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All interfaces > All interologs > Interface groups > group124 > 6AZ3_c_1

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6AZ3_c
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
c:28 [PHE] 1:1420 [G] 3.58 44.07
c:33 [THR] 1:633 [U] 4.44 7.49
c:36 [PHE] 1:633 [U] 4.85 42.89
c:40 [VAL] 1:631 [G] 3.58 1.92
c:43 [ARG] 1:631 [G] 2.48 base:SC, base:SC, base:SC 28.24
c:44 [LYS] 1:630 [U] 3.24 1:574 [G] 45.84
c:44 [LYS] 1:631 [G] 2.36 45.84
c:47 [LYS] 1:574 [G] 4.81 1:630 [U] 2.11
c:55 [TYR] 1:585 [U] 4.28 1:624 [U] 30.17
c:55 [TYR] 1:586 [U] 2.48 1:623 [U] 30.17
c:59 [ARG] 1:585 [U] 4.61 1:624 [U] 50.0
c:59 [ARG] 1:586 [U] 2.15 1:623 [U] 50.0
c:63 [ARG] 1:586 [U] 3.76 1:623 [U] 42.22
c:63 [ARG] 1:587 [G] 2.19 1:622 [C] 42.22
c:63 [ARG] 1:613 [C] 3.79 1:594 [G] 42.22
c:66 [ARG] 1:507 [C] 4.52 1:548 [G] 28.45
c:66 [ARG] 1:551 [A] 4.04 28.45
c:67 [GLY] 1:612 [G] 3.48 1:595 [C] 6.01
c:67 [GLY] 1:613 [C] 3.37 1:594 [G] 6.01
c:68 [ALA] 1:612 [G] 4.5 1:595 [C] 0.87
c:68 [ALA] 1:613 [C] 4.23 1:594 [G] 0.87
c:70 [LYS] 1:588 [A] 3.27 1:621 [U] 38.39
c:70 [LYS] 1:611 [C] 4.47 38.39
c:70 [LYS] 1:612 [G] 3.66 1:595 [C] 38.39
c:71 [LYS] 1:612 [G] 3.4 1:595 [C] 6.14
c:73 [VAL] 1:508 [A] 3.42 1:547 [U] 34.18
c:73 [VAL] 1:509 [U] 3.98 1:545 [A] 34.18
c:74 [THR] 1:609 [C] 4.8 1:596 [A] 48.42
c:74 [THR] 1:610 [A] 4.41 48.42
c:74 [THR] 1:611 [C] 3.71 48.42
c:75 [LEU] 1:597 [C] 3.8 1:608 [G] 36.67
c:76 [ARG] 1:508 [A] 4.5 1:547 [U] 45.7
c:77 [ARG] 1:508 [A] 3.69 1:547 [U] 64.87
c:77 [ARG] 1:509 [U] 2.77 1:545 [A] 64.87
c:77 [ARG] 1:610 [A] 2.44 64.87
c:77 [ARG] 1:611 [C] 4.03 64.87
c:78 [GLN] 1:597 [C] 2.5 1:608 [G] base:SC, sugar:SC 7.04
c:78 [GLN] 1:598 [G] 3.01 sugar:BB 7.04
c:78 [GLN] 1:599 [G] 4.94 7.04
c:78 [GLN] 1:608 [G] 4.23 1:597 [C] 7.04
c:78 [GLN] 1:609 [C] 4.36 1:596 [A] 7.04
c:78 [GLN] 1:610 [A] 3.34 7.04
c:80 [ALA] 1:510 [U] 4.98 1:544 [A] 42.23
c:81 [SER] 1:610 [A] 3.89 7.46
c:82 [HIS] 1:598 [G] 3.23 14.58
c:82 [HIS] 1:599 [G] 3.34 14.58
c:84 [ASN] 1:598 [G] 4.26 35.82
c:84 [ASN] 1:599 [G] 2.45 35.82
c:99 [ILE] 1:1215 [C] 4.31 1:1202 [G] 84.39
c:100 [ARG] 1:1213 [C] 4.95 1:1204 [G] 76.61
c:100 [ARG] 1:1214 [G] 2.52 1:1203 [C] 76.61
c:100 [ARG] 1:1215 [C] 3.57 1:1202 [G] 76.61
c:101 [GLY] 1:1215 [C] 3.27 1:1202 [G] 80.31
c:101 [GLY] 1:1216 [U] 2.99 80.31
c:102 [ILE] 1:1216 [U] 3.3 48.26
c:103 [ALA] 1:1197 [G] 4.92 1:1175 [C] 58.3
c:103 [ALA] 1:1215 [C] 3.34 1:1202 [G] 58.3
c:103 [ALA] 1:1216 [U] 4.28 58.3
c:104 [LYS] 1:1196 [G] 3.24 1:1176 [C] 38.6
c:104 [LYS] 1:1197 [G] 3.81 1:1175 [C] 38.6
c:104 [LYS] 1:1211 [A] 4.84 38.6
c:104 [LYS] 1:1212 [C] 2.75 1:1205 [G] 38.6
c:104 [LYS] 1:1213 [C] 2.59 1:1204 [G] 38.6
c:105 [VAL] 1:1196 [G] 3.47 1:1176 [C] 54.24
c:105 [VAL] 1:1197 [G] 4.66 1:1175 [C] 54.24
c:106 [ASN] 1:1195 [A] 2.32 1:1177 [U] sugar:SC 49.12
c:106 [ASN] 1:1196 [G] 4.0 1:1176 [C] 49.12
c:107 [PRO] 1:1035 [G] 2.55 sugar:BB 73.02
c:107 [PRO] 1:1195 [A] 3.2 1:1177 [U] 73.02
c:107 [PRO] 1:1196 [G] 3.7 1:1176 [C] 73.02
c:108 [LYS] 1:1035 [G] 3.76 62.14
c:108 [LYS] 1:1036 [U] 3.68 1:1156 [A] 62.14
c:108 [LYS] 1:1037 [A] 3.58 62.14
c:108 [LYS] 1:1108 [G] 3.51 1:1043 [C] 62.14
c:110 [ARG] 1:1035 [G] 3.99 62.4
c:110 [ARG] 1:1196 [G] 3.6 1:1176 [C] 62.4
c:111 [LYS] 1:1034 [A] 3.21 1:1157 [U] 81.39
c:111 [LYS] 1:1035 [G] 3.46 81.39
c:111 [LYS] 1:1036 [U] 3.75 1:1156 [A] 81.39
c:112 [ILE] 1:1036 [U] 3.28 1:1156 [A] 69.86
c:114 [GLN] 1:1158 [U] 4.16 1:1033 [A] 50.66
c:114 [GLN] 1:1159 [A] 4.88 50.66
c:115 [LEU] 1:1034 [A] 4.12 1:1157 [U] 77.13
c:115 [LEU] 1:1036 [U] 3.55 1:1156 [A] 77.13
c:115 [LEU] 1:1157 [U] 2.49 1:1034 [A] sugar:BB 77.13
c:115 [LEU] 1:1158 [U] 3.45 1:1033 [A] 77.13
c:116 [LEU] 1:1157 [U] 4.58 1:1034 [A] 72.35
c:117 [ARG] 1:1158 [U] 3.62 1:1033 [A] 86.4
c:117 [ARG] 1:1159 [A] 2.97 base:BB 86.4
c:118 [LEU] 1:1159 [A] 4.1 90.19
c:119 [ARG] 1:1159 [A] 3.33 base:BB 42.28
c:119 [ARG] 1:1160 [G] 2.36 42.28
c:120 [GLN] 1:1159 [A] 4.61 72.89
c:120 [GLN] 1:1402 [U] 4.55 1:1224 [A] 72.89
c:120 [GLN] 1:1403 [A] 2.44 1:1223 [U] 72.89
c:120 [GLN] 1:1404 [U] 3.24 1:1222 [A] 72.89
c:121 [ILE] 1:1215 [C] 3.73 1:1202 [G] 68.89
c:121 [ILE] 1:1216 [U] 4.31 68.89
c:121 [ILE] 1:1402 [U] 3.78 1:1224 [A] 68.89
c:121 [ILE] 1:1403 [A] 3.76 1:1223 [U] 68.89
c:122 [PHE] 1:1225 [U] 4.3 1:1400 [A] 78.11
c:122 [PHE] 1:1403 [A] 3.82 1:1223 [U] 78.11
c:123 [ASN] 1:1159 [A] 3.05 base:SC 71.46
c:123 [ASN] 1:1404 [U] 4.9 1:1222 [A] 71.46
c:128 [LYS] 1:1155 [A] 4.73 62.24
c:128 [LYS] 1:1156 [A] 3.66 1:1036 [U] 62.24
c:128 [LYS] 1:1157 [U] 3.05 1:1034 [A] 62.24
c:129 [MET] 1:1154 [G] 3.05 base:BB 59.63
c:130 [ASN] 1:1154 [G] 3.3 79.76
c:130 [ASN] 1:1155 [A] 3.22 79.76
c:130 [ASN] 1:1156 [A] 4.09 1:1036 [U] 79.76
c:131 [LYS] 1:1037 [A] 4.2 49.72
c:131 [LYS] 1:1038 [U] 3.92 1:1113 [A] 49.72
c:131 [LYS] 1:1039 [U] 3.34 1:1112 [A] 49.72
c:131 [LYS] 1:1154 [G] 3.09 49.72
c:132 [PRO] 1:1037 [A] 2.7 sugar:BB 75.06
c:132 [PRO] 1:1038 [U] 3.88 1:1113 [A] 75.06
c:132 [PRO] 1:1154 [G] 4.06 75.06
c:132 [PRO] 1:1155 [A] 4.76 75.06
c:132 [PRO] 1:1156 [A] 3.81 1:1036 [U] 75.06
c:133 [MET] 1:1037 [A] 4.75 74.16
c:133 [MET] 1:1156 [A] 3.89 1:1036 [U] 74.16
c:133 [MET] 1:1157 [U] 3.7 1:1034 [A] 74.16
c:134 [GLU] 1:1154 [G] 4.02 29.29
c:135 [ASN] 1:1037 [A] 3.48 39.3
c:135 [ASN] 1:1038 [U] 3.33 1:1113 [A] 39.3
c:136 [MET] 1:1036 [U] 3.62 1:1156 [A] 84.18
c:136 [MET] 1:1037 [A] 3.91 84.18
c:136 [MET] 1:1156 [A] 4.17 1:1036 [U] 84.18
c:136 [MET] 1:1157 [U] 4.82 1:1034 [A] 84.18
c:150 [SER] 1:549 [C] 3.49 1:506 [G] 77.91
c:150 [SER] 1:550 [A] 2.31 77.91
c:151 [LEU] 1:551 [A] 3.48 50.43
c:152 [ALA] 1:550 [A] 3.76 59.71
c:152 [ALA] 1:551 [A] 3.42 59.71
c:153 [THR] 1:550 [A] 3.37 83.21
c:155 [ARG] 1:551 [A] 4.28 77.15
c:160 [LYS] 1:500 [C] 3.55 1:560 [G] 93.67
c:161 [ARG] 1:1404 [U] 2.74 1:1222 [A] sugar:SC, sugar:SC 97.97
c:161 [ARG] 1:1405 [U] 4.47 1:1221 [G] 97.97
c:163 [TYR] 1:1405 [U] 3.6 1:1221 [G] 14.82
c:165 [LYS] 1:1159 [A] 3.14 57.33
c:167 [ASN] 1:1415 [A] 3.5 1:1451 [U] 62.9
c:168 [GLY] 1:1453 [C] 4.78 1:1412 [G] 30.27
c:169 [GLN] 1:1414 [A] 3.78 1:1452 [U] 47.13
c:169 [GLN] 1:1415 [A] 3.56 1:1451 [U] 47.13
c:169 [GLN] 1:1452 [U] 2.98 1:1414 [A] base:SC, sugar:SC 47.13
c:169 [GLN] 1:1453 [C] 3.25 1:1412 [G] base/AA stacks 47.13
c:170 [ARG] 1:1405 [U] 3.41 1:1221 [G] 80.88
c:170 [ARG] 1:1453 [C] 3.21 1:1412 [G] sugar:BB 80.88
c:170 [ARG] 1:1454 [C] 3.19 1:1411 [G] 80.88
c:171 [VAL] 1:1452 [U] 4.07 1:1414 [A] 65.63
c:171 [VAL] 1:1453 [C] 4.7 1:1412 [G] 65.63
c:206 [ARG] 1:1157 [U] 3.56 1:1034 [A] 78.74
c:206 [ARG] 1:1158 [U] 2.99 1:1033 [A] 78.74
c:206 [ARG] 1:1160 [G] 4.14 78.74
c:209 [THR] 1:1158 [U] 4.57 1:1033 [A] 69.14
c:210 [HIS] 1:1158 [U] 3.9 1:1033 [A] 69.65
c:210 [HIS] 1:1159 [A] 3.39 69.65
c:210 [HIS] 1:1160 [G] 4.74 69.65
c:213 [TRP] 1:1159 [A] 4.26 9.36
c:213 [TRP] 1:1454 [C] 4.21 1:1411 [G] 9.36
c:214 [PRO] 1:1159 [A] 3.83 81.67
c:216 [LYS] 1:1404 [U] 3.24 1:1222 [A] 71.08
c:216 [LYS] 1:1405 [U] 4.17 1:1221 [G] 71.08
c:217 [LEU] 1:1403 [A] 2.84 1:1223 [U] sugar:BB 94.36
c:217 [LEU] 1:1404 [U] 3.34 1:1222 [A] 94.36
c:218 [ALA] 1:1403 [A] 3.94 1:1223 [U] 64.81
c:218 [ALA] 1:1404 [U] 3.79 1:1222 [A] 64.81
c:219 [PRO] 1:1224 [A] 3.24 1:1402 [U] 58.5
c:219 [PRO] 1:1225 [U] 3.59 1:1400 [A] 58.5
c:219 [PRO] 1:1403 [A] 3.37 1:1223 [U] 58.5
c:219 [PRO] 1:1404 [U] 4.79 1:1222 [A] 58.5
c:220 [PRO] 1:1224 [A] 3.32 1:1402 [U] 85.0
c:220 [PRO] 1:1225 [U] 3.18 1:1400 [A] 85.0
c:221 [ALA] 1:1224 [A] 3.52 1:1402 [U] 34.11
c:221 [ALA] 1:1225 [U] 4.0 1:1400 [A] 34.11
c:221 [ALA] 1:1395 [U] 3.42 34.11
c:222 [GLY] 1:1224 [A] 3.85 1:1402 [U] 54.75
c:222 [GLY] 1:1225 [U] 2.97 1:1400 [A] 54.75
c:222 [GLY] 1:1395 [U] 3.24 54.75
c:222 [GLY] 1:1396 [G] 3.62 1:1230 [C] 54.75
c:223 [GLY] 1:1225 [U] 3.57 1:1400 [A] 82.42
c:223 [GLY] 1:1226 [G] 3.3 82.42
c:224 [MET] 1:1225 [U] 3.65 1:1400 [A] 37.34
c:224 [MET] 1:1226 [G] 2.75 37.34
c:224 [MET] 1:1227 [U] 4.4 1:1399 [C] 37.34
c:225 [ARG] 1:1226 [G] 5.0 24.55
c:225 [ARG] 1:1227 [U] 4.57 1:1399 [C] 24.55
c:226 [GLN] 1:1227 [U] 3.99 1:1399 [C] 36.9
c:227 [LYS] 1:1214 [G] 3.93 1:1203 [C] 85.32
c:227 [LYS] 1:1215 [C] 3.36 1:1202 [G] 85.32
c:227 [LYS] 1:1226 [G] 3.28 85.32
c:227 [LYS] 1:1227 [U] 3.02 1:1399 [C] 85.32
c:228 [ARG] 1:1227 [U] 4.24 1:1399 [C] 37.29
c:228 [ARG] 1:1228 [G] 3.5 1:1398 [C] 37.29
c:242 [THR] 1:548 [G] 3.58 1:507 [C] 24.49
c:242 [THR] 1:549 [C] 2.93 1:506 [G] 24.49
c:243 [LEU] 1:548 [G] 4.83 1:507 [C] 14.55
c:243 [LEU] 1:549 [C] 3.68 1:506 [G] 14.55
c:245 [ASN] 1:549 [C] 3.9 1:506 [G] 96.84
c:245 [ASN] 1:550 [A] 3.24 96.84
c:246 [ARG] 1:548 [G] 4.57 1:507 [C] 26.65
c:246 [ARG] 1:549 [C] 2.64 1:506 [G] 26.65
c:246 [ARG] 1:1395 [U] 4.97 26.65
c:249 [ALA] 1:1395 [U] 4.31 13.55
c:250 [ARG] 1:1395 [U] 3.61 61.69

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group124 6AZ3_c_1 c: 60s ribosomal protein l7 family protein, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) A0A504XVT8 Ribosomal protein L30p/L7e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 6AZ3_c_1 0.55 0.75 1.77 0.17 Ribosomal protein L30p/L7e compare
1VQ8_W_0 6AZ3_c_1 0.55 0.75 1.77 0.17 Ribosomal protein L30p/L7e compare
6AZ3_c_1 6S0Z_X_A 0.58 0.65 2.43 0.13 Ribosomal protein L30p/L7e compare
6AZ3_c_1 7O7Y_BF_B5 0.65 0.92 1.81 0.33 Ribosomal protein L30p/L7e Eukaryotic large subunit ribosomal RNA compare
6AZ3_c_1 7RYG_Y_A 0.57 0.63 2.5 0.19 Ribosomal protein L30p/L7e compare
6AZ3_c_1 7K00_y_a 0.70 0.64 2.52 0.23 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6AZ3_c_1 0.51 0.65 3.35 0.08 Ribosomal protein L30p/L7e compare