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All interfaces > All interologs > Interface groups > group124 > 4Y4O_13_1A vs 7RYG_Y_A

Interface analysis


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Common contacts -

4Y4O_13
4Y4O_1A
7RYG_Y
7RYG_A
Conserved?
13:13 [ILE] 1A:1015 [C] Y:13 [SER] A:967 [U] ✔
13:13 [ILE] 1A:1034 [A] Y:13 [SER] A:985 [A] ✔
13:13 [ILE] 1A:1035 [G] Y:13 [SER] A:986 [G] ✔
13:10 [LYS] 1A:1034 [A] Y:10 [LYS] A:985 [A] ✔
13:11 [SER] 1A:1034 [A] Y:11 [SER] A:985 [A] ✔
13:11 [SER] 1A:1035 [G] Y:11 [SER] A:986 [G] ✔
13:24 [LYS] 1A:976 [G] Y:24 [GLN] A:928 [A] ✔
13:45 [GLY] 1A:898 [U] Y:45 [GLY] A:849 [C] ✔
13:45 [GLY] 1A:899 [G] Y:45 [GLY] A:850 [A] ✔
13:25 [ALA] 1A:897 [C] Y:25 [GLY] A:848 [C] ✔
13:25 [ALA] 1A:974 [G] Y:25 [GLY] A:926 [G] ✔
13:43 [ILE] 1A:898 [U] Y:43 [ASN] A:849 [C] ✔
13:43 [ILE] 1A:973 [G] Y:43 [ASN] A:925 [A] ✔
13:21 [ALA] 1A:896 [A] Y:21 [LEU] A:847 [A] ✔
13:21 [ALA] 1A:897 [C] Y:21 [LEU] A:848 [C] ✔
13:16 [PRO] 1A:1013 [G] Y:16 [LEU] A:965 [A] ✔
13:40 [THR] 1A:973 [G] Y:40 [THR] A:925 [A] ✔
13:15 [TYR] 1A:1014 [U] Y:15 [ARG] A:966 [G] ✔
13:15 [TYR] 1A:1033 [G] Y:15 [ARG] A:984 [C] ✔
13:29 [ARG] 1A:1228 [G] Y:29 [ARG] A:1178 [C] ✔
13:29 [ARG] 1A:1229 [G] Y:29 [ARG] A:1179 [G] ✔
13:46 [ASN] 1A:897 [C] Y:46 [MET] A:848 [C] ✔
13:46 [ASN] 1A:898 [U] Y:46 [MET] A:849 [C] ✔
13:46 [ASN] 1A:973 [G] Y:46 [MET] A:925 [A] ✔
13:42 [ALA] 1A:898 [U] Y:42 [SER] A:849 [C] ✔
13:42 [ALA] 1A:899 [G] Y:42 [SER] A:850 [A] ✔
13:42 [ALA] 1A:972 [A] Y:42 [SER] A:924 [G] ✔
13:42 [ALA] 1A:973 [G] Y:42 [SER] A:925 [A] ✔
13:32 [GLN] 1A:1204 [C] Y:31 [ILE] A:1156 [C] ✔
13:41 [PRO] 1A:898 [U] Y:41 [PRO] A:849 [C] ✔
13:41 [PRO] 1A:899 [G] Y:41 [PRO] A:850 [A] ✔
13:30 [ARG] 1A:1204 [C] Y:30 [ARG] A:1156 [C] ✔
13:30 [ARG] 1A:1205 [U] Y:30 [ARG] A:1157 [U] ✔
13:30 [ARG] 1A:1228 [G] Y:30 [ARG] A:1178 [C] ✔
13:30 [ARG] 1A:1229 [G] Y:30 [ARG] A:1179 [G] ✔
13:12 [PRO] 1A:1035 [G] Y:12 [SER] A:986 [G] ✔
13:22 [ALA] 1A:897 [C] Y:22 [CYS] A:848 [C] ✔
13:49 [LYS] 1A:898 [U] Y:49 [LYS] A:849 [C] ✔
13:14 [GLY] 1A:1014 [U] Y:14 [HIS] A:966 [G] ✔
13:14 [GLY] 1A:1015 [C] Y:14 [HIS] A:967 [U] ✔
13:13 [ILE] 1A:1014 [U] Y:13 [SER] A:966 [G] ❌ 7RYG_Y_A
13:10 [LYS] 1A:1033 [G] Y:10 [LYS] A:984 [C] ❌ 7RYG_Y_A
13:24 [LYS] 1A:896 [A] Y:24 [GLN] A:847 [A] ❌ 7RYG_Y_A
13:24 [LYS] 1A:974 [G] Y:24 [GLN] A:926 [G] ❌ 7RYG_Y_A
13:18 [ASP] 1A:897 [C] Y:17 [LYS] A:848 [C] ❌ 7RYG_Y_A
13:18 [ASP] 1A:898 [U] Y:17 [LYS] A:849 [C] ❌ 7RYG_Y_A
13:25 [ALA] 1A:896 [A] Y:25 [GLY] A:847 [A] ❌ 7RYG_Y_A
13:25 [ALA] 1A:973 [G] Y:25 [GLY] A:925 [A] ❌ 7RYG_Y_A
13:16 [PRO] 1A:1014 [U] Y:16 [LEU] A:966 [G] ❌ 7RYG_Y_A
13:15 [TYR] 1A:1015 [C] Y:15 [ARG] A:967 [U] ❌ 7RYG_Y_A
13:29 [ARG] 1A:976 [G] Y:29 [ARG] A:928 [A] ❌ 7RYG_Y_A
13:12 [PRO] 1A:1015 [C] Y:12 [SER] A:967 [U] ❌ 7RYG_Y_A
13:49 [LYS] 1A:897 [C] Y:49 [LYS] A:848 [C] ❌ 7RYG_Y_A
13:14 [GLY] 1A:1034 [A] Y:14 [HIS] A:985 [A] ❌ 4Y4O_13_1A
13:14 [GLY] 1A:1033 [G] Y:14 [HIS] A:984 [C] ❌ 4Y4O_13_1A
13:15 [TYR] 1A:1034 [A] Y:15 [ARG] A:985 [A] ❌ 4Y4O_13_1A
13:18 [ASP] 1A:896 [A] Y:17 [LYS] A:847 [A] ❌ 4Y4O_13_1A
13:18 [ASP] 1A:1014 [U] Y:17 [LYS] A:966 [G] ❌ 4Y4O_13_1A
13:22 [ALA] 1A:898 [U] Y:22 [CYS] A:849 [C] ❌ 4Y4O_13_1A
13:32 [GLN] 1A:1203 [G] Y:31 [ILE] A:1155 [G] ❌ 4Y4O_13_1A
13:32 [GLN] 1A:1034 [A] Y:31 [ILE] A:985 [A] ❌ 4Y4O_13_1A
13:32 [GLN] 1A:1035 [G] Y:31 [ILE] A:986 [G] ❌ 4Y4O_13_1A
13:43 [ILE] 1A:974 [G] Y:43 [ASN] A:926 [G] ❌ 4Y4O_13_1A
13:46 [ASN] 1A:974 [G] Y:46 [MET] A:926 [G] ❌ 4Y4O_13_1A
13:24 [LYS] 1A:895 [G] Y:24 [GLN] A:846 [U] ❌ 7RYG_A:846 no longer at interface
13:24 [LYS] 1A:977 [G] Y:24 [GLN] A:929 [C] ❌ 7RYG_A:929 no longer at interface
13:24 [LYS] 1A:978 [A] Y:24 [GLN] A:930 [U] ❌ 7RYG_A:930 no longer at interface
13:29 [ARG] 1A:977 [G] Y:29 [ARG] A:929 [C] ❌ 7RYG_A:929 no longer at interface
13:24 [LYS] 1A:975 [U] Y:24 [GLN] A:927 [U] ❌ 4Y4O_1A:975 no longer at interface
13:25 [ALA] 1A:975 [U] Y:25 [GLY] A:927 [U] ❌ 4Y4O_1A:975 no longer at interface
13:26 [LEU] 1A:975 [U] Y:26 [LEU] A:927 [U] ❌ 4Y4O_13:26, 4Y4O_1A:975 no longer at interface
13:27 [GLY] 1A:975 [U] Y:27 [GLY] A:927 [U] ❌ 4Y4O_13:27, 4Y4O_1A:975 no longer at interface
13:9 [VAL] 1A:1034 [A] Y:9 [THR] A:985 [A] ❌ 7RYG_Y:9 no longer at interface
13:20 [LYS] 1A:1014 [U] Y:20 [LYS] A:966 [G] ❌ 7RYG_Y:20 no longer at interface
13:20 [LYS] 1A:1015 [C] Y:20 [LYS] A:967 [U] ❌ 7RYG_Y:20 no longer at interface
13:26 [LEU] 1A:974 [G] Y:26 [LEU] A:926 [G] ❌ 4Y4O_13:26 no longer at interface
13:38 [GLU] 1A:974 [G] Y:38 [GLN] A:926 [G] ❌ 4Y4O_13:38 no longer at interface
13:38 [GLU] 1A:973 [G] Y:38 [GLN] A:925 [A] ❌ 4Y4O_13:38 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA 0.96 3.31 0.31 0.92 0.96 0.85 0.95 0.66 0.53 0.23 0.37


Other pairs involving 4Y4O_13_1A or 7RYG_Y_A

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 4Y4O_13_1A 0.75 0.9 2.44 0.15 Ribosomal protein L30p/L7e compare
1YHQ_W_0 7RYG_Y_A 0.79 0.92 2.65 0.15 Ribosomal protein L30p/L7e compare
1VQ8_W_0 4Y4O_13_1A 0.76 0.9 2.49 0.15 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7RYG_Y_A 0.78 0.92 2.64 0.15 Ribosomal protein L30p/L7e compare
7OF0_Z_A 7RYG_Y_A 0.37 0.89 3.29 0.15 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6AZ3_c_1 7RYG_Y_A 0.57 0.63 2.5 0.19 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6S0Z_X_A 0.79 0.97 1.8 0.38 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7OF0_Z_A 0.49 0.93 1.37 0.18 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7O7Y_BF_B5 0.58 0.89 2.87 0.04 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6AZ3_c_1 0.51 0.65 3.35 0.08 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 7RYG_Y_A 0.66 0.96 3.31 0.31 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7K00_y_a 0.76 0.96 1.81 0.29 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7RYG_Y_A 0.68 0.98 2.14 0.27 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare