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All interfaces > All interologs > Interface groups > group124 > 7RYG_Y_A

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7RYG_Y
7RYG_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Y:10 [LYS] A:985 [A] 3.94 68.93
Y:11 [SER] A:985 [A] 3.08 98.65
Y:11 [SER] A:986 [G] 2.99 A:972 [A] 98.65
Y:12 [SER] A:986 [G] 4.97 A:972 [A] 19.67
Y:13 [SER] A:967 [U] 3.66 A:944 [A] 66.25
Y:13 [SER] A:985 [A] 4.19 66.25
Y:13 [SER] A:986 [G] 3.82 A:972 [A] 66.25
Y:14 [HIS] A:966 [G] 3.64 A:945 [C] 79.77
Y:14 [HIS] A:967 [U] 3.92 A:944 [A] 79.77
Y:14 [HIS] A:984 [C] 3.07 A:973 [G] 79.77
Y:14 [HIS] A:985 [A] 3.58 79.77
Y:15 [ARG] A:966 [G] 4.18 A:945 [C] 25.82
Y:15 [ARG] A:984 [C] 4.62 A:973 [G] 25.82
Y:15 [ARG] A:985 [A] 4.41 25.82
Y:16 [LEU] A:965 [A] 3.95 A:946 [U] 35.23
Y:17 [LYS] A:847 [A] 4.94 A:927 [U] 6.39
Y:17 [LYS] A:966 [G] 4.94 A:945 [C] 6.39
Y:18 [ASN] A:848 [C] 4.11 A:926 [G] 10.28
Y:18 [ASN] A:849 [C] 3.58 A:924 [G] 10.28
Y:21 [LEU] A:847 [A] 3.27 A:927 [U] 8.07
Y:21 [LEU] A:848 [C] 3.62 A:926 [G] 8.07
Y:22 [CYS] A:848 [C] 3.31 A:926 [G] 70.13
Y:22 [CYS] A:849 [C] 3.95 A:924 [G] 70.13
Y:24 [GLN] A:927 [U] 2.95 A:847 [A] sugar:BB 15.08
Y:24 [GLN] A:928 [A] 3.54 A:846 [U] 15.08
Y:25 [GLY] A:848 [C] 4.33 A:926 [G] 76.19
Y:25 [GLY] A:926 [G] 3.43 A:848 [C] base:BB 76.19
Y:25 [GLY] A:927 [U] 3.31 A:847 [A] sugar:BB 76.19
Y:26 [LEU] A:926 [G] 4.94 A:848 [C] 95.66
Y:26 [LEU] A:927 [U] 4.81 A:847 [A] 95.66
Y:27 [GLY] A:927 [U] 3.99 A:847 [A] 98.6
Y:29 [ARG] A:1178 [C] 2.42 A:1164 [G] sugar:SC 57.2
Y:29 [ARG] A:1179 [G] 2.68 A:1163 [U] 57.2
Y:30 [ARG] A:1156 [C] 4.42 A:994 [G] 66.94
Y:30 [ARG] A:1157 [U] 4.27 A:993 [A] 66.94
Y:30 [ARG] A:1178 [C] 4.39 A:1164 [G] 66.94
Y:30 [ARG] A:1179 [G] 3.62 A:1163 [U] 66.94
Y:31 [ILE] A:985 [A] 4.0 60.66
Y:31 [ILE] A:986 [G] 3.89 A:972 [A] 60.66
Y:31 [ILE] A:1155 [G] 3.94 A:995 [C] 60.66
Y:31 [ILE] A:1156 [C] 3.8 A:994 [G] 60.66
Y:38 [GLN] A:925 [A] 3.28 sugar:SC 35.39
Y:38 [GLN] A:926 [G] 4.18 A:848 [C] 35.39
Y:40 [THR] A:925 [A] 4.64 79.13
Y:41 [PRO] A:849 [C] 3.98 A:924 [G] sugar:BB 60.27
Y:41 [PRO] A:850 [A] 3.85 A:923 [U] 60.27
Y:42 [SER] A:849 [C] 2.49 A:924 [G] base:SC, sugar:BB 48.05
Y:42 [SER] A:850 [A] 3.74 A:923 [U] 48.05
Y:42 [SER] A:924 [G] 2.8 A:849 [C] base:SC 48.05
Y:42 [SER] A:925 [A] 3.44 48.05
Y:43 [ASN] A:849 [C] 4.63 A:924 [G] 58.61
Y:43 [ASN] A:925 [A] 3.44 58.61
Y:43 [ASN] A:926 [G] 4.64 A:848 [C] 58.61
Y:45 [GLY] A:849 [C] 3.51 A:924 [G] 99.0
Y:45 [GLY] A:850 [A] 4.12 A:923 [U] 99.0
Y:46 [MET] A:848 [C] 3.62 A:926 [G] 83.06
Y:46 [MET] A:849 [C] 3.38 A:924 [G] 83.06
Y:46 [MET] A:925 [A] 4.87 83.06
Y:46 [MET] A:926 [G] 3.51 A:848 [C] 83.06
Y:49 [LYS] A:849 [C] 3.86 A:924 [G] 69.85

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group124 7RYG_Y_A Y: 50s ribosomal protein l30, Acinetobacter baumannii ab0057 (natural) A: 23s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_0 7RYG_Y_A 0.79 0.92 2.65 0.15 Ribosomal protein L30p/L7e compare
1VQ8_W_0 7RYG_Y_A 0.78 0.92 2.64 0.15 Ribosomal protein L30p/L7e compare
7OF0_Z_A 7RYG_Y_A 0.37 0.89 3.29 0.15 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6AZ3_c_1 7RYG_Y_A 0.57 0.63 2.5 0.19 Ribosomal protein L30p/L7e compare
4Y4O_13_1A 7RYG_Y_A 0.66 0.96 3.31 0.31 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare
6S0Z_X_A 7RYG_Y_A 0.68 0.98 2.14 0.27 Ribosomal protein L30p/L7e Bacterial large subunit ribosomal RNA compare