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All interfaces > All interologs > Interface groups > group124 > 6S0Z_X_A

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0Z_X
6S0Z_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
X:9 [THR] A:1032 [A] 4.75 50.87
X:10 [ARG] A:1031 [C] 3.33 A:1020 [G] 67.63
X:10 [ARG] A:1032 [A] 3.36 67.63
X:10 [ARG] A:1044 [A] 4.79 67.63
X:11 [SER] A:1031 [C] 4.68 A:1020 [G] 99.0
X:11 [SER] A:1032 [A] 2.78 99.0
X:11 [SER] A:1033 [G] 3.08 A:1019 [A] 99.0
X:12 [VAL] A:1033 [G] 4.77 A:1019 [A] 12.53
X:13 [ILE] A:1013 [U] 4.96 A:992 [A] 74.83
X:13 [ILE] A:1014 [U] 4.31 A:991 [A] 74.83
X:13 [ILE] A:1032 [A] 3.62 74.83
X:13 [ILE] A:1033 [G] 3.23 A:1019 [A] 74.83
X:14 [GLY] A:1013 [U] 3.51 A:992 [A] 68.83
X:14 [GLY] A:1014 [U] 3.58 A:991 [A] 68.83
X:15 [ARG] A:1012 [G] 4.96 A:993 [C] 31.07
X:15 [ARG] A:1013 [U] 3.33 A:992 [A] 31.07
X:15 [ARG] A:1031 [C] 4.09 A:1020 [G] 31.07
X:16 [PRO] A:1012 [G] 3.96 A:993 [C] 38.09
X:16 [PRO] A:1013 [U] 4.2 A:992 [A] 38.09
X:17 [GLU] A:1012 [G] 4.62 A:993 [C] 18.95
X:17 [GLU] A:1013 [U] 3.82 A:992 [A] 18.95
X:18 [THR] A:895 [U] 4.82 A:973 [A] 17.25
X:20 [ARG] A:1013 [U] 2.94 A:992 [A] 67.46
X:20 [ARG] A:1014 [U] 3.94 A:991 [A] 67.46
X:21 [LYS] A:894 [A] 3.47 A:974 [U] 21.01
X:21 [LYS] A:895 [U] 3.86 A:973 [A] 21.01
X:22 [THR] A:895 [U] 3.02 A:973 [A] sugar:SC 76.5
X:22 [THR] A:896 [U] 4.93 A:972 [A] 76.5
X:24 [GLU] A:975 [U] 3.37 A:893 [G] 36.3
X:24 [GLU] A:976 [U] 4.14 36.3
X:24 [GLU] A:977 [A] 4.26 A:892 [U] 36.3
X:25 [ALA] A:894 [A] 4.19 A:974 [U] 62.12
X:25 [ALA] A:895 [U] 4.18 A:973 [A] 62.12
X:25 [ALA] A:974 [U] 2.74 A:894 [A] sugar:BB 62.12
X:25 [ALA] A:975 [U] 3.28 A:893 [G] sugar:BB 62.12
X:26 [LEU] A:974 [U] 4.0 A:894 [A] 97.81
X:26 [LEU] A:975 [U] 4.83 A:893 [G] 97.81
X:27 [GLY] A:974 [U] 4.72 A:894 [A] 98.86
X:27 [GLY] A:975 [U] 4.43 A:893 [G] 98.86
X:29 [LYS] A:1222 [A] 4.73 A:1210 [U] 46.48
X:29 [LYS] A:1223 [A] 4.49 A:1209 [U] 46.48
X:30 [LYS] A:1202 [C] 4.03 A:1041 [G] 74.5
X:30 [LYS] A:1223 [A] 3.44 A:1209 [U] 74.5
X:30 [LYS] A:1224 [U] 3.13 A:1208 [A] 74.5
X:31 [THR] A:1032 [A] 4.28 61.78
X:31 [THR] A:1033 [G] 3.22 A:1019 [A] 61.78
X:31 [THR] A:1201 [G] 3.04 A:1042 [C] sugar:SC 61.78
X:31 [THR] A:1202 [C] 3.59 A:1041 [G] 61.78
X:32 [ASN] A:1201 [G] 4.83 A:1042 [C] 68.16
X:32 [ASN] A:1202 [C] 3.68 A:1041 [G] sugar:SC 68.16
X:37 [VAL] A:974 [U] 4.51 A:894 [A] 0.0
X:38 [GLU] A:973 [A] 4.41 A:895 [U] 3.61
X:38 [GLU] A:974 [U] 4.41 A:894 [A] 3.61
X:40 [ASN] A:973 [A] 2.97 A:895 [U] sugar:SC 75.27
X:41 [PRO] A:896 [U] 4.29 A:972 [A] 65.98
X:41 [PRO] A:897 [A] 3.88 A:971 [U] 65.98
X:42 [ALA] A:896 [U] 2.56 A:972 [A] sugar:BB 41.09
X:42 [ALA] A:897 [A] 3.62 A:971 [U] 41.09
X:42 [ALA] A:972 [A] 4.66 A:896 [U] 41.09
X:42 [ALA] A:973 [A] 4.27 A:895 [U] 41.09
X:43 [ILE] A:896 [U] 4.71 A:972 [A] 67.11
X:43 [ILE] A:973 [A] 4.54 A:895 [U] 67.11
X:43 [ILE] A:974 [U] 4.34 A:894 [A] 67.11
X:45 [GLY] A:896 [U] 3.3 A:972 [A] 98.21
X:45 [GLY] A:897 [A] 4.12 A:971 [U] 98.21
X:46 [GLN] A:895 [U] 2.86 A:973 [A] base:SC 86.01
X:46 [GLN] A:896 [U] 3.23 A:972 [A] 86.01
X:46 [GLN] A:973 [A] 4.39 A:895 [U] 86.01
X:46 [GLN] A:974 [U] 4.36 A:894 [A] 86.01
X:49 [LYS] A:895 [U] 3.25 A:973 [A] 65.21
X:49 [LYS] A:896 [U] 3.23 A:972 [A] 65.21

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group124 6S0Z_X_A X: 50s ribosomal protein l30, Staphylococcus aureus (natural) A: 23s ribosomal RNA, Staphylococcus aureus (natural) W8UVN7 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 6S0Z_X_A 0.68 0.9 1.63 0.27 Ribosomal protein L30p/L7e compare
1VQ8_W_0 6S0Z_X_A 0.69 0.9 1.68 0.27 Ribosomal protein L30p/L7e compare
6AZ3_c_1 6S0Z_X_A 0.58 0.65 2.43 0.13 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6S0Z_X_A 0.79 0.97 1.8 0.38 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7O7Y_BF_B5 0.72 0.89 2.16 0.17 Ribosomal protein L30p/L7e compare
6S0Z_X_A 7OF0_Z_A 0.62 0.93 2.4 0.18 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7K00_y_a 0.76 0.97 0.92 0.43 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7RYG_Y_A 0.68 0.98 2.14 0.27 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare