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All interfaces > All interologs > Interface groups > group124 > 7OF0_Z_A

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7OF0_Z
7OF0_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Z:35 [LYS] A:2073 [A] 4.55 70.43
Z:35 [LYS] A:2103 [A] 2.92 A:2118 [U] sugar:BB 70.43
Z:35 [LYS] A:2104 [A] 2.86 A:2117 [U] sugar:BB 70.43
Z:35 [LYS] A:2118 [U] 2.94 A:2103 [A] base:SC 70.43
Z:35 [LYS] A:2119 [U] 3.65 A:2102 [A] 70.43
Z:36 [PHE] A:2102 [A] 4.52 A:2119 [U] 50.86
Z:36 [PHE] A:2103 [A] 4.53 A:2118 [U] 50.86
Z:36 [PHE] A:2119 [U] 2.26 A:2102 [A] base:BB, sugar:BB 50.86
Z:36 [PHE] A:2120 [G] 3.31 A:2101 [C] 50.86
Z:37 [THR] A:2073 [A] 3.32 sugar:SC 61.57
Z:37 [THR] A:2074 [A] 3.17 61.57
Z:37 [THR] A:2119 [U] 4.33 A:2102 [A] 61.57
Z:38 [ARG] A:2059 [C] 3.79 57.77
Z:38 [ARG] A:2073 [A] 4.48 57.77
Z:38 [ARG] A:2074 [A] 3.05 57.77
Z:38 [ARG] A:2075 [U] 3.01 A:2064 [A] 57.77
Z:38 [ARG] A:2076 [C] 4.84 A:2063 [G] 57.77
Z:39 [SER] A:2074 [A] 3.34 80.14
Z:40 [ARG] A:2074 [A] 2.68 78.89
Z:71 [ARG] A:2139 [U] 4.97 A:2126 [U] 87.09
Z:71 [ARG] A:2140 [G] 2.62 87.09
Z:72 [ILE] A:2139 [U] 3.46 A:2126 [U] 70.22
Z:73 [LYS] A:2137 [C] 4.64 A:2128 [G] 67.89
Z:73 [LYS] A:2138 [U] 2.3 A:2127 [A] 67.89
Z:73 [LYS] A:2139 [U] 3.21 A:2126 [U] 67.89
Z:73 [LYS] A:2140 [G] 4.29 67.89
Z:74 [SER] A:2138 [U] 4.95 A:2127 [A] 47.4
Z:74 [SER] A:2139 [U] 2.78 A:2126 [U] 47.4
Z:74 [SER] A:2140 [G] 3.35 47.4
Z:75 [THR] A:2122 [A] 4.87 A:2099 [U] 27.55
Z:75 [THR] A:2140 [G] 4.93 27.55
Z:76 [ARG] A:2121 [G] 4.83 A:2100 [C] 27.45
Z:76 [ARG] A:2122 [A] 3.7 A:2099 [U] 27.45
Z:76 [ARG] A:2123 [C] 3.0 A:2098 [G] 27.45
Z:76 [ARG] A:2126 [U] 3.48 A:2139 [U] base:SC 27.45
Z:76 [ARG] A:2139 [U] 3.59 A:2126 [U] 27.45
Z:76 [ARG] A:2140 [G] 3.47 base/AA stacks 27.45
Z:77 [ARG] A:2121 [G] 3.35 A:2100 [C] 59.91
Z:77 [ARG] A:2122 [A] 3.27 A:2099 [U] 59.91
Z:77 [ARG] A:2127 [A] 4.64 A:2138 [U] 59.91
Z:77 [ARG] A:2136 [C] 2.79 A:2129 [G] 59.91
Z:77 [ARG] A:2137 [C] 3.0 A:2128 [G] 59.91
Z:77 [ARG] A:2138 [U] 2.74 A:2127 [A] base:SC 59.91
Z:77 [ARG] A:2139 [U] 2.85 A:2126 [U] base:SC, base:SC 59.91
Z:78 [ARG] A:2121 [G] 3.29 A:2100 [C] 62.01
Z:78 [ARG] A:2122 [A] 4.73 A:2099 [U] 62.01
Z:79 [PRO] A:2120 [G] 3.83 A:2101 [C] 76.69
Z:79 [PRO] A:2121 [G] 3.68 A:2100 [C] 76.69
Z:80 [TYR] A:2120 [G] 3.29 A:2101 [C] 40.72
Z:80 [TYR] A:2121 [G] 2.89 A:2100 [C] 40.72
Z:81 [TRP] A:2120 [G] 3.66 A:2101 [C] 38.87
Z:83 [LYS] A:2121 [G] 3.97 A:2100 [C] 89.37
Z:83 [LYS] A:2122 [A] 3.34 A:2099 [U] 89.37
Z:85 [ILE] A:2058 [C] 3.42 A:2081 [U] 63.14
Z:88 [MET] A:2057 [C] 3.72 A:2082 [G] 14.83
Z:88 [MET] A:2058 [C] 3.58 A:2081 [U] 14.83
Z:88 [MET] A:2082 [G] 3.0 A:2057 [C] 14.83
Z:88 [MET] A:2083 [U] 3.44 A:2056 [G] 14.83
Z:89 [LEU] A:2082 [G] 3.86 A:2057 [C] 73.31
Z:92 [GLU] A:2140 [G] 4.93 6.35
Z:93 [LYS] A:2141 [U] 4.94 42.72
Z:93 [LYS] A:2253 [U] 3.15 A:2148 [A] 42.72
Z:93 [LYS] A:2254 [C] 3.26 A:2147 [G] 42.72
Z:94 [ALA] A:2140 [G] 3.65 0.0
Z:94 [ALA] A:2252 [C] 3.94 A:2149 [G] 0.0
Z:94 [ALA] A:2253 [U] 3.48 A:2148 [A] 0.0
Z:95 [HIS] A:2252 [C] 4.28 A:2149 [G] 32.28
Z:95 [HIS] A:2253 [U] 3.67 A:2148 [A] 32.28
Z:96 [THR] A:2253 [U] 4.42 A:2148 [A] 2.16
Z:96 [THR] A:2254 [C] 4.59 A:2147 [G] 2.16
Z:100 [HIS] A:2082 [G] 3.63 A:2057 [C] 68.49
Z:100 [HIS] A:2083 [U] 4.23 A:2056 [G] 68.49
Z:101 [LYS] A:2081 [U] 4.26 A:2058 [C] 86.77
Z:101 [LYS] A:2082 [G] 2.79 A:2057 [C] 86.77
Z:103 [ILE] A:2081 [U] 4.12 A:2058 [C] 83.56
Z:104 [PRO] A:2060 [A] 4.75 A:2078 [C] 92.95
Z:105 [SER] A:2060 [A] 4.03 A:2078 [C] 64.62
Z:105 [SER] A:2080 [U] 3.72 64.62
Z:105 [SER] A:2081 [U] 2.91 A:2058 [C] sugar:SC 64.62
Z:106 [VAL] A:2081 [U] 3.6 A:2058 [C] 62.56
Z:106 [VAL] A:2082 [G] 3.78 A:2057 [C] 62.56
Z:108 [ALA] A:2060 [A] 3.32 A:2078 [C] 33.82
Z:109 [LYS] A:2058 [C] 2.92 A:2081 [U] base:SC 39.02
Z:109 [LYS] A:2081 [U] 3.0 A:2058 [C] base:SC 39.02
Z:109 [LYS] A:2082 [G] 3.44 A:2057 [C] 39.02

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group124 7OF0_Z_A Z: 39s ribosomal protein l30, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) Q8TCC3 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
7OF0_Z_A 7RYG_Y_A 0.37 0.89 3.29 0.15 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7OF0_Z_A 0.62 0.93 2.4 0.18 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
4Y4O_13_1A 7OF0_Z_A 0.49 0.93 1.37 0.18 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare