RNAprotDB

All interfaces > All interologs > Interface groups > group124 > 6S0Z_X_A vs 7K00_y_a

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6S0Z_X
6S0Z_A
7K00_y
7K00_a
Conserved?
X:13 [ILE] A:1014 [U] y:14 [ILE] a:970 [U] ✔
X:13 [ILE] A:1032 [A] y:14 [ILE] a:988 [A] ✔
X:13 [ILE] A:1033 [G] y:14 [ILE] a:989 [G] ✔
X:32 [ASN] A:1202 [C] y:33 [GLY] a:1158 [C] ✔
X:11 [SER] A:1032 [A] y:12 [SER] a:988 [A] ✔
X:11 [SER] A:1033 [G] y:12 [SER] a:989 [G] ✔
X:45 [GLY] A:896 [U] y:46 [GLY] a:851 [C] ✔
X:45 [GLY] A:897 [A] y:46 [GLY] a:852 [U] ✔
X:25 [ALA] A:895 [U] y:26 [GLY] a:850 [U] ✔
X:25 [ALA] A:974 [U] y:26 [GLY] a:929 [U] ✔
X:43 [ILE] A:896 [U] y:44 [ILE] a:851 [C] ✔
X:43 [ILE] A:973 [A] y:44 [ILE] a:928 [A] ✔
X:18 [THR] A:895 [U] y:19 [LYS] a:850 [U] ✔
X:10 [ARG] A:1032 [A] y:11 [ARG] a:988 [A] ✔
X:21 [LYS] A:894 [A] y:22 [ALA] a:849 [A] ✔
X:21 [LYS] A:895 [U] y:22 [ALA] a:850 [U] ✔
X:16 [PRO] A:1012 [G] y:17 [LEU] a:968 [C] ✔
X:31 [THR] A:1032 [A] y:32 [ILE] a:988 [A] ✔
X:31 [THR] A:1033 [G] y:32 [ILE] a:989 [G] ✔
X:31 [THR] A:1201 [G] y:32 [ILE] a:1157 [G] ✔
X:31 [THR] A:1202 [C] y:32 [ILE] a:1158 [C] ✔
X:12 [VAL] A:1033 [G] y:13 [ALA] a:989 [G] ✔
X:22 [THR] A:895 [U] y:23 [THR] a:850 [U] ✔
X:22 [THR] A:896 [U] y:23 [THR] a:851 [C] ✔
X:37 [VAL] A:974 [U] y:38 [ARG] a:929 [U] ✔
X:17 [GLU] A:1012 [G] y:18 [PRO] a:968 [C] ✔
X:17 [GLU] A:1013 [U] y:18 [PRO] a:969 [G] ✔
X:42 [ALA] A:896 [U] y:43 [ALA] a:851 [C] ✔
X:42 [ALA] A:897 [A] y:43 [ALA] a:852 [U] ✔
X:42 [ALA] A:972 [A] y:43 [ALA] a:927 [A] ✔
X:41 [PRO] A:896 [U] y:42 [PRO] a:851 [C] ✔
X:41 [PRO] A:897 [A] y:42 [PRO] a:852 [U] ✔
X:30 [LYS] A:1202 [C] y:31 [ARG] a:1158 [C] ✔
X:30 [LYS] A:1223 [A] y:31 [ARG] a:1184 [U] ✔
X:24 [GLU] A:975 [U] y:25 [LEU] a:930 [G] ✔
X:38 [GLU] A:973 [A] y:39 [GLU] a:928 [A] ✔
X:26 [LEU] A:974 [U] y:27 [LEU] a:929 [U] ✔
X:20 [ARG] A:1013 [U] y:21 [LYS] a:969 [G] ✔
X:20 [ARG] A:1014 [U] y:21 [LYS] a:970 [U] ✔
X:15 [ARG] A:1012 [G] y:16 [ARG] a:968 [C] ✔
X:15 [ARG] A:1013 [U] y:16 [ARG] a:969 [G] ✔
X:49 [LYS] A:896 [U] y:50 [ALA] a:851 [C] ✔
X:46 [GLN] A:895 [U] y:47 [MET] a:850 [U] ✔
X:46 [GLN] A:896 [U] y:47 [MET] a:851 [C] ✔
X:46 [GLN] A:973 [A] y:47 [MET] a:928 [A] ✔
X:27 [GLY] A:974 [U] y:28 [GLY] a:929 [U] ✔
X:27 [GLY] A:975 [U] y:28 [GLY] a:930 [G] ✔
X:29 [LYS] A:1222 [A] y:30 [ARG] a:1183 [U] ✔
X:29 [LYS] A:1223 [A] y:30 [ARG] a:1184 [U] ✔
X:14 [GLY] A:1013 [U] y:15 [GLY] a:969 [G] ✔
X:14 [GLY] A:1014 [U] y:15 [GLY] a:970 [U] ✔
X:13 [ILE] A:1013 [U] y:14 [ILE] a:969 [G] ❌ 7K00_y_a
X:32 [ASN] A:1201 [G] y:33 [GLY] a:1157 [G] ❌ 7K00_y_a
X:25 [ALA] A:894 [A] y:26 [GLY] a:849 [A] ❌ 7K00_y_a
X:25 [ALA] A:975 [U] y:26 [GLY] a:930 [G] ❌ 7K00_y_a
X:43 [ILE] A:974 [U] y:44 [ILE] a:929 [U] ❌ 7K00_y_a
X:16 [PRO] A:1013 [U] y:17 [LEU] a:969 [G] ❌ 7K00_y_a
X:40 [ASN] A:973 [A] y:41 [THR] a:928 [A] ❌ 7K00_y_a
X:42 [ALA] A:973 [A] y:43 [ALA] a:928 [A] ❌ 7K00_y_a
X:24 [GLU] A:976 [U] y:25 [LEU] a:931 [U] ❌ 7K00_y_a
X:38 [GLU] A:974 [U] y:39 [GLU] a:929 [U] ❌ 7K00_y_a
X:26 [LEU] A:975 [U] y:27 [LEU] a:930 [G] ❌ 7K00_y_a
X:49 [LYS] A:895 [U] y:50 [ALA] a:850 [U] ❌ 7K00_y_a
X:46 [GLN] A:974 [U] y:47 [MET] a:929 [U] ❌ 7K00_y_a
X:15 [ARG] A:1032 [A] y:16 [ARG] a:988 [A] ❌ 6S0Z_X_A
X:18 [THR] A:896 [U] y:19 [LYS] a:851 [C] ❌ 6S0Z_X_A
X:24 [GLU] A:974 [U] y:25 [LEU] a:929 [U] ❌ 6S0Z_X_A
X:24 [GLU] A:894 [A] y:25 [LEU] a:849 [A] ❌ 6S0Z_X_A
X:25 [ALA] A:973 [A] y:26 [GLY] a:928 [A] ❌ 6S0Z_X_A
X:29 [LYS] A:975 [U] y:30 [ARG] a:930 [G] ❌ 6S0Z_X_A
X:29 [LYS] A:976 [U] y:30 [ARG] a:931 [U] ❌ 6S0Z_X_A
X:30 [LYS] A:1222 [A] y:31 [ARG] a:1183 [U] ❌ 6S0Z_X_A
X:37 [VAL] A:975 [U] y:38 [ARG] a:930 [G] ❌ 6S0Z_X_A
X:37 [VAL] A:973 [A] y:38 [ARG] a:928 [A] ❌ 6S0Z_X_A
X:40 [ASN] A:972 [A] y:41 [THR] a:927 [A] ❌ 6S0Z_X_A
X:43 [ILE] A:972 [A] y:44 [ILE] a:927 [A] ❌ 6S0Z_X_A
X:46 [GLN] A:972 [A] y:47 [MET] a:927 [A] ❌ 6S0Z_X_A
X:11 [SER] A:1031 [C] y:12 [SER] a:987 [C] ❌ 7K00_a:987 no longer at interface
X:10 [ARG] A:1031 [C] y:11 [ARG] a:987 [C] ❌ 7K00_a:987 no longer at interface
X:10 [ARG] A:1044 [A] y:11 [ARG] a:1000 [A] ❌ 7K00_a:1000 no longer at interface
X:30 [LYS] A:1224 [U] y:31 [ARG] a:1185 [G] ❌ 7K00_a:1185 no longer at interface
X:24 [GLU] A:977 [A] y:25 [LEU] a:933 [A] ❌ 7K00_a:933 no longer at interface
X:15 [ARG] A:1031 [C] y:16 [ARG] a:987 [C] ❌ 7K00_a:987 no longer at interface
X:18 [THR] A:965 [G] y:19 [LYS] a:920 [A] ❌ 6S0Z_A:965 no longer at interface
X:30 [LYS] A:1203 [U] y:31 [ARG] a:1159 [U] ❌ 6S0Z_A:1203 no longer at interface
X:42 [ALA] A:971 [U] y:43 [ALA] a:926 [G] ❌ 6S0Z_A:971 no longer at interface
X:9 [THR] A:1032 [A] y:10 [THR] a:988 [A] ❌ 7K00_y:10 no longer at interface
X:44 [ARG] A:896 [U] y:45 [ARG] a:851 [C] ❌ 6S0Z_X:44 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA 0.97 0.92 0.43 0.93 0.97 0.97 0.86 0.76 0.58 0.16 0.30


Other pairs involving 6S0Z_X_A or 7K00_y_a

Total number of entries: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 6S0Z_X_A 0.68 0.9 1.63 0.27 Ribosomal protein L30p/L7e compare
1VQ8_W_0 6S0Z_X_A 0.69 0.9 1.68 0.27 Ribosomal protein L30p/L7e compare
6AZ3_c_1 6S0Z_X_A 0.58 0.65 2.43 0.13 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 6S0Z_X_A 0.79 0.97 1.8 0.38 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
1YHQ_W_0 7K00_y_a 0.71 0.91 1.82 0.23 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7K00_y_a 0.71 0.91 1.84 0.23 Ribosomal protein L30p/L7e compare
6AZ3_c_1 7K00_y_a 0.70 0.64 2.52 0.23 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 7K00_y_a 0.76 0.96 1.81 0.29 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7K00_y_a 0.76 0.97 0.92 0.43 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7O7Y_BF_B5 0.72 0.89 2.16 0.17 Ribosomal protein L30p/L7e compare
6S0Z_X_A 7OF0_Z_A 0.62 0.93 2.4 0.18 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7RYG_Y_A 0.68 0.98 2.14 0.27 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare