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All interfaces > All interologs > Interface groups > group124 > 7O7Y_BF_B5

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7O7Y_BF
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BF:22 [ARG] B5:866 [A] 3.28 sugar:SC base/AA stacks 68.9
BF:22 [ARG] B5:2034 [A] 3.81 B5:869 [U] 68.9
BF:22 [ARG] B5:2035 [G] 3.48 B5:868 [C] base:SC, base:SC 68.9
BF:24 [PHE] B5:865 [G] 3.34 base/AA stacks 38.7
BF:24 [PHE] B5:866 [A] 3.29 base/AA stacks 38.7
BF:24 [PHE] B5:2035 [G] 3.91 B5:868 [C] 38.7
BF:25 [ALA] B5:866 [A] 3.33 49.8
BF:25 [ALA] B5:867 [C] 4.35 49.8
BF:27 [LEU] B5:2046 [A] 4.52 3.1
BF:28 [LYS] B5:864 [A] 3.92 42.2
BF:28 [LYS] B5:865 [G] 2.51 base:SC 42.2
BF:28 [LYS] B5:866 [A] 4.73 42.2
BF:29 [ILE] B5:1216 [C] 3.59 34.5
BF:30 [LYS] B5:1394 [U] 4.04 37.8
BF:30 [LYS] B5:1395 [U] 4.41 B5:2053 [A] 37.8
BF:30 [LYS] B5:2047 [G] 3.83 B5:1401 [C] 37.8
BF:31 [ARG] B5:865 [G] 4.5 60.5
BF:31 [ARG] B5:2035 [G] 4.47 B5:868 [C] 60.5
BF:31 [ARG] B5:2036 [A] 3.16 60.5
BF:31 [ARG] B5:2046 [A] 3.09 base/AA stacks 60.5
BF:32 [LEU] B5:1216 [C] 3.4 46.5
BF:33 [ARG] B5:1215 [G] 3.45 28.1
BF:33 [ARG] B5:1216 [C] 3.21 28.1
BF:33 [ARG] B5:1394 [U] 2.32 sugar:SC, sugar:SC 28.1
BF:33 [ARG] B5:1395 [U] 2.74 B5:2053 [A] 28.1
BF:34 [LYS] B5:1393 [C] 4.98 16.9
BF:34 [LYS] B5:1394 [U] 4.13 16.9
BF:35 [LYS] B5:2046 [A] 4.36 30.7
BF:36 [PHE] B5:1215 [G] 3.9 5.3
BF:36 [PHE] B5:1216 [C] 3.5 5.3
BF:36 [PHE] B5:1217 [G] 3.47 B5:883 [C] 5.3
BF:37 [ALA] B5:1215 [G] 3.44 24.9
BF:37 [ALA] B5:1393 [C] 4.91 24.9
BF:37 [ALA] B5:1394 [U] 3.83 24.9
BF:40 [MET] B5:1215 [G] 4.57 50.3
BF:41 [LEU] B5:2042 [A] 4.87 40.5
BF:42 [ARG] B5:876 [C] 3.57 B5:1225 [G] 18.5
BF:42 [ARG] B5:877 [C] 3.31 B5:1223 [A] 18.5
BF:42 [ARG] B5:2041 [G] 4.64 18.5
BF:43 [LYS] B5:1124 [A] 4.94 13.6
BF:45 [ARG] B5:2040 [A] 4.97 23.9
BF:45 [ARG] B5:2041 [G] 3.34 base/AA stacks 23.9
BF:45 [ARG] B5:2042 [A] 3.1 base:SC 23.9
BF:46 [ARG] B5:877 [C] 2.85 B5:1223 [A] 66.1
BF:46 [ARG] B5:878 [G] 3.39 B5:1222 [C] 66.1
BF:46 [ARG] B5:1124 [A] 3.91 66.1
BF:47 [LYS] B5:1124 [A] 3.56 52.0
BF:47 [LYS] B5:1125 [C] 3.04 B5:988 [G] 52.0
BF:50 [TYR] B5:1124 [A] 3.13 base/AA stacks 55.0
BF:51 [GLU] B5:1124 [A] 2.7 sugar:SC 62.9
BF:51 [GLU] B5:1125 [C] 3.37 B5:988 [G] 62.9
BF:53 [ALA] B5:843 [A] 3.95 77.6
BF:56 [TYR] B5:843 [A] 4.44 61.3
BF:57 [HIS] B5:843 [A] 2.94 sugar:BB 70.2
BF:57 [HIS] B5:844 [A] 3.21 70.2
BF:58 [LYS] B5:1104 [G] 3.12 B5:999 [C] 55.6
BF:58 [LYS] B5:1105 [C] 3.05 55.6
BF:58 [LYS] B5:1106 [U] 2.4 55.6
BF:60 [TYR] B5:843 [A] 3.29 45.3
BF:61 [ARG] B5:843 [A] 3.89 60.4
BF:61 [ARG] B5:844 [A] 3.31 60.4
BF:62 [GLN] B5:1103 [G] 3.56 B5:1000 [C] 40.8
BF:62 [GLN] B5:1104 [G] 4.39 B5:999 [C] 40.8
BF:64 [TYR] B5:720 [G] 2.86 B5:840 [C] sugar:SC 56.4
BF:64 [TYR] B5:721 [C] 4.13 B5:839 [G] 56.4
BF:64 [TYR] B5:844 [A] 3.35 base/AA stacks 56.4
BF:65 [ARG] B5:720 [G] 3.14 B5:840 [C] 51.4
BF:65 [ARG] B5:721 [C] 3.2 B5:839 [G] 51.4
BF:65 [ARG] B5:1101 [C] 3.13 base:SC 51.4
BF:66 [THR] B5:1102 [G] 4.88 B5:1001 [C] 44.5
BF:68 [ILE] B5:720 [G] 4.12 B5:840 [C] 15.8
BF:68 [ILE] B5:721 [C] 3.58 B5:839 [G] 15.8
BF:68 [ILE] B5:722 [U] 4.12 B5:831 [A] 15.8
BF:69 [ARG] B5:1002 [A] 4.9 B5:1100 [U] 83.5
BF:69 [ARG] B5:1100 [U] 4.0 B5:1002 [A] 83.5
BF:69 [ARG] B5:1101 [C] 3.88 83.5
BF:69 [ARG] B5:1102 [G] 2.93 B5:1001 [C] 83.5
BF:70 [MET] B5:1003 [C] 3.4 B5:1099 [G] 33.3
BF:72 [ARG] B5:721 [C] 2.91 B5:839 [G] 72.1
BF:72 [ARG] B5:722 [U] 2.89 B5:831 [A] 72.1
BF:72 [ARG] B5:724 [G] 3.32 base/AA stacks 72.1
BF:72 [ARG] B5:1101 [C] 4.64 72.1
BF:73 [MET] B5:1003 [C] 3.13 B5:1099 [G] 9.6
BF:73 [MET] B5:1004 [G] 3.29 B5:1098 [C] 9.6
BF:73 [MET] B5:1099 [G] 3.85 B5:1003 [C] 9.6
BF:75 [ARG] B5:722 [U] 2.88 B5:831 [A] 27.2
BF:75 [ARG] B5:723 [G] 3.28 27.2
BF:75 [ARG] B5:724 [G] 2.56 sugar:SC 27.2
BF:76 [LYS] B5:1099 [G] 3.82 B5:1003 [C] 15.9
BF:77 [ALA] B5:1004 [G] 4.02 B5:1098 [C] 16.4
BF:77 [ALA] B5:1005 [G] 3.66 B5:1097 [C] 16.4
BF:79 [ASN] B5:1004 [G] 4.18 B5:1098 [C] 25.8
BF:79 [ASN] B5:1005 [G] 3.47 B5:1097 [C] 25.8
BF:94 [ILE] B5:1835 [A] 4.03 84.0
BF:95 [ARG] B5:1834 [G] 2.7 B5:1823 [C] 79.1
BF:95 [ARG] B5:1835 [A] 3.47 79.1
BF:96 [GLY] B5:1835 [A] 2.92 75.2
BF:96 [GLY] B5:1836 [A] 3.15 75.2
BF:97 [ILE] B5:1836 [A] 2.99 27.3
BF:98 [ASN] B5:1817 [G] 4.86 B5:1795 [C] 52.3
BF:98 [ASN] B5:1835 [A] 3.3 base/AA stacks 52.3
BF:98 [ASN] B5:1836 [A] 3.13 sugar:SC 52.3
BF:99 [GLY] B5:1816 [G] 3.23 B5:1796 [C] 46.2
BF:99 [GLY] B5:1817 [G] 3.69 B5:1795 [C] 46.2
BF:100 [VAL] B5:1816 [G] 3.34 B5:1796 [C] 55.1
BF:101 [SER] B5:1815 [U] 4.12 B5:1797 [A] 59.6
BF:101 [SER] B5:1816 [G] 4.44 B5:1796 [C] 59.6
BF:102 [PRO] B5:1663 [G] 3.22 65.0
BF:102 [PRO] B5:1815 [U] 3.14 B5:1797 [A] 65.0
BF:102 [PRO] B5:1816 [G] 3.51 B5:1796 [C] 65.0
BF:103 [LYS] B5:1663 [G] 4.14 50.7
BF:103 [LYS] B5:1664 [U] 3.85 B5:1777 [A] 50.7
BF:103 [LYS] B5:1665 [U] 3.44 B5:1776 [A] 50.7
BF:103 [LYS] B5:1735 [U] 4.94 B5:1672 [G] 50.7
BF:103 [LYS] B5:1736 [G] 2.6 B5:1671 [C] 50.7
BF:106 [LYS] B5:1662 [A] 3.2 B5:1778 [U] 67.8
BF:106 [LYS] B5:1663 [G] 2.99 67.8
BF:106 [LYS] B5:1664 [U] 3.56 B5:1777 [A] 67.8
BF:107 [VAL] B5:1664 [U] 3.34 B5:1777 [A] 83.6
BF:109 [GLN] B5:1779 [G] 3.77 B5:1661 [C] 37.3
BF:110 [LEU] B5:1662 [A] 3.92 B5:1778 [U] 51.9
BF:110 [LEU] B5:1664 [U] 3.43 B5:1777 [A] 51.9
BF:110 [LEU] B5:1778 [U] 2.57 B5:1662 [A] sugar:BB 51.9
BF:110 [LEU] B5:1779 [G] 3.31 B5:1661 [C] sugar:BB 51.9
BF:111 [LEU] B5:1778 [U] 4.52 B5:1662 [A] 83.2
BF:112 [ARG] B5:1779 [G] 3.54 B5:1661 [C] 88.8
BF:112 [ARG] B5:1780 [C] 3.68 B5:1660 [G] 88.8
BF:115 [GLN] B5:2010 [A] 4.91 B5:1844 [U] 64.0
BF:115 [GLN] B5:2011 [C] 2.87 B5:1843 [G] 64.0
BF:115 [GLN] B5:2012 [C] 3.41 B5:1842 [G] 64.0
BF:116 [ILE] B5:1835 [A] 3.76 57.9
BF:116 [ILE] B5:1836 [A] 3.71 57.9
BF:116 [ILE] B5:2010 [A] 3.41 B5:1844 [U] 57.9
BF:116 [ILE] B5:2011 [C] 3.7 B5:1843 [G] 57.9
BF:117 [PHE] B5:1845 [U] 4.14 B5:2008 [A] 81.3
BF:117 [PHE] B5:2011 [C] 3.57 B5:1843 [G] 81.3
BF:118 [ASN] B5:2012 [C] 4.54 B5:1842 [G] 66.5
BF:123 [LYS] B5:1777 [A] 3.14 B5:1664 [U] 62.2
BF:123 [LYS] B5:1778 [U] 3.19 B5:1662 [A] 62.2
BF:125 [ASN] B5:1777 [A] 3.93 B5:1664 [U] sugar:SC 84.2
BF:126 [LYS] B5:1665 [U] 4.18 B5:1776 [A] 37.5
BF:126 [LYS] B5:1666 [U] 3.75 B5:1741 [A] 37.5
BF:126 [LYS] B5:1667 [U] 2.94 B5:1740 [A] 37.5
BF:127 [ALA] B5:1665 [U] 2.66 B5:1776 [A] sugar:BB 63.8
BF:127 [ALA] B5:1666 [U] 3.61 B5:1741 [A] 63.8
BF:127 [ALA] B5:1776 [A] 4.89 B5:1665 [U] 63.8
BF:127 [ALA] B5:1777 [A] 4.1 B5:1664 [U] 63.8
BF:128 [SER] B5:1665 [U] 4.76 B5:1776 [A] 72.6
BF:128 [SER] B5:1777 [A] 4.83 B5:1664 [U] 72.6
BF:130 [ASN] B5:1665 [U] 3.49 B5:1776 [A] 60.2
BF:130 [ASN] B5:1666 [U] 2.7 B5:1741 [A] 60.2
BF:131 [MET] B5:1664 [U] 3.82 B5:1777 [A] 82.2
BF:131 [MET] B5:1665 [U] 3.76 B5:1776 [A] 82.2
BF:131 [MET] B5:1777 [A] 4.3 B5:1664 [U] 82.2
BF:131 [MET] B5:1778 [U] 4.73 B5:1662 [A] 82.2
BF:134 [ILE] B5:1664 [U] 3.4 B5:1777 [A] 9.1
BF:134 [ILE] B5:1665 [U] 3.56 B5:1776 [A] 9.1
BF:145 [ASN] B5:841 [C] 3.76 B5:719 [G] 75.2
BF:145 [ASN] B5:842 [G] 2.95 B5:718 [C] 75.2
BF:146 [LEU] B5:843 [A] 3.43 56.2
BF:147 [LYS] B5:842 [G] 3.55 B5:718 [C] 55.8
BF:147 [LYS] B5:843 [A] 3.84 55.8
BF:150 [ASN] B5:843 [A] 2.81 base:SC, base:SC 78.1
BF:155 [LYS] B5:711 [U] 3.05 B5:851 [G] 97.3
BF:156 [ARG] B5:711 [U] 3.96 B5:851 [G] 90.3
BF:156 [ARG] B5:2012 [C] 3.11 B5:1842 [G] sugar:SC, sugar:SC 90.3
BF:156 [ARG] B5:2013 [C] 4.24 B5:1841 [G] 90.3
BF:158 [TYR] B5:2013 [C] 4.49 B5:1841 [G] 31.9
BF:160 [LYS] B5:1780 [C] 3.36 B5:1660 [G] 53.4
BF:162 [ASN] B5:1652 [G] 3.73 sugar:SC 51.7
BF:162 [ASN] B5:2022 [C] 3.09 B5:2116 [G] sugar:SC 51.7
BF:163 [LYS] B5:1781 [G] 3.11 B5:1649 [C] 52.4
BF:163 [LYS] B5:2118 [G] 4.47 B5:2020 [C] 52.4
BF:164 [LYS] B5:2021 [G] 3.45 B5:2117 [C] 44.8
BF:164 [LYS] B5:2022 [C] 3.2 B5:2116 [G] base:SC 44.8
BF:164 [LYS] B5:2116 [G] 3.57 B5:2022 [C] 44.8
BF:164 [LYS] B5:2117 [C] 3.07 B5:2021 [G] base:SC 44.8
BF:164 [LYS] B5:2118 [G] 3.63 B5:2020 [C] 44.8
BF:165 [ARG] B5:2013 [C] 3.91 B5:1841 [G] 65.8
BF:165 [ARG] B5:2118 [G] 3.24 B5:2020 [C] sugar:BB 65.8
BF:165 [ARG] B5:2119 [A] 3.08 B5:2019 [U] 65.8
BF:166 [ILE] B5:2117 [C] 4.03 B5:2021 [G] 48.6
BF:166 [ILE] B5:2118 [G] 3.95 B5:2020 [C] 48.6
BF:170 [ASP] B5:876 [C] 4.56 B5:1225 [G] 70.2
BF:172 [THR] B5:2040 [A] 3.53 42.7
BF:172 [THR] B5:2041 [G] 2.6 42.7
BF:175 [ALA] B5:2041 [G] 3.5 86.2
BF:176 [ARG] B5:1653 [C] 2.4 sugar:SC 45.9
BF:176 [ARG] B5:1654 [A] 2.88 45.9
BF:176 [ARG] B5:1655 [A] 5.0 45.9
BF:176 [ARG] B5:2040 [A] 3.14 base/AA stacks 45.9
BF:176 [ARG] B5:2041 [G] 3.78 45.9
BF:177 [SER] B5:1654 [A] 4.32 16.1
BF:179 [GLY] B5:1655 [A] 4.35 78.5
BF:179 [GLY] B5:2041 [G] 3.37 78.5
BF:180 [LYS] B5:1655 [A] 3.25 49.9
BF:180 [LYS] B5:1656 [C] 4.03 49.9
BF:180 [LYS] B5:2041 [G] 3.69 49.9
BF:184 [ILE] B5:2041 [G] 3.54 74.5
BF:187 [GLU] B5:843 [A] 2.86 base:SC 90.9
BF:190 [ILE] B5:843 [A] 4.22 75.2
BF:201 [LYS] B5:1778 [U] 2.98 B5:1662 [A] 60.7
BF:201 [LYS] B5:1779 [G] 2.71 B5:1661 [C] 60.7
BF:204 [ASN] B5:1779 [G] 4.4 B5:1661 [C] 57.5
BF:205 [ASN] B5:1779 [G] 3.22 B5:1661 [C] 52.8
BF:205 [ASN] B5:1780 [C] 2.89 B5:1660 [G] 52.8
BF:208 [TRP] B5:2118 [G] 4.77 B5:2020 [C] 0.1
BF:208 [TRP] B5:2119 [A] 4.27 B5:2019 [U] 0.1
BF:211 [LYS] B5:2012 [C] 3.32 B5:1842 [G] 72.6
BF:211 [LYS] B5:2013 [C] 4.61 B5:1841 [G] 72.6
BF:211 [LYS] B5:2120 [C] 4.96 B5:2018 [G] 72.6
BF:212 [LEU] B5:2011 [C] 2.63 B5:1843 [G] sugar:BB 95.9
BF:212 [LEU] B5:2012 [C] 3.25 B5:1842 [G] 95.9
BF:213 [SER] B5:1843 [G] 3.09 B5:2011 [C] base:SC 62.7
BF:213 [SER] B5:1844 [U] 4.95 B5:2010 [A] 62.7
BF:213 [SER] B5:2011 [C] 3.46 B5:1843 [G] 62.7
BF:213 [SER] B5:2012 [C] 3.2 B5:1842 [G] 62.7
BF:214 [SER] B5:1843 [G] 4.59 B5:2011 [C] 54.5
BF:214 [SER] B5:1844 [U] 3.22 B5:2010 [A] base:SC 54.5
BF:214 [SER] B5:1845 [U] 3.79 B5:2008 [A] 54.5
BF:214 [SER] B5:2010 [A] 3.8 B5:1844 [U] 54.5
BF:214 [SER] B5:2011 [C] 2.99 B5:1843 [G] 54.5
BF:214 [SER] B5:2012 [C] 4.76 B5:1842 [G] 54.5
BF:215 [PRO] B5:1844 [U] 3.62 B5:2010 [A] 86.9
BF:215 [PRO] B5:1845 [U] 3.11 B5:2008 [A] 86.9
BF:216 [ARG] B5:712 [C] 2.89 B5:850 [G] 42.8
BF:216 [ARG] B5:713 [C] 3.55 B5:849 [G] 42.8
BF:216 [ARG] B5:1844 [U] 3.56 B5:2010 [A] 42.8
BF:216 [ARG] B5:1845 [U] 3.7 B5:2008 [A] 42.8
BF:217 [GLY] B5:1844 [U] 3.85 B5:2010 [A] 51.5
BF:217 [GLY] B5:1845 [U] 2.59 B5:2008 [A] 51.5
BF:218 [GLY] B5:1845 [U] 3.39 B5:2008 [A] 79.4
BF:218 [GLY] B5:1846 [A] 3.44 79.4
BF:219 [MET] B5:1845 [U] 3.67 B5:2008 [A] 40.5
BF:219 [MET] B5:1846 [A] 2.61 40.5
BF:220 [LYS] B5:1846 [A] 4.91 46.3
BF:220 [LYS] B5:1847 [A] 4.55 B5:2007 [C] 46.3
BF:220 [LYS] B5:2002 [G] 4.42 B5:1859 [C] 46.3
BF:221 [LYS] B5:1847 [A] 3.37 B5:2007 [C] 52.6
BF:221 [LYS] B5:1848 [G] 3.96 B5:2006 [C] 52.6
BF:222 [LYS] B5:1834 [G] 3.54 B5:1823 [C] 65.6
BF:222 [LYS] B5:1835 [A] 2.57 65.6
BF:222 [LYS] B5:1846 [A] 3.21 65.6
BF:222 [LYS] B5:1847 [A] 2.95 B5:2007 [C] 65.6
BF:223 [THR] B5:1833 [C] 4.87 B5:1824 [G] 37.3
BF:223 [THR] B5:1834 [G] 3.84 B5:1823 [C] 37.3
BF:223 [THR] B5:1847 [A] 4.56 B5:2007 [C] 37.3
BF:237 [ASP] B5:840 [C] 4.3 B5:720 [G] 46.1
BF:237 [ASP] B5:841 [C] 4.46 B5:719 [G] 46.1
BF:238 [GLN] B5:840 [C] 3.97 B5:720 [G] 13.1
BF:238 [GLN] B5:841 [C] 3.19 B5:719 [G] 13.1
BF:241 [ARG] B5:840 [C] 3.7 B5:720 [G] 41.3
BF:241 [ARG] B5:841 [C] 2.9 B5:719 [G] 41.3
BF:244 [ARG] B5:842 [G] 2.69 B5:718 [C] 6.0
BF:247 [ASN] B5:711 [U] 4.79 B5:851 [G] 69.7

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group124 7O7Y_BF_B5 BF: Ribosomal protein ul30, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) Ribosomal protein L30p/L7e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 7O7Y_BF_B5 0.64 0.94 1.51 0.22 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7O7Y_BF_B5 0.65 0.94 1.79 0.21 Ribosomal protein L30p/L7e compare
6AZ3_c_1 7O7Y_BF_B5 0.65 0.92 1.81 0.33 Ribosomal protein L30p/L7e Eukaryotic large subunit ribosomal RNA compare
4Y4O_13_1A 7O7Y_BF_B5 0.58 0.89 2.87 0.04 Ribosomal protein L30p/L7e compare
6S0Z_X_A 7O7Y_BF_B5 0.72 0.89 2.16 0.17 Ribosomal protein L30p/L7e compare