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All interfaces > All interologs > Interface groups > group124 > 4Y4O_13_1A

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_13
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
13:9 [VAL] 1A:1034 [A] 4.5 44.02
13:10 [LYS] 1A:1033 [G] 2.79 1A:1022 [C] 71.61
13:10 [LYS] 1A:1034 [A] 3.59 71.61
13:11 [SER] 1A:1034 [A] 2.87 98.89
13:11 [SER] 1A:1035 [G] 2.79 1A:1021 [G] 98.89
13:12 [PRO] 1A:1015 [C] 4.84 1A:992 [G] 15.09
13:12 [PRO] 1A:1035 [G] 4.71 1A:1021 [G] 15.09
13:13 [ILE] 1A:1014 [U] 4.92 1A:993 [G] 74.0
13:13 [ILE] 1A:1015 [C] 3.97 1A:992 [G] 74.0
13:13 [ILE] 1A:1034 [A] 3.39 74.0
13:13 [ILE] 1A:1035 [G] 3.43 1A:1021 [G] 74.0
13:14 [GLY] 1A:1014 [U] 3.28 1A:993 [G] 69.57
13:14 [GLY] 1A:1015 [C] 3.05 1A:992 [G] 69.57
13:15 [TYR] 1A:1014 [U] 3.51 1A:993 [G] 36.28
13:15 [TYR] 1A:1015 [C] 4.67 1A:992 [G] 36.28
13:15 [TYR] 1A:1033 [G] 4.98 1A:1022 [C] 36.28
13:16 [PRO] 1A:1013 [G] 3.67 1A:994 [C] 23.64
13:16 [PRO] 1A:1014 [U] 3.71 1A:993 [G] 23.64
13:17 [LYS] 1A:1013 [G] 3.57 1A:994 [C] 2.75
13:17 [LYS] 1A:1014 [U] 2.85 1A:993 [G] 2.75
13:18 [ASP] 1A:897 [C] 3.64 1A:973 [G] sugar:BB 26.06
13:18 [ASP] 1A:898 [U] 4.83 1A:972 [A] 26.06
13:20 [LYS] 1A:1014 [U] 4.2 1A:993 [G] 54.94
13:20 [LYS] 1A:1015 [C] 2.92 1A:992 [G] 54.94
13:21 [ALA] 1A:896 [A] 3.35 1A:974 [G] 27.43
13:21 [ALA] 1A:897 [C] 3.49 1A:973 [G] 27.43
13:22 [ALA] 1A:897 [C] 3.36 1A:973 [G] 74.73
13:24 [LYS] 1A:895 [G] 3.73 2.83
13:24 [LYS] 1A:896 [A] 3.67 1A:974 [G] 2.83
13:24 [LYS] 1A:974 [G] 4.96 1A:896 [A] 2.83
13:24 [LYS] 1A:976 [G] 3.15 1A:893 [C] sugar:SC 2.83
13:24 [LYS] 1A:977 [G] 4.08 2.83
13:24 [LYS] 1A:978 [A] 3.2 1A:894 [U] 2.83
13:25 [ALA] 1A:896 [A] 3.41 1A:974 [G] 69.87
13:25 [ALA] 1A:897 [C] 3.82 1A:973 [G] 69.87
13:25 [ALA] 1A:973 [G] 4.26 1A:897 [C] 69.87
13:25 [ALA] 1A:974 [G] 3.86 1A:896 [A] sugar:BB 69.87
13:29 [ARG] 1A:976 [G] 3.98 1A:893 [C] 51.68
13:29 [ARG] 1A:977 [G] 3.32 51.68
13:29 [ARG] 1A:1228 [G] 3.53 1A:1212 [C] 51.68
13:29 [ARG] 1A:1229 [G] 3.21 1A:1211 [U] 51.68
13:30 [ARG] 1A:1204 [C] 4.44 1A:1043 [G] 76.78
13:30 [ARG] 1A:1205 [U] 4.82 1A:1042 [A] 76.78
13:30 [ARG] 1A:1228 [G] 3.87 1A:1212 [C] 76.78
13:30 [ARG] 1A:1229 [G] 3.3 1A:1211 [U] 76.78
13:31 [LEU] 1A:1034 [A] 4.08 62.67
13:31 [LEU] 1A:1035 [G] 3.19 1A:1021 [G] 62.67
13:31 [LEU] 1A:1203 [G] 3.21 1A:1044 [C] 62.67
13:31 [LEU] 1A:1204 [C] 3.3 1A:1043 [G] 62.67
13:32 [GLN] 1A:1204 [C] 3.55 1A:1043 [G] 0.0
13:40 [THR] 1A:973 [G] 4.67 1A:897 [C] 75.8
13:41 [PRO] 1A:898 [U] 4.02 1A:972 [A] 64.53
13:41 [PRO] 1A:899 [G] 3.25 1A:971 [C] 64.53
13:42 [ALA] 1A:898 [U] 2.6 1A:972 [A] sugar:BB 41.55
13:42 [ALA] 1A:899 [G] 3.43 1A:971 [C] 41.55
13:42 [ALA] 1A:972 [A] 4.51 1A:898 [U] 41.55
13:42 [ALA] 1A:973 [G] 3.96 1A:897 [C] 41.55
13:43 [ILE] 1A:898 [U] 4.64 1A:972 [A] 64.42
13:43 [ILE] 1A:973 [G] 4.03 1A:897 [C] 64.42
13:45 [GLY] 1A:898 [U] 3.21 1A:972 [A] 98.1
13:45 [GLY] 1A:899 [G] 3.85 1A:971 [C] 98.1
13:46 [ASN] 1A:897 [C] 2.61 1A:973 [G] base:SC, sugar:SC 83.61
13:46 [ASN] 1A:898 [U] 2.94 1A:972 [A] 83.61
13:46 [ASN] 1A:973 [G] 3.42 1A:897 [C] 83.61
13:49 [LYS] 1A:897 [C] 3.42 1A:973 [G] 77.45
13:49 [LYS] 1A:898 [U] 2.87 1A:972 [A] 77.45

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group124 4Y4O_13_1A 13: 50s ribosomal protein l30, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHQ6 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 4Y4O_13_1A 0.75 0.9 2.44 0.15 Ribosomal protein L30p/L7e compare
1VQ8_W_0 4Y4O_13_1A 0.76 0.9 2.49 0.15 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6S0Z_X_A 0.79 0.97 1.8 0.38 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7OF0_Z_A 0.49 0.93 1.37 0.18 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7O7Y_BF_B5 0.58 0.89 2.87 0.04 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6AZ3_c_1 0.51 0.65 3.35 0.08 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 7RYG_Y_A 0.66 0.96 3.31 0.31 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7K00_y_a 0.76 0.96 1.81 0.29 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare