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All interfaces > All interologs > Interface groups > group124 > 1YHQ_W_0 vs 4Y4O_13_1A

Interface analysis


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Common contacts -

1YHQ_W
1YHQ_0
4Y4O_13
4Y4O_1A
Conserved?
W:11 [VAL] 0:1068 [C] 13:13 [ILE] 1A:1015 [C] ✔
W:11 [VAL] 0:1086 [A] 13:13 [ILE] 1A:1034 [A] ✔
W:11 [VAL] 0:1087 [G] 13:13 [ILE] 1A:1035 [G] ✔
W:20 [THR] 0:944 [G] 13:22 [ALA] 1A:897 [C] ✔
W:43 [GLY] 0:945 [U] 13:45 [GLY] 1A:898 [U] ✔
W:43 [GLY] 0:946 [C] 13:45 [GLY] 1A:899 [G] ✔
W:27 [HIS] 0:1287 [A] 13:29 [ARG] 1A:1228 [G] ✔
W:28 [HIS] 0:1262 [C] 13:30 [ARG] 1A:1204 [C] ✔
W:28 [HIS] 0:1287 [A] 13:30 [ARG] 1A:1228 [G] ✔
W:44 [MET] 0:944 [G] 13:46 [ASN] 1A:897 [C] ✔
W:44 [MET] 0:945 [U] 13:46 [ASN] 1A:898 [U] ✔
W:44 [MET] 0:1024 [G] 13:46 [ASN] 1A:973 [G] ✔
W:22 [GLU] 0:1025 [C] 13:24 [LYS] 1A:974 [G] ✔
W:12 [ASN] 0:1067 [A] 13:14 [GLY] 1A:1014 [U] ✔
W:12 [ASN] 0:1068 [C] 13:14 [GLY] 1A:1015 [C] ✔
W:23 [MET] 0:943 [A] 13:25 [ALA] 1A:896 [A] ✔
W:23 [MET] 0:944 [G] 13:25 [ALA] 1A:897 [C] ✔
W:23 [MET] 0:1024 [G] 13:25 [ALA] 1A:973 [G] ✔
W:23 [MET] 0:1025 [C] 13:25 [ALA] 1A:974 [G] ✔
W:9 [GLY] 0:1086 [A] 13:11 [SER] 1A:1034 [A] ✔
W:9 [GLY] 0:1087 [G] 13:11 [SER] 1A:1035 [G] ✔
W:19 [ASP] 0:943 [A] 13:21 [ALA] 1A:896 [A] ✔
W:19 [ASP] 0:944 [G] 13:21 [ALA] 1A:897 [C] ✔
W:8 [ARG] 0:1085 [C] 13:10 [LYS] 1A:1033 [G] ✔
W:8 [ARG] 0:1086 [A] 13:10 [LYS] 1A:1034 [A] ✔
W:47 [LYS] 0:944 [G] 13:49 [LYS] 1A:897 [C] ✔
W:47 [LYS] 0:945 [U] 13:49 [LYS] 1A:898 [U] ✔
W:14 [HIS] 0:1066 [U] 13:16 [PRO] 1A:1013 [G] ✔
W:14 [HIS] 0:1067 [A] 13:16 [PRO] 1A:1014 [U] ✔
W:40 [ALA] 0:945 [U] 13:42 [ALA] 1A:898 [U] ✔
W:40 [ALA] 0:946 [C] 13:42 [ALA] 1A:899 [G] ✔
W:40 [ALA] 0:1022 [A] 13:42 [ALA] 1A:972 [A] ✔
W:39 [ASP] 0:945 [U] 13:41 [PRO] 1A:898 [U] ✔
W:39 [ASP] 0:946 [C] 13:41 [PRO] 1A:899 [G] ✔
W:16 [ASP] 0:944 [G] 13:18 [ASP] 1A:897 [C] ✔
W:7 [LEU] 0:1086 [A] 13:9 [VAL] 1A:1034 [A] ✔
W:30 [ASN] 0:1262 [C] 13:32 [GLN] 1A:1204 [C] ✔
W:13 [MET] 0:1067 [A] 13:15 [TYR] 1A:1014 [U] ✔
W:13 [MET] 0:1068 [C] 13:15 [TYR] 1A:1015 [C] ✔
W:29 [VAL] 0:1086 [A] 13:31 [LEU] 1A:1034 [A] ✔
W:29 [VAL] 0:1087 [G] 13:31 [LEU] 1A:1035 [G] ✔
W:29 [VAL] 0:1261 [A] 13:31 [LEU] 1A:1203 [G] ✔
W:29 [VAL] 0:1262 [C] 13:31 [LEU] 1A:1204 [C] ✔
W:15 [THR] 0:1066 [U] 13:17 [LYS] 1A:1013 [G] ✔
W:15 [THR] 0:1067 [A] 13:17 [LYS] 1A:1014 [U] ✔
W:10 [GLU] 0:1068 [C] 13:12 [PRO] 1A:1015 [C] ✔
W:10 [GLU] 0:1087 [G] 13:12 [PRO] 1A:1035 [G] ✔
W:12 [ASN] 0:1085 [C] 13:14 [GLY] 1A:1033 [G] ❌ 4Y4O_13_1A
W:12 [ASN] 0:1086 [A] 13:14 [GLY] 1A:1034 [A] ❌ 4Y4O_13_1A
W:9 [GLY] 0:1085 [C] 13:11 [SER] 1A:1033 [G] ❌ 4Y4O_13_1A
W:16 [ASP] 0:943 [A] 13:18 [ASP] 1A:896 [A] ❌ 4Y4O_13_1A
W:15 [THR] 0:943 [A] 13:17 [LYS] 1A:896 [A] ❌ 4Y4O_13_1A
W:11 [VAL] 0:1067 [A] 13:13 [ILE] 1A:1014 [U] ❌ 1YHQ_W_0
W:13 [MET] 0:1085 [C] 13:15 [TYR] 1A:1033 [G] ❌ 1YHQ_W_0
W:16 [ASP] 0:945 [U] 13:18 [ASP] 1A:898 [U] ❌ 1YHQ_W_0
W:22 [GLU] 0:943 [A] 13:24 [LYS] 1A:896 [A] ❌ 1YHQ_W_0
W:28 [HIS] 0:1263 [C] 13:30 [ARG] 1A:1205 [U] ❌ 1YHQ_W_0
W:40 [ALA] 0:1024 [G] 13:42 [ALA] 1A:973 [G] ❌ 1YHQ_W_0
W:12 [ASN] 0:1084 [C] 13:14 [GLY] 1A:1032 [C] ❌ 4Y4O_1A:1032 no longer at interface
W:22 [GLU] 0:942 [U] 13:24 [LYS] 1A:895 [G] ❌ 1YHQ_0:942 no longer at interface
W:22 [GLU] 0:1027 [G] 13:24 [LYS] 1A:976 [G] ❌ 1YHQ_0:1027 no longer at interface
W:22 [GLU] 0:1030 [U] 13:24 [LYS] 1A:977 [G] ❌ 1YHQ_0:1030 no longer at interface
W:22 [GLU] 0:1032 [A] 13:24 [LYS] 1A:978 [A] ❌ 1YHQ_0:1032 no longer at interface
W:27 [HIS] 0:1030 [U] 13:29 [ARG] 1A:977 [G] ❌ 1YHQ_0:1030 no longer at interface
W:27 [HIS] 0:1289 [C] 13:29 [ARG] 1A:1229 [G] ❌ 1YHQ_0:1289 no longer at interface
W:27 [HIS] 0:1027 [G] 13:29 [ARG] 1A:976 [G] ❌ 1YHQ_0:1027 no longer at interface
W:28 [HIS] 0:1289 [C] 13:30 [ARG] 1A:1229 [G] ❌ 1YHQ_0:1289 no longer at interface
W:41 [TYR] 0:945 [U] 13:44 [ARG] 1A:898 [U] ❌ 4Y4O_13:44 no longer at interface
W:41 [TYR] 0:1024 [G] 13:44 [ARG] 1A:973 [G] ❌ 4Y4O_13:44 no longer at interface
W:31 [HIS] 0:1262 [C] 13:33 [GLN] 1A:1204 [C] ❌ 4Y4O_13:33 no longer at interface
W:31 [HIS] 0:1263 [C] 13:33 [GLN] 1A:1205 [U] ❌ 4Y4O_13:33 no longer at interface
W:31 [HIS] 0:1287 [A] 13:33 [GLN] 1A:1228 [G] ❌ 4Y4O_13:33 no longer at interface
W:24 [LEU] 0:1024 [G] 13:26 [LEU] 1A:973 [G] ❌ 4Y4O_13:26 no longer at interface
W:25 [ASN] 0:1024 [G] 13:27 [GLY] 1A:973 [G] ❌ 4Y4O_13:27 no longer at interface
W:25 [ASN] 0:1025 [C] 13:27 [GLY] 1A:974 [G] ❌ 4Y4O_13:27 no longer at interface
W:25 [ASN] 0:1287 [A] 13:27 [GLY] 1A:1228 [G] ❌ 4Y4O_13:27 no longer at interface
W:18 [GLN] 0:1067 [A] 13:20 [LYS] 1A:1014 [U] ❌ 1YHQ_W:18 no longer at interface
W:18 [GLN] 0:1068 [C] 13:20 [LYS] 1A:1015 [C] ❌ 1YHQ_W:18 no longer at interface
W:38 [THR] 0:1024 [G] 13:40 [THR] 1A:973 [G] ❌ 1YHQ_W:38 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L30p/L7e 0.9 2.44 0.15 0.87 0.93 0.88 0.77 0.75 0.67 0.21 0.66


Other pairs involving 1YHQ_W_0 or 4Y4O_13_1A

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 6S0Z_X_A 0.68 0.9 1.63 0.27 Ribosomal protein L30p/L7e compare
1YHQ_W_0 7K00_y_a 0.71 0.91 1.82 0.23 Ribosomal protein L30p/L7e compare
1YHQ_W_0 4Y4O_13_1A 0.75 0.9 2.44 0.15 Ribosomal protein L30p/L7e compare
1YHQ_W_0 6AZ3_c_1 0.55 0.75 1.77 0.17 Ribosomal protein L30p/L7e compare
1YHQ_W_0 7O7Y_BF_B5 0.64 0.94 1.51 0.22 Ribosomal protein L30p/L7e compare
1YHQ_W_0 7RYG_Y_A 0.79 0.92 2.65 0.15 Ribosomal protein L30p/L7e compare
1VQ8_W_0 4Y4O_13_1A 0.76 0.9 2.49 0.15 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6S0Z_X_A 0.79 0.97 1.8 0.38 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7OF0_Z_A 0.49 0.93 1.37 0.18 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7O7Y_BF_B5 0.58 0.89 2.87 0.04 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6AZ3_c_1 0.51 0.65 3.35 0.08 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 7RYG_Y_A 0.66 0.96 3.31 0.31 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7K00_y_a 0.76 0.96 1.81 0.29 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare