RNAprotDB

All interfaces > All interologs > Interface groups > group124 > 6AZ3_c_1 vs 6S0Z_X_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6AZ3_c
6AZ3_1
6S0Z_X
6S0Z_A
Conserved?
c:135 [ASN] 1:1037 [A] X:45 [GLY] A:896 [U] ✔
c:135 [ASN] 1:1038 [U] X:45 [GLY] A:897 [A] ✔
c:114 [GLN] 1:1159 [A] X:24 [GLU] A:975 [U] ✔
c:100 [ARG] 1:1214 [G] X:10 [ARG] A:1031 [C] ✔
c:100 [ARG] 1:1215 [C] X:10 [ARG] A:1032 [A] ✔
c:112 [ILE] 1:1036 [U] X:22 [THR] A:895 [U] ✔
c:103 [ALA] 1:1197 [G] X:13 [ILE] A:1014 [U] ✔
c:103 [ALA] 1:1215 [C] X:13 [ILE] A:1032 [A] ✔
c:103 [ALA] 1:1216 [U] X:13 [ILE] A:1033 [G] ✔
c:136 [MET] 1:1036 [U] X:46 [GLN] A:895 [U] ✔
c:136 [MET] 1:1037 [A] X:46 [GLN] A:896 [U] ✔
c:136 [MET] 1:1157 [U] X:46 [GLN] A:973 [A] ✔
c:132 [PRO] 1:1037 [A] X:42 [ALA] A:896 [U] ✔
c:132 [PRO] 1:1038 [U] X:42 [ALA] A:897 [A] ✔
c:132 [PRO] 1:1156 [A] X:42 [ALA] A:972 [A] ✔
c:104 [LYS] 1:1196 [G] X:14 [GLY] A:1013 [U] ✔
c:104 [LYS] 1:1197 [G] X:14 [GLY] A:1014 [U] ✔
c:117 [ARG] 1:1158 [U] X:27 [GLY] A:974 [U] ✔
c:117 [ARG] 1:1159 [A] X:27 [GLY] A:975 [U] ✔
c:115 [LEU] 1:1036 [U] X:25 [ALA] A:895 [U] ✔
c:115 [LEU] 1:1158 [U] X:25 [ALA] A:974 [U] ✔
c:110 [ARG] 1:1196 [G] X:20 [ARG] A:1013 [U] ✔
c:121 [ILE] 1:1215 [C] X:31 [THR] A:1032 [A] ✔
c:121 [ILE] 1:1216 [U] X:31 [THR] A:1033 [G] ✔
c:121 [ILE] 1:1402 [U] X:31 [THR] A:1201 [G] ✔
c:121 [ILE] 1:1403 [A] X:31 [THR] A:1202 [C] ✔
c:111 [LYS] 1:1035 [G] X:21 [LYS] A:894 [A] ✔
c:111 [LYS] 1:1036 [U] X:21 [LYS] A:895 [U] ✔
c:101 [GLY] 1:1215 [C] X:11 [SER] A:1032 [A] ✔
c:101 [GLY] 1:1216 [U] X:11 [SER] A:1033 [G] ✔
c:99 [ILE] 1:1215 [C] X:9 [THR] A:1032 [A] ✔
c:102 [ILE] 1:1216 [U] X:12 [VAL] A:1033 [G] ✔
c:105 [VAL] 1:1196 [G] X:15 [ARG] A:1013 [U] ✔
c:106 [ASN] 1:1195 [A] X:16 [PRO] A:1012 [G] ✔
c:106 [ASN] 1:1196 [G] X:16 [PRO] A:1013 [U] ✔
c:122 [PHE] 1:1403 [A] X:32 [ASN] A:1202 [C] ✔
c:120 [GLN] 1:1403 [A] X:30 [LYS] A:1202 [C] ✔
c:108 [LYS] 1:1036 [U] X:18 [THR] A:895 [U] ✔
c:107 [PRO] 1:1195 [A] X:17 [GLU] A:1012 [G] ✔
c:107 [PRO] 1:1196 [G] X:17 [GLU] A:1013 [U] ✔
c:133 [MET] 1:1037 [A] X:43 [ILE] A:896 [U] ✔
c:133 [MET] 1:1157 [U] X:43 [ILE] A:973 [A] ✔
c:114 [GLN] 1:1158 [U] X:24 [GLU] A:974 [U] ❌ 6S0Z_X_A
c:130 [ASN] 1:1156 [A] X:41 [PRO] A:972 [A] ❌ 6S0Z_X_A
c:136 [MET] 1:1156 [A] X:46 [GLN] A:972 [A] ❌ 6S0Z_X_A
c:115 [LEU] 1:1157 [U] X:25 [ALA] A:973 [A] ❌ 6S0Z_X_A
c:110 [ARG] 1:1035 [G] X:20 [ARG] A:894 [A] ❌ 6S0Z_X_A
c:105 [VAL] 1:1197 [G] X:15 [ARG] A:1014 [U] ❌ 6S0Z_X_A
c:120 [GLN] 1:1159 [A] X:30 [LYS] A:975 [U] ❌ 6S0Z_X_A
c:120 [GLN] 1:1402 [U] X:30 [LYS] A:1201 [G] ❌ 6S0Z_X_A
c:116 [LEU] 1:1157 [U] X:26 [LEU] A:973 [A] ❌ 6S0Z_X_A
c:108 [LYS] 1:1035 [G] X:18 [THR] A:894 [A] ❌ 6S0Z_X_A
c:108 [LYS] 1:1037 [A] X:18 [THR] A:896 [U] ❌ 6S0Z_X_A
c:119 [ARG] 1:1159 [A] X:29 [LYS] A:975 [U] ❌ 6S0Z_X_A
c:119 [ARG] 1:1160 [G] X:29 [LYS] A:976 [U] ❌ 6S0Z_X_A
c:107 [PRO] 1:1035 [G] X:17 [GLU] A:894 [A] ❌ 6S0Z_X_A
c:133 [MET] 1:1156 [A] X:43 [ILE] A:972 [A] ❌ 6S0Z_X_A
c:100 [ARG] 1:1226 [G] X:10 [ARG] A:1044 [A] ❌ 6AZ3_c_1
c:101 [GLY] 1:1214 [G] X:11 [SER] A:1031 [C] ❌ 6AZ3_c_1
c:103 [ALA] 1:1196 [G] X:13 [ILE] A:1013 [U] ❌ 6AZ3_c_1
c:105 [VAL] 1:1214 [G] X:15 [ARG] A:1031 [C] ❌ 6AZ3_c_1
c:105 [VAL] 1:1195 [A] X:15 [ARG] A:1012 [G] ❌ 6AZ3_c_1
c:110 [ARG] 1:1197 [G] X:20 [ARG] A:1014 [U] ❌ 6AZ3_c_1
c:112 [ILE] 1:1037 [A] X:22 [THR] A:896 [U] ❌ 6AZ3_c_1
c:114 [GLN] 1:1160 [G] X:24 [GLU] A:976 [U] ❌ 6AZ3_c_1
c:115 [LEU] 1:1035 [G] X:25 [ALA] A:894 [A] ❌ 6AZ3_c_1
c:115 [LEU] 1:1159 [A] X:25 [ALA] A:975 [U] ❌ 6AZ3_c_1
c:116 [LEU] 1:1158 [U] X:26 [LEU] A:974 [U] ❌ 6AZ3_c_1
c:116 [LEU] 1:1159 [A] X:26 [LEU] A:975 [U] ❌ 6AZ3_c_1
c:119 [ARG] 1:1454 [C] X:29 [LYS] A:1222 [A] ❌ 6AZ3_c_1
c:122 [PHE] 1:1402 [U] X:32 [ASN] A:1201 [G] ❌ 6AZ3_c_1
c:129 [MET] 1:1157 [U] X:40 [ASN] A:973 [A] ❌ 6AZ3_c_1
c:130 [ASN] 1:1038 [U] X:41 [PRO] A:897 [A] ❌ 6AZ3_c_1
c:130 [ASN] 1:1037 [A] X:41 [PRO] A:896 [U] ❌ 6AZ3_c_1
c:132 [PRO] 1:1157 [U] X:42 [ALA] A:973 [A] ❌ 6AZ3_c_1
c:133 [MET] 1:1158 [U] X:43 [ILE] A:974 [U] ❌ 6AZ3_c_1
c:136 [MET] 1:1158 [U] X:46 [GLN] A:974 [U] ❌ 6AZ3_c_1
c:100 [ARG] 1:1213 [C] X:10 [ARG] A:1030 [C] ❌ 6S0Z_A:1030 no longer at interface
c:104 [LYS] 1:1211 [A] X:14 [GLY] A:1028 [G] ❌ 6S0Z_A:1028 no longer at interface
c:104 [LYS] 1:1212 [C] X:14 [GLY] A:1029 [C] ❌ 6S0Z_A:1029 no longer at interface
c:104 [LYS] 1:1213 [C] X:14 [GLY] A:1030 [C] ❌ 6S0Z_A:1030 no longer at interface
c:115 [LEU] 1:1034 [A] X:25 [ALA] A:893 [G] ❌ 6S0Z_A:893 no longer at interface
c:111 [LYS] 1:1034 [A] X:21 [LYS] A:893 [G] ❌ 6S0Z_A:893 no longer at interface
c:122 [PHE] 1:1225 [U] X:32 [ASN] A:1043 [U] ❌ 6S0Z_A:1043 no longer at interface
c:120 [GLN] 1:1404 [U] X:30 [LYS] A:1203 [U] ❌ 6S0Z_A:1203 no longer at interface
c:108 [LYS] 1:1108 [G] X:18 [THR] A:965 [G] ❌ 6S0Z_A:965 no longer at interface
c:123 [ASN] 1:1404 [U] X:33 [SER] A:1203 [U] ❌ 6S0Z_X:33, 6S0Z_A:1203 no longer at interface
c:114 [GLN] 1:1161 [A] X:24 [GLU] A:977 [A] ❌ 6AZ3_1:1161 no longer at interface
c:119 [ARG] 1:1455 [G] X:29 [LYS] A:1223 [A] ❌ 6AZ3_1:1455 no longer at interface
c:120 [GLN] 1:1456 [A] X:30 [LYS] A:1224 [U] ❌ 6AZ3_1:1456 no longer at interface
c:120 [GLN] 1:1455 [G] X:30 [LYS] A:1223 [A] ❌ 6AZ3_1:1455 no longer at interface
c:128 [LYS] 1:1156 [A] X:39 [ASP] A:972 [A] ❌ 6S0Z_X:39 no longer at interface
c:128 [LYS] 1:1157 [U] X:39 [ASP] A:973 [A] ❌ 6S0Z_X:39 no longer at interface
c:118 [LEU] 1:1159 [A] X:28 [LEU] A:975 [U] ❌ 6S0Z_X:28 no longer at interface
c:123 [ASN] 1:1159 [A] X:33 [SER] A:975 [U] ❌ 6S0Z_X:33 no longer at interface
c:126 [PHE] 1:1158 [U] X:37 [VAL] A:974 [U] ❌ 6AZ3_c:126 no longer at interface
c:127 [VAL] 1:1158 [U] X:38 [GLU] A:974 [U] ❌ 6AZ3_c:127 no longer at interface
c:127 [VAL] 1:1157 [U] X:38 [GLU] A:973 [A] ❌ 6AZ3_c:127 no longer at interface
c:139 [ALA] 1:1036 [U] X:49 [LYS] A:895 [U] ❌ 6AZ3_c:139 no longer at interface
c:139 [ALA] 1:1037 [A] X:49 [LYS] A:896 [U] ❌ 6AZ3_c:139 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L30p/L7e 0.65 2.43 0.13 0.9 0.71 0.9 0.86 0.58 0.49 0.16 0.40


Other pairs involving 6AZ3_c_1 or 6S0Z_X_A

Total number of entries: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_W_0 6AZ3_c_1 0.55 0.75 1.77 0.17 Ribosomal protein L30p/L7e compare
1VQ8_W_0 6S0Z_X_A 0.69 0.9 1.68 0.27 Ribosomal protein L30p/L7e compare
1YHQ_W_0 6S0Z_X_A 0.68 0.9 1.63 0.27 Ribosomal protein L30p/L7e compare
1YHQ_W_0 6AZ3_c_1 0.55 0.75 1.77 0.17 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6S0Z_X_A 0.79 0.97 1.8 0.38 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 6AZ3_c_1 0.51 0.65 3.35 0.08 Ribosomal protein L30p/L7e compare
6AZ3_c_1 6S0Z_X_A 0.58 0.65 2.43 0.13 Ribosomal protein L30p/L7e compare
6AZ3_c_1 7O7Y_BF_B5 0.65 0.92 1.81 0.33 Ribosomal protein L30p/L7e Eukaryotic large subunit ribosomal RNA compare
6AZ3_c_1 7RYG_Y_A 0.57 0.63 2.5 0.19 Ribosomal protein L30p/L7e compare
6AZ3_c_1 7K00_y_a 0.70 0.64 2.52 0.23 Ribosomal protein L30p/L7e compare
6S0Z_X_A 7O7Y_BF_B5 0.72 0.89 2.16 0.17 Ribosomal protein L30p/L7e compare
6S0Z_X_A 7OF0_Z_A 0.62 0.93 2.4 0.18 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7K00_y_a 0.76 0.97 0.92 0.43 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7RYG_Y_A 0.68 0.98 2.14 0.27 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare