RNAprotDB

All interfaces > All interologs > Interface groups > group124 > 7K00_y_a

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7K00_y
7K00_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
y:11 [ARG] a:988 [A] 3.69 68.32
y:12 [SER] a:988 [A] 2.87 99.0
y:12 [SER] a:989 [G] 2.65 a:975 [A] 99.0
y:13 [ALA] a:989 [G] 4.64 a:975 [A] 7.2
y:14 [ILE] a:970 [U] 4.61 a:947 [A] 80.61
y:14 [ILE] a:988 [A] 3.71 80.61
y:14 [ILE] a:989 [G] 3.3 a:975 [A] 80.61
y:15 [GLY] a:969 [G] 3.29 a:948 [C] 68.95
y:15 [GLY] a:970 [U] 3.8 a:947 [A] 68.95
y:16 [ARG] a:968 [C] 4.92 a:949 [G] 31.96
y:16 [ARG] a:969 [G] 3.76 a:948 [C] 31.96
y:16 [ARG] a:988 [A] 4.85 31.96
y:17 [LEU] a:968 [C] 4.02 a:949 [G] 8.14
y:18 [PRO] a:968 [C] 3.48 a:949 [G] 0.11
y:18 [PRO] a:969 [G] 3.65 a:948 [C] 0.11
y:19 [LYS] a:850 [U] 3.87 a:928 [A] 0.0
y:19 [LYS] a:851 [C] 3.32 a:926 [G] 0.0
y:19 [LYS] a:920 [A] 3.29 a:857 [G] 0.0
y:21 [LYS] a:969 [G] 4.99 a:948 [C] 65.82
y:21 [LYS] a:970 [U] 4.28 a:947 [A] 65.82
y:22 [ALA] a:849 [A] 3.15 a:929 [U] 1.99
y:22 [ALA] a:850 [U] 3.38 a:928 [A] 1.99
y:23 [THR] a:850 [U] 2.62 a:928 [A] sugar:SC 81.03
y:23 [THR] a:851 [C] 4.39 a:926 [G] 81.03
y:25 [LEU] a:849 [A] 3.94 a:929 [U] 29.58
y:25 [LEU] a:929 [U] 2.74 a:849 [A] sugar:BB 29.58
y:25 [LEU] a:930 [G] 3.39 a:848 [C] 29.58
y:26 [GLY] a:850 [U] 3.42 a:928 [A] 68.96
y:26 [GLY] a:928 [A] 3.89 a:850 [U] 68.96
y:26 [GLY] a:929 [U] 3.34 a:849 [A] 68.96
y:27 [LEU] a:929 [U] 3.93 a:849 [A] 98.74
y:28 [GLY] a:929 [U] 3.21 a:849 [A] 98.86
y:28 [GLY] a:930 [G] 4.62 a:848 [C] 98.86
y:30 [ARG] a:930 [G] 3.37 a:848 [C] 43.4
y:30 [ARG] a:931 [U] 3.0 43.4
y:30 [ARG] a:1183 [U] 3.47 a:1166 [G] 43.4
y:30 [ARG] a:1184 [U] 3.77 a:1165 [A] 43.4
y:31 [ARG] a:1158 [C] 4.24 a:997 [G] 76.08
y:31 [ARG] a:1159 [U] 4.25 a:996 [A] 76.08
y:31 [ARG] a:1183 [U] 4.26 a:1166 [G] 76.08
y:31 [ARG] a:1184 [U] 2.88 a:1165 [A] 76.08
y:32 [ILE] a:988 [A] 3.71 47.9
y:32 [ILE] a:989 [G] 3.84 a:975 [A] 47.9
y:32 [ILE] a:1157 [G] 3.79 a:998 [C] 47.9
y:32 [ILE] a:1158 [C] 3.54 a:997 [G] 47.9
y:33 [GLY] a:1158 [C] 4.99 a:997 [G] 50.24
y:38 [ARG] a:928 [A] 3.61 a:850 [U] 26.18
y:38 [ARG] a:929 [U] 3.51 a:849 [A] 26.18
y:38 [ARG] a:930 [G] 4.51 a:848 [C] 26.18
y:39 [GLU] a:928 [A] 4.5 a:850 [U] 4.5
y:41 [THR] a:927 [A] 4.52 77.47
y:42 [PRO] a:851 [C] 4.12 a:926 [G] 64.53
y:42 [PRO] a:852 [U] 4.1 a:925 [A] 64.53
y:43 [ALA] a:851 [C] 2.66 a:926 [G] sugar:BB 32.24
y:43 [ALA] a:852 [U] 3.81 a:925 [A] 32.24
y:43 [ALA] a:926 [G] 3.65 a:851 [C] 32.24
y:43 [ALA] a:927 [A] 3.76 32.24
y:44 [ILE] a:851 [C] 4.72 a:926 [G] 57.31
y:44 [ILE] a:927 [A] 4.36 57.31
y:44 [ILE] a:928 [A] 4.33 a:850 [U] 57.31
y:45 [ARG] a:851 [C] 4.93 a:926 [G] 69.27
y:46 [GLY] a:851 [C] 3.2 a:926 [G] 98.86
y:46 [GLY] a:852 [U] 4.01 a:925 [A] 98.86
y:47 [MET] a:850 [U] 3.14 a:928 [A] 81.21
y:47 [MET] a:851 [C] 3.07 a:926 [G] 81.21
y:47 [MET] a:927 [A] 3.25 81.21
y:47 [MET] a:928 [A] 3.76 a:850 [U] 81.21
y:50 [ALA] a:851 [C] 4.35 a:926 [G] 67.76

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group124 7K00_y_a y: 50s ribosomal protein l30, Escherichia coli (natural) a: 23s rRNA, Escherichia coli (natural) P0AG51 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 7K00_y_a 0.71 0.91 1.82 0.23 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7K00_y_a 0.71 0.91 1.84 0.23 Ribosomal protein L30p/L7e compare
6AZ3_c_1 7K00_y_a 0.70 0.64 2.52 0.23 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 7K00_y_a 0.76 0.96 1.81 0.29 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7K00_y_a 0.76 0.97 0.92 0.43 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare