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All interfaces > All interologs > Interface groups > group124 > 4Y4O_13_1A vs 7K00_y_a

Interface analysis


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Common contacts -

4Y4O_13
4Y4O_1A
7K00_y
7K00_a
Conserved?
13:13 [ILE] 1A:1015 [C] y:14 [ILE] a:970 [U] ✔
13:13 [ILE] 1A:1034 [A] y:14 [ILE] a:988 [A] ✔
13:13 [ILE] 1A:1035 [G] y:14 [ILE] a:989 [G] ✔
13:10 [LYS] 1A:1034 [A] y:11 [ARG] a:988 [A] ✔
13:11 [SER] 1A:1034 [A] y:12 [SER] a:988 [A] ✔
13:11 [SER] 1A:1035 [G] y:12 [SER] a:989 [G] ✔
13:31 [LEU] 1A:1034 [A] y:32 [ILE] a:988 [A] ✔
13:31 [LEU] 1A:1035 [G] y:32 [ILE] a:989 [G] ✔
13:31 [LEU] 1A:1203 [G] y:32 [ILE] a:1157 [G] ✔
13:31 [LEU] 1A:1204 [C] y:32 [ILE] a:1158 [C] ✔
13:24 [LYS] 1A:896 [A] y:25 [LEU] a:849 [A] ✔
13:24 [LYS] 1A:974 [G] y:25 [LEU] a:929 [U] ✔
13:18 [ASP] 1A:897 [C] y:19 [LYS] a:850 [U] ✔
13:18 [ASP] 1A:898 [U] y:19 [LYS] a:851 [C] ✔
13:45 [GLY] 1A:898 [U] y:46 [GLY] a:851 [C] ✔
13:45 [GLY] 1A:899 [G] y:46 [GLY] a:852 [U] ✔
13:25 [ALA] 1A:897 [C] y:26 [GLY] a:850 [U] ✔
13:25 [ALA] 1A:974 [G] y:26 [GLY] a:929 [U] ✔
13:43 [ILE] 1A:898 [U] y:44 [ILE] a:851 [C] ✔
13:43 [ILE] 1A:973 [G] y:44 [ILE] a:927 [A] ✔
13:21 [ALA] 1A:896 [A] y:22 [ALA] a:849 [A] ✔
13:21 [ALA] 1A:897 [C] y:22 [ALA] a:850 [U] ✔
13:16 [PRO] 1A:1013 [G] y:17 [LEU] a:968 [C] ✔
13:17 [LYS] 1A:1013 [G] y:18 [PRO] a:968 [C] ✔
13:17 [LYS] 1A:1014 [U] y:18 [PRO] a:969 [G] ✔
13:40 [THR] 1A:973 [G] y:41 [THR] a:927 [A] ✔
13:15 [TYR] 1A:1014 [U] y:16 [ARG] a:969 [G] ✔
13:29 [ARG] 1A:976 [G] y:30 [ARG] a:931 [U] ✔
13:29 [ARG] 1A:1228 [G] y:30 [ARG] a:1183 [U] ✔
13:29 [ARG] 1A:1229 [G] y:30 [ARG] a:1184 [U] ✔
13:46 [ASN] 1A:897 [C] y:47 [MET] a:850 [U] ✔
13:46 [ASN] 1A:898 [U] y:47 [MET] a:851 [C] ✔
13:46 [ASN] 1A:973 [G] y:47 [MET] a:927 [A] ✔
13:42 [ALA] 1A:898 [U] y:43 [ALA] a:851 [C] ✔
13:42 [ALA] 1A:899 [G] y:43 [ALA] a:852 [U] ✔
13:42 [ALA] 1A:972 [A] y:43 [ALA] a:926 [G] ✔
13:42 [ALA] 1A:973 [G] y:43 [ALA] a:927 [A] ✔
13:32 [GLN] 1A:1204 [C] y:33 [GLY] a:1158 [C] ✔
13:20 [LYS] 1A:1014 [U] y:21 [LYS] a:969 [G] ✔
13:20 [LYS] 1A:1015 [C] y:21 [LYS] a:970 [U] ✔
13:41 [PRO] 1A:898 [U] y:42 [PRO] a:851 [C] ✔
13:41 [PRO] 1A:899 [G] y:42 [PRO] a:852 [U] ✔
13:30 [ARG] 1A:1204 [C] y:31 [ARG] a:1158 [C] ✔
13:30 [ARG] 1A:1205 [U] y:31 [ARG] a:1159 [U] ✔
13:30 [ARG] 1A:1228 [G] y:31 [ARG] a:1183 [U] ✔
13:30 [ARG] 1A:1229 [G] y:31 [ARG] a:1184 [U] ✔
13:12 [PRO] 1A:1035 [G] y:13 [ALA] a:989 [G] ✔
13:22 [ALA] 1A:897 [C] y:23 [THR] a:850 [U] ✔
13:49 [LYS] 1A:898 [U] y:50 [ALA] a:851 [C] ✔
13:14 [GLY] 1A:1014 [U] y:15 [GLY] a:969 [G] ✔
13:14 [GLY] 1A:1015 [C] y:15 [GLY] a:970 [U] ✔
13:13 [ILE] 1A:1014 [U] y:14 [ILE] a:969 [G] ❌ 7K00_y_a
13:24 [LYS] 1A:976 [G] y:25 [LEU] a:931 [U] ❌ 7K00_y_a
13:25 [ALA] 1A:896 [A] y:26 [GLY] a:849 [A] ❌ 7K00_y_a
13:25 [ALA] 1A:973 [G] y:26 [GLY] a:927 [A] ❌ 7K00_y_a
13:16 [PRO] 1A:1014 [U] y:17 [LEU] a:969 [G] ❌ 7K00_y_a
13:15 [TYR] 1A:1015 [C] y:16 [ARG] a:970 [U] ❌ 7K00_y_a
13:12 [PRO] 1A:1015 [C] y:13 [ALA] a:970 [U] ❌ 7K00_y_a
13:49 [LYS] 1A:897 [C] y:50 [ALA] a:850 [U] ❌ 7K00_y_a
13:15 [TYR] 1A:1034 [A] y:16 [ARG] a:988 [A] ❌ 4Y4O_13_1A
13:15 [TYR] 1A:1013 [G] y:16 [ARG] a:968 [C] ❌ 4Y4O_13_1A
13:22 [ALA] 1A:898 [U] y:23 [THR] a:851 [C] ❌ 4Y4O_13_1A
13:10 [LYS] 1A:1033 [G] y:11 [ARG] a:987 [C] ❌ 7K00_a:987 no longer at interface
13:24 [LYS] 1A:895 [G] y:25 [LEU] a:848 [C] ❌ 7K00_a:848 no longer at interface
13:24 [LYS] 1A:977 [G] y:25 [LEU] a:932 [U] ❌ 7K00_a:932 no longer at interface
13:24 [LYS] 1A:978 [A] y:25 [LEU] a:933 [A] ❌ 7K00_a:933 no longer at interface
13:15 [TYR] 1A:1033 [G] y:16 [ARG] a:987 [C] ❌ 7K00_a:987 no longer at interface
13:29 [ARG] 1A:977 [G] y:30 [ARG] a:932 [U] ❌ 7K00_a:932 no longer at interface
13:18 [ASP] 1A:966 [G] y:19 [LYS] a:920 [A] ❌ 4Y4O_1A:966 no longer at interface
13:24 [LYS] 1A:975 [U] y:25 [LEU] a:930 [G] ❌ 4Y4O_1A:975 no longer at interface
13:27 [GLY] 1A:975 [U] y:28 [GLY] a:930 [G] ❌ 4Y4O_13:27, 4Y4O_1A:975 no longer at interface
13:29 [ARG] 1A:975 [U] y:30 [ARG] a:930 [G] ❌ 4Y4O_1A:975 no longer at interface
13:37 [LEU] 1A:975 [U] y:38 [ARG] a:930 [G] ❌ 4Y4O_13:37, 4Y4O_1A:975 no longer at interface
13:9 [VAL] 1A:1034 [A] y:10 [THR] a:988 [A] ❌ 7K00_y:10 no longer at interface
13:26 [LEU] 1A:974 [G] y:27 [LEU] a:929 [U] ❌ 4Y4O_13:26 no longer at interface
13:27 [GLY] 1A:974 [G] y:28 [GLY] a:929 [U] ❌ 4Y4O_13:27 no longer at interface
13:37 [LEU] 1A:974 [G] y:38 [ARG] a:929 [U] ❌ 4Y4O_13:37 no longer at interface
13:44 [ARG] 1A:898 [U] y:45 [ARG] a:851 [C] ❌ 4Y4O_13:44 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA 0.96 1.81 0.29 0.92 0.96 0.96 0.86 0.76 0.66 0.23 0.59


Other pairs involving 4Y4O_13_1A or 7K00_y_a

Total number of entries: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 4Y4O_13_1A 0.75 0.9 2.44 0.15 Ribosomal protein L30p/L7e compare
1VQ8_W_0 4Y4O_13_1A 0.76 0.9 2.49 0.15 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6AZ3_c_1 0.51 0.65 3.35 0.08 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6S0Z_X_A 0.79 0.97 1.8 0.38 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
1YHQ_W_0 7K00_y_a 0.71 0.91 1.82 0.23 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7K00_y_a 0.71 0.91 1.84 0.23 Ribosomal protein L30p/L7e compare
6AZ3_c_1 7K00_y_a 0.70 0.64 2.52 0.23 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 7K00_y_a 0.76 0.96 1.81 0.29 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7K00_y_a 0.76 0.97 0.92 0.43 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7O7Y_BF_B5 0.58 0.89 2.87 0.04 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 7OF0_Z_A 0.49 0.93 1.37 0.18 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7RYG_Y_A 0.66 0.96 3.31 0.31 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare