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All interfaces > All interologs > Interface groups > group124 > 1YHQ_W_0 vs 6S0Z_X_A

Interface analysis


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Common contacts -

1YHQ_W
1YHQ_0
6S0Z_X
6S0Z_A
Conserved?
W:11 [VAL] 0:1068 [C] X:13 [ILE] A:1014 [U] ✔
W:11 [VAL] 0:1086 [A] X:13 [ILE] A:1032 [A] ✔
W:11 [VAL] 0:1087 [G] X:13 [ILE] A:1033 [G] ✔
W:20 [THR] 0:944 [G] X:22 [THR] A:895 [U] ✔
W:43 [GLY] 0:945 [U] X:45 [GLY] A:896 [U] ✔
W:43 [GLY] 0:946 [C] X:45 [GLY] A:897 [A] ✔
W:27 [HIS] 0:1287 [A] X:29 [LYS] A:1222 [A] ✔
W:28 [HIS] 0:1262 [C] X:30 [LYS] A:1202 [C] ✔
W:44 [MET] 0:944 [G] X:46 [GLN] A:895 [U] ✔
W:44 [MET] 0:945 [U] X:46 [GLN] A:896 [U] ✔
W:44 [MET] 0:1024 [G] X:46 [GLN] A:973 [A] ✔
W:12 [ASN] 0:1067 [A] X:14 [GLY] A:1013 [U] ✔
W:12 [ASN] 0:1068 [C] X:14 [GLY] A:1014 [U] ✔
W:23 [MET] 0:943 [A] X:25 [ALA] A:894 [A] ✔
W:23 [MET] 0:944 [G] X:25 [ALA] A:895 [U] ✔
W:23 [MET] 0:1025 [C] X:25 [ALA] A:974 [U] ✔
W:9 [GLY] 0:1085 [C] X:11 [SER] A:1031 [C] ✔
W:9 [GLY] 0:1086 [A] X:11 [SER] A:1032 [A] ✔
W:9 [GLY] 0:1087 [G] X:11 [SER] A:1033 [G] ✔
W:19 [ASP] 0:943 [A] X:21 [LYS] A:894 [A] ✔
W:19 [ASP] 0:944 [G] X:21 [LYS] A:895 [U] ✔
W:8 [ARG] 0:1085 [C] X:10 [ARG] A:1031 [C] ✔
W:8 [ARG] 0:1086 [A] X:10 [ARG] A:1032 [A] ✔
W:47 [LYS] 0:944 [G] X:49 [LYS] A:895 [U] ✔
W:47 [LYS] 0:945 [U] X:49 [LYS] A:896 [U] ✔
W:14 [HIS] 0:1066 [U] X:16 [PRO] A:1012 [G] ✔
W:14 [HIS] 0:1067 [A] X:16 [PRO] A:1013 [U] ✔
W:40 [ALA] 0:945 [U] X:42 [ALA] A:896 [U] ✔
W:40 [ALA] 0:946 [C] X:42 [ALA] A:897 [A] ✔
W:40 [ALA] 0:1023 [C] X:42 [ALA] A:972 [A] ✔
W:41 [TYR] 0:945 [U] X:43 [ILE] A:896 [U] ✔
W:41 [TYR] 0:1024 [G] X:43 [ILE] A:973 [A] ✔
W:16 [ASP] 0:944 [G] X:18 [THR] A:895 [U] ✔
W:7 [LEU] 0:1086 [A] X:9 [THR] A:1032 [A] ✔
W:30 [ASN] 0:1262 [C] X:32 [ASN] A:1202 [C] ✔
W:13 [MET] 0:1067 [A] X:15 [ARG] A:1013 [U] ✔
W:29 [VAL] 0:1086 [A] X:31 [THR] A:1032 [A] ✔
W:29 [VAL] 0:1087 [G] X:31 [THR] A:1033 [G] ✔
W:29 [VAL] 0:1261 [A] X:31 [THR] A:1201 [G] ✔
W:29 [VAL] 0:1262 [C] X:31 [THR] A:1202 [C] ✔
W:15 [THR] 0:1066 [U] X:17 [GLU] A:1012 [G] ✔
W:15 [THR] 0:1067 [A] X:17 [GLU] A:1013 [U] ✔
W:25 [ASN] 0:1025 [C] X:27 [GLY] A:974 [U] ✔
W:10 [GLU] 0:1087 [G] X:12 [VAL] A:1033 [G] ✔
W:28 [HIS] 0:1287 [A] X:30 [LYS] A:1222 [A] ❌ 6S0Z_X_A
W:44 [MET] 0:1023 [C] X:46 [GLN] A:972 [A] ❌ 6S0Z_X_A
W:22 [GLU] 0:1025 [C] X:24 [GLU] A:974 [U] ❌ 6S0Z_X_A
W:12 [ASN] 0:1085 [C] X:14 [GLY] A:1031 [C] ❌ 6S0Z_X_A
W:12 [ASN] 0:1086 [A] X:14 [GLY] A:1032 [A] ❌ 6S0Z_X_A
W:23 [MET] 0:1024 [G] X:25 [ALA] A:973 [A] ❌ 6S0Z_X_A
W:41 [TYR] 0:1023 [C] X:43 [ILE] A:972 [A] ❌ 6S0Z_X_A
W:16 [ASP] 0:943 [A] X:18 [THR] A:894 [A] ❌ 6S0Z_X_A
W:24 [LEU] 0:1024 [G] X:26 [LEU] A:973 [A] ❌ 6S0Z_X_A
W:13 [MET] 0:1068 [C] X:15 [ARG] A:1014 [U] ❌ 6S0Z_X_A
W:15 [THR] 0:943 [A] X:17 [GLU] A:894 [A] ❌ 6S0Z_X_A
W:25 [ASN] 0:1024 [G] X:27 [GLY] A:973 [A] ❌ 6S0Z_X_A
W:25 [ASN] 0:1287 [A] X:27 [GLY] A:1222 [A] ❌ 6S0Z_X_A
W:10 [GLU] 0:1068 [C] X:12 [VAL] A:1014 [U] ❌ 6S0Z_X_A
W:8 [ARG] 0:1097 [A] X:10 [ARG] A:1044 [A] ❌ 1YHQ_W_0
W:11 [VAL] 0:1067 [A] X:13 [ILE] A:1013 [U] ❌ 1YHQ_W_0
W:13 [MET] 0:1085 [C] X:15 [ARG] A:1031 [C] ❌ 1YHQ_W_0
W:13 [MET] 0:1066 [U] X:15 [ARG] A:1012 [G] ❌ 1YHQ_W_0
W:20 [THR] 0:945 [U] X:22 [THR] A:896 [U] ❌ 1YHQ_W_0
W:22 [GLU] 0:1026 [U] X:24 [GLU] A:975 [U] ❌ 1YHQ_W_0
W:23 [MET] 0:1026 [U] X:25 [ALA] A:975 [U] ❌ 1YHQ_W_0
W:24 [LEU] 0:1025 [C] X:26 [LEU] A:974 [U] ❌ 1YHQ_W_0
W:24 [LEU] 0:1026 [U] X:26 [LEU] A:975 [U] ❌ 1YHQ_W_0
W:25 [ASN] 0:1026 [U] X:27 [GLY] A:975 [U] ❌ 1YHQ_W_0
W:30 [ASN] 0:1261 [A] X:32 [ASN] A:1201 [G] ❌ 1YHQ_W_0
W:40 [ALA] 0:1024 [G] X:42 [ALA] A:973 [A] ❌ 1YHQ_W_0
W:41 [TYR] 0:1025 [C] X:43 [ILE] A:974 [U] ❌ 1YHQ_W_0
W:44 [MET] 0:1025 [C] X:46 [GLN] A:974 [U] ❌ 1YHQ_W_0
W:12 [ASN] 0:1084 [C] X:14 [GLY] A:1030 [C] ❌ 6S0Z_A:1030 no longer at interface
W:40 [ALA] 0:1022 [A] X:42 [ALA] A:971 [U] ❌ 6S0Z_A:971 no longer at interface
W:31 [HIS] 0:1263 [C] X:33 [SER] A:1203 [U] ❌ 6S0Z_X:33, 6S0Z_A:1203 no longer at interface
W:22 [GLU] 0:1032 [A] X:24 [GLU] A:977 [A] ❌ 1YHQ_0:1032 no longer at interface
W:22 [GLU] 0:1027 [G] X:24 [GLU] A:976 [U] ❌ 1YHQ_0:1027 no longer at interface
W:27 [HIS] 0:1289 [C] X:29 [LYS] A:1223 [A] ❌ 1YHQ_0:1289 no longer at interface
W:28 [HIS] 0:1290 [G] X:30 [LYS] A:1224 [U] ❌ 1YHQ_0:1290 no longer at interface
W:28 [HIS] 0:1289 [C] X:30 [LYS] A:1223 [A] ❌ 1YHQ_0:1289 no longer at interface
W:31 [HIS] 0:1262 [C] X:33 [SER] A:1202 [C] ❌ 6S0Z_X:33 no longer at interface
W:31 [HIS] 0:1287 [A] X:33 [SER] A:1222 [A] ❌ 6S0Z_X:33 no longer at interface
W:42 [ARG] 0:945 [U] X:44 [ARG] A:896 [U] ❌ 6S0Z_X:44 no longer at interface
W:18 [GLN] 0:1068 [C] X:20 [ARG] A:1014 [U] ❌ 1YHQ_W:18 no longer at interface
W:18 [GLN] 0:1067 [A] X:20 [ARG] A:1013 [U] ❌ 1YHQ_W:18 no longer at interface
W:35 [VAL] 0:1025 [C] X:37 [VAL] A:974 [U] ❌ 1YHQ_W:35 no longer at interface
W:37 [GLU] 0:1024 [G] X:40 [ASN] A:973 [A] ❌ 1YHQ_W:37 no longer at interface
W:38 [THR] 0:946 [C] X:41 [PRO] A:897 [A] ❌ 1YHQ_W:38 no longer at interface
W:38 [THR] 0:945 [U] X:41 [PRO] A:896 [U] ❌ 1YHQ_W:38 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L30p/L7e 0.9 1.63 0.27 0.88 0.93 0.83 0.82 0.68 0.56 0.25 0.38


Other pairs involving 1YHQ_W_0 or 6S0Z_X_A

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 6S0Z_X_A 0.68 0.9 1.63 0.27 Ribosomal protein L30p/L7e compare
1YHQ_W_0 7K00_y_a 0.71 0.91 1.82 0.23 Ribosomal protein L30p/L7e compare
1YHQ_W_0 4Y4O_13_1A 0.75 0.9 2.44 0.15 Ribosomal protein L30p/L7e compare
1YHQ_W_0 6AZ3_c_1 0.55 0.75 1.77 0.17 Ribosomal protein L30p/L7e compare
1YHQ_W_0 7O7Y_BF_B5 0.64 0.94 1.51 0.22 Ribosomal protein L30p/L7e compare
1YHQ_W_0 7RYG_Y_A 0.79 0.92 2.65 0.15 Ribosomal protein L30p/L7e compare
1VQ8_W_0 6S0Z_X_A 0.69 0.9 1.68 0.27 Ribosomal protein L30p/L7e compare
6AZ3_c_1 6S0Z_X_A 0.58 0.65 2.43 0.13 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6S0Z_X_A 0.79 0.97 1.8 0.38 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7O7Y_BF_B5 0.72 0.89 2.16 0.17 Ribosomal protein L30p/L7e compare
6S0Z_X_A 7OF0_Z_A 0.62 0.93 2.4 0.18 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7K00_y_a 0.76 0.97 0.92 0.43 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7RYG_Y_A 0.68 0.98 2.14 0.27 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare