L7e compare
1YHQ_W_0 7RYG_Y_A 0.79 0.92 2.65 0.15 Ribosomal protein L30p/L7e compare