Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
1VQ8_C
|
1VQ8_0
|
3CC2_C
|
3CC2_0
|
Conserved?
|
---|---|---|---|---|
C:76 [ARG] | 0:476 [A] | C:76 [ARG] | 0:476 [A] | ✔ |
C:76 [ARG] | 0:1362 [U] | C:76 [ARG] | 0:1362 [U] | ✔ |
C:76 [ARG] | 0:1363 [G] | C:76 [ARG] | 0:1363 [G] | ✔ |
C:88 [SER] | 0:456 [G] | C:88 [SER] | 0:456 [G] | ✔ |
C:88 [SER] | 0:1352 [A] | C:88 [SER] | 0:1352 [A] | ✔ |
C:180 [SER] | 0:29 [C] | C:180 [SER] | 0:29 [C] | ✔ |
C:180 [SER] | 0:30 [U] | C:180 [SER] | 0:30 [U] | ✔ |
C:85 [LYS] | 0:454 [U] | C:85 [LYS] | 0:454 [U] | ✔ |
C:85 [LYS] | 0:455 [A] | C:85 [LYS] | 0:455 [A] | ✔ |
C:85 [LYS] | 0:458 [G] | C:85 [LYS] | 0:458 [G] | ✔ |
C:85 [LYS] | 0:459 [A] | C:85 [LYS] | 0:459 [A] | ✔ |
C:85 [LYS] | 0:476 [A] | C:85 [LYS] | 0:476 [A] | ✔ |
C:85 [LYS] | 0:477 [A] | C:85 [LYS] | 0:477 [A] | ✔ |
C:90 [HIS] | 0:643 [A] | C:90 [HIS] | 0:643 [A] | ✔ |
C:90 [HIS] | 0:644 [G] | C:90 [HIS] | 0:644 [G] | ✔ |
C:90 [HIS] | 0:645 [U] | C:90 [HIS] | 0:645 [U] | ✔ |
C:90 [HIS] | 0:762 [C] | C:90 [HIS] | 0:762 [C] | ✔ |
C:90 [HIS] | 0:763 [C] | C:90 [HIS] | 0:763 [C] | ✔ |
C:90 [HIS] | 0:1352 [A] | C:90 [HIS] | 0:1352 [A] | ✔ |
C:45 [ASP] | 0:35 [U] | C:45 [ASP] | 0:35 [U] | ✔ |
C:45 [ASP] | 0:36 [C] | C:45 [ASP] | 0:36 [C] | ✔ |
C:183 [GLY] | 0:332 [G] | C:183 [GLY] | 0:332 [G] | ✔ |
C:84 [VAL] | 0:454 [U] | C:84 [VAL] | 0:454 [U] | ✔ |
C:84 [VAL] | 0:455 [A] | C:84 [VAL] | 0:455 [A] | ✔ |
C:84 [VAL] | 0:640 [G] | C:84 [VAL] | 0:640 [G] | ✔ |
C:84 [VAL] | 0:1361 [C] | C:84 [VAL] | 0:1361 [C] | ✔ |
C:84 [VAL] | 0:1362 [U] | C:84 [VAL] | 0:1362 [U] | ✔ |
C:37 [ALA] | 0:675 [U] | C:37 [ALA] | 0:675 [U] | ✔ |
C:37 [ALA] | 0:676 [C] | C:37 [ALA] | 0:676 [C] | ✔ |
C:170 [ASP] | 0:330 [C] | C:170 [ASP] | 0:330 [C] | ✔ |
C:170 [ASP] | 0:340 [A] | C:170 [ASP] | 0:340 [A] | ✔ |
C:209 [GLY] | 0:330 [C] | C:209 [GLY] | 0:330 [C] | ✔ |
C:53 [GLY] | 0:457 [U] | C:53 [GLY] | 0:457 [U] | ✔ |
C:53 [GLY] | 0:458 [G] | C:53 [GLY] | 0:458 [G] | ✔ |
C:246 [ARG] | 0:677 [C] | C:246 [ARG] | 0:677 [C] | ✔ |
C:246 [ARG] | 0:678 [G] | C:246 [ARG] | 0:678 [G] | ✔ |
C:150 [THR] | 0:327 [A] | C:150 [THR] | 0:327 [A] | ✔ |
C:150 [THR] | 0:328 [U] | C:150 [THR] | 0:328 [U] | ✔ |
C:150 [THR] | 0:329 [A] | C:150 [THR] | 0:329 [A] | ✔ |
C:87 [ARG] | 0:763 [C] | C:87 [ARG] | 0:763 [C] | ✔ |
C:87 [ARG] | 0:764 [C] | C:87 [ARG] | 0:764 [C] | ✔ |
C:87 [ARG] | 0:894 [A] | C:87 [ARG] | 0:894 [A] | ✔ |
C:154 [VAL] | 0:327 [A] | C:154 [VAL] | 0:327 [A] | ✔ |
C:173 [LYS] | 0:1309 [U] | C:173 [LYS] | 0:1309 [U] | ✔ |
C:173 [LYS] | 0:1310 [U] | C:173 [LYS] | 0:1310 [U] | ✔ |
C:173 [LYS] | 0:1311 [G] | C:173 [LYS] | 0:1311 [G] | ✔ |
C:173 [LYS] | 0:1343 [C] | C:173 [LYS] | 0:1343 [C] | ✔ |
C:173 [LYS] | 0:1344 [G] | C:173 [LYS] | 0:1344 [G] | ✔ |
C:173 [LYS] | 0:1345 [A] | C:173 [LYS] | 0:1345 [A] | ✔ |
C:94 [THR] | 0:35 [U] | C:94 [THR] | 0:35 [U] | ✔ |
C:94 [THR] | 0:36 [C] | C:94 [THR] | 0:36 [C] | ✔ |
C:75 [GLY] | 0:1362 [U] | C:75 [GLY] | 0:1362 [U] | ✔ |
C:179 [GLY] | 0:1305 [C] | C:179 [GLY] | 0:1305 [C] | ✔ |
C:179 [GLY] | 0:1306 [U] | C:179 [GLY] | 0:1306 [U] | ✔ |
C:219 [ASN] | 0:672 [G] | C:219 [ASN] | 0:672 [G] | ✔ |
C:219 [ASN] | 0:676 [C] | C:219 [ASN] | 0:676 [C] | ✔ |
C:219 [ASN] | 0:677 [C] | C:219 [ASN] | 0:677 [C] | ✔ |
C:184 [ARG] | 0:448 [G] | C:184 [ARG] | 0:448 [G] | ✔ |
C:184 [ARG] | 0:449 [A] | C:184 [ARG] | 0:449 [A] | ✔ |
C:184 [ARG] | 0:450 [C] | C:184 [ARG] | 0:450 [C] | ✔ |
C:184 [ARG] | 0:1305 [C] | C:184 [ARG] | 0:1305 [C] | ✔ |
C:184 [ARG] | 0:1306 [U] | C:184 [ARG] | 0:1306 [U] | ✔ |
C:189 [PRO] | 0:1309 [U] | C:189 [PRO] | 0:1309 [U] | ✔ |
C:189 [PRO] | 0:1310 [U] | C:189 [PRO] | 0:1310 [U] | ✔ |
C:36 [ARG] | 0:1348 [A] | C:36 [ARG] | 0:1348 [A] | ✔ |
C:36 [ARG] | 0:1349 [G] | C:36 [ARG] | 0:1349 [G] | ✔ |
C:108 [GLN] | 0:678 [G] | C:108 [GLN] | 0:678 [G] | ✔ |
C:108 [GLN] | 0:679 [G] | C:108 [GLN] | 0:679 [G] | ✔ |
C:38 [ALA] | 0:675 [U] | C:38 [ALA] | 0:675 [U] | ✔ |
C:38 [ALA] | 0:676 [C] | C:38 [ALA] | 0:676 [C] | ✔ |
C:202 [THR] | 0:328 [U] | C:202 [THR] | 0:328 [U] | ✔ |
C:202 [THR] | 0:329 [A] | C:202 [THR] | 0:329 [A] | ✔ |
C:73 [LEU] | 0:474 [C] | C:73 [GLN] | 0:474 [C] | ✔ |
C:73 [LEU] | 0:475 [G] | C:73 [GLN] | 0:475 [G] | ✔ |
C:73 [LEU] | 0:890 [C] | C:73 [GLN] | 0:890 [C] | ✔ |
C:43 [LYS] | 0:449 [A] | C:43 [LYS] | 0:449 [A] | ✔ |
C:43 [LYS] | 0:1306 [U] | C:43 [LYS] | 0:1306 [U] | ✔ |
C:93 [LYS] | 0:645 [U] | C:93 [LYS] | 0:645 [U] | ✔ |
C:93 [LYS] | 0:646 [G] | C:93 [LYS] | 0:646 [G] | ✔ |
C:93 [LYS] | 0:760 [G] | C:93 [LYS] | 0:760 [G] | ✔ |
C:93 [LYS] | 0:761 [A] | C:93 [LYS] | 0:761 [A] | ✔ |
C:151 [GLN] | 0:326 [G] | C:151 [GLN] | 0:326 [G] | ✔ |
C:151 [GLN] | 0:327 [A] | C:151 [GLN] | 0:327 [A] | ✔ |
C:151 [GLN] | 0:328 [U] | C:151 [GLN] | 0:328 [U] | ✔ |
C:149 [LYS] | 0:327 [A] | C:149 [LYS] | 0:327 [A] | ✔ |
C:149 [LYS] | 0:328 [U] | C:149 [LYS] | 0:328 [U] | ✔ |
C:168 [ARG] | 0:1309 [U] | C:168 [ARG] | 0:1309 [U] | ✔ |
C:168 [ARG] | 0:1310 [U] | C:168 [ARG] | 0:1310 [U] | ✔ |
C:60 [SER] | 0:765 [G] | C:60 [SER] | 0:765 [G] | ✔ |
C:60 [SER] | 0:766 [A] | C:60 [SER] | 0:766 [A] | ✔ |
C:60 [SER] | 0:767 [A] | C:60 [SER] | 0:767 [A] | ✔ |
C:49 [ASP] | 0:34 [C] | C:49 [ASP] | 0:34 [C] | ✔ |
C:49 [ASP] | 0:35 [U] | C:49 [ASP] | 0:35 [U] | ✔ |
C:49 [ASP] | 0:457 [U] | C:49 [ASP] | 0:457 [U] | ✔ |
C:172 [THR] | 0:339 [A] | C:172 [THR] | 0:339 [A] | ✔ |
C:221 [GLU] | 0:675 [U] | C:221 [GLU] | 0:675 [U] | ✔ |
C:55 [ARG] | 0:457 [U] | C:55 [ARG] | 0:457 [U] | ✔ |
C:55 [ARG] | 0:458 [G] | C:55 [ARG] | 0:458 [G] | ✔ |
C:55 [ARG] | 0:475 [G] | C:55 [ARG] | 0:475 [G] | ✔ |
C:186 [TYR] | 0:332 [G] | C:186 [TYR] | 0:332 [G] | ✔ |
C:186 [TYR] | 0:333 [G] | C:186 [TYR] | 0:333 [G] | ✔ |
C:186 [TYR] | 0:338 [C] | C:186 [TYR] | 0:338 [C] | ✔ |
C:186 [TYR] | 0:339 [A] | C:186 [TYR] | 0:339 [A] | ✔ |
C:69 [HIS] | 0:764 [C] | C:69 [HIS] | 0:764 [C] | ✔ |
C:69 [HIS] | 0:765 [G] | C:69 [HIS] | 0:765 [G] | ✔ |
C:69 [HIS] | 0:766 [A] | C:69 [HIS] | 0:766 [A] | ✔ |
C:69 [HIS] | 0:1359 [U] | C:69 [HIS] | 0:1359 [U] | ✔ |
C:69 [HIS] | 0:2101 [A] | C:69 [HIS] | 0:2101 [A] | ✔ |
C:69 [HIS] | 0:2479 [A] | C:69 [HIS] | 0:2479 [A] | ✔ |
C:218 [VAL] | 0:672 [G] | C:218 [VAL] | 0:672 [G] | ✔ |
C:218 [VAL] | 0:677 [C] | C:218 [VAL] | 0:677 [C] | ✔ |
C:72 [LYS] | 0:1361 [C] | C:72 [LYS] | 0:1361 [C] | ✔ |
C:72 [LYS] | 0:1362 [U] | C:72 [LYS] | 0:1362 [U] | ✔ |
C:82 [GLN] | 0:641 [G] | C:82 [GLN] | 0:641 [G] | ✔ |
C:82 [GLN] | 0:642 [G] | C:82 [GLN] | 0:642 [G] | ✔ |
C:82 [GLN] | 0:763 [C] | C:82 [GLN] | 0:763 [C] | ✔ |
C:82 [GLN] | 0:764 [C] | C:82 [GLN] | 0:764 [C] | ✔ |
C:82 [GLN] | 0:1358 [A] | C:82 [GLN] | 0:1358 [A] | ✔ |
C:82 [GLN] | 0:1360 [C] | C:82 [GLN] | 0:1360 [C] | ✔ |
C:82 [GLN] | 0:1361 [C] | C:82 [GLN] | 0:1361 [C] | ✔ |
C:74 [ASP] | 0:467 [G] | C:74 [ASP] | 0:467 [G] | ✔ |
C:74 [ASP] | 0:474 [C] | C:74 [ASP] | 0:474 [C] | ✔ |
C:74 [ASP] | 0:475 [G] | C:74 [ASP] | 0:475 [G] | ✔ |
C:178 [GLN] | 0:29 [C] | C:178 [GLN] | 0:29 [C] | ✔ |
C:178 [GLN] | 0:30 [U] | C:178 [GLN] | 0:30 [U] | ✔ |
C:178 [GLN] | 0:452 [G] | C:178 [GLN] | 0:452 [G] | ✔ |
C:178 [GLN] | 0:1305 [C] | C:178 [GLN] | 0:1305 [C] | ✔ |
C:188 [ARG] | 0:330 [C] | C:188 [ARG] | 0:330 [C] | ✔ |
C:188 [ARG] | 0:331 [A] | C:188 [ARG] | 0:331 [A] | ✔ |
C:188 [ARG] | 0:1308 [A] | C:188 [ARG] | 0:1308 [A] | ✔ |
C:188 [ARG] | 0:1309 [U] | C:188 [ARG] | 0:1309 [U] | ✔ |
C:106 [GLU] | 0:656 [G] | C:106 [GLU] | 0:656 [G] | ✔ |
C:106 [GLU] | 0:657 [G] | C:106 [GLU] | 0:657 [G] | ✔ |
C:97 [ASP] | 0:646 [G] | C:97 [ASP] | 0:646 [G] | ✔ |
C:97 [ASP] | 0:647 [U] | C:97 [ASP] | 0:647 [U] | ✔ |
C:200 [PRO] | 0:672 [G] | C:200 [PRO] | 0:672 [G] | ✔ |
C:57 [PRO] | 0:474 [C] | C:57 [PRO] | 0:474 [C] | ✔ |
C:57 [PRO] | 0:475 [G] | C:57 [PRO] | 0:475 [G] | ✔ |
C:57 [PRO] | 0:890 [C] | C:57 [PRO] | 0:890 [C] | ✔ |
C:57 [PRO] | 0:891 [G] | C:57 [PRO] | 0:891 [G] | ✔ |
C:228 [ALA] | 0:1308 [A] | C:228 [ALA] | 0:1308 [A] | ✔ |
C:127 [ARG] | 0:1308 [A] | C:127 [ARG] | 0:1308 [A] | ✔ |
C:127 [ARG] | 0:1309 [U] | C:127 [ARG] | 0:1309 [U] | ✔ |
C:127 [ARG] | 0:1310 [U] | C:127 [ARG] | 0:1310 [U] | ✔ |
C:29 [ASP] | 0:656 [G] | C:29 [ASP] | 0:656 [G] | ✔ |
C:70 [VAL] | 0:764 [C] | C:70 [VAL] | 0:764 [C] | ✔ |
C:70 [VAL] | 0:1360 [C] | C:70 [VAL] | 0:1360 [C] | ✔ |
C:70 [VAL] | 0:1361 [C] | C:70 [VAL] | 0:1361 [C] | ✔ |
C:40 [ALA] | 0:449 [A] | C:40 [ALA] | 0:449 [A] | ✔ |
C:105 [LYS] | 0:657 [G] | C:105 [LYS] | 0:657 [G] | ✔ |
C:105 [LYS] | 0:658 [C] | C:105 [LYS] | 0:658 [C] | ✔ |
C:105 [LYS] | 0:662 [U] | C:105 [LYS] | 0:662 [U] | ✔ |
C:105 [LYS] | 0:663 [C] | C:105 [LYS] | 0:663 [C] | ✔ |
C:33 [LYS] | 0:656 [G] | C:33 [LYS] | 0:656 [G] | ✔ |
C:33 [LYS] | 0:750 [A] | C:33 [LYS] | 0:750 [A] | ✔ |
C:33 [LYS] | 0:751 [U] | C:33 [LYS] | 0:751 [U] | ✔ |
C:206 [ASN] | 0:326 [G] | C:206 [ASN] | 0:326 [G] | ✔ |
C:206 [ASN] | 0:327 [A] | C:206 [ASN] | 0:327 [A] | ✔ |
C:206 [ASN] | 0:329 [A] | C:206 [ASN] | 0:329 [A] | ✔ |
C:206 [ASN] | 0:330 [C] | C:206 [ASN] | 0:330 [C] | ✔ |
C:206 [ASN] | 0:331 [A] | C:206 [ASN] | 0:331 [A] | ✔ |
C:30 [LEU] | 0:656 [G] | C:30 [LEU] | 0:656 [G] | ✔ |
C:30 [LEU] | 0:657 [G] | C:30 [LEU] | 0:657 [G] | ✔ |
C:181 [ALA] | 0:30 [U] | C:181 [ALA] | 0:30 [U] | ✔ |
C:181 [ALA] | 0:452 [G] | C:181 [ALA] | 0:452 [G] | ✔ |
C:41 [ASN] | 0:674 [A] | C:41 [ASN] | 0:674 [A] | ✔ |
C:41 [ASN] | 0:675 [U] | C:41 [ASN] | 0:675 [U] | ✔ |
C:41 [ASN] | 0:676 [C] | C:41 [ASN] | 0:676 [C] | ✔ |
C:214 [THR] | 0:672 [G] | C:214 [THR] | 0:672 [G] | ✔ |
C:96 [LYS] | 0:646 [G] | C:96 [LYS] | 0:646 [G] | ✔ |
C:96 [LYS] | 0:647 [U] | C:96 [LYS] | 0:647 [U] | ✔ |
C:96 [LYS] | 0:1350 [U] | C:96 [LYS] | 0:1350 [U] | ✔ |
C:96 [LYS] | 0:1351 [G] | C:96 [LYS] | 0:1351 [G] | ✔ |
C:42 [ARG] | 0:449 [A] | C:42 [ARG] | 0:449 [A] | ✔ |
C:42 [ARG] | 0:674 [A] | C:42 [ARG] | 0:674 [A] | ✔ |
C:42 [ARG] | 0:675 [U] | C:42 [ARG] | 0:675 [U] | ✔ |
C:67 [GLN] | 0:1359 [U] | C:67 [GLN] | 0:1359 [U] | ✔ |
C:67 [GLN] | 0:2101 [A] | C:67 [GLN] | 0:2101 [A] | ✔ |
C:176 [ALA] | 0:1306 [U] | C:176 [ALA] | 0:1306 [U] | ✔ |
C:176 [ALA] | 0:1343 [C] | C:176 [ALA] | 0:1343 [C] | ✔ |
C:176 [ALA] | 0:1344 [G] | C:176 [ALA] | 0:1344 [G] | ✔ |
C:56 [THR] | 0:474 [C] | C:56 [THR] | 0:474 [C] | ✔ |
C:56 [THR] | 0:475 [G] | C:56 [THR] | 0:475 [G] | ✔ |
C:56 [THR] | 0:891 [G] | C:56 [THR] | 0:891 [G] | ✔ |
C:212 [VAL] | 0:672 [G] | C:212 [VAL] | 0:672 [G] | ✔ |
C:207 [LEU] | 0:327 [A] | C:207 [LEU] | 0:327 [A] | ✔ |
C:207 [LEU] | 0:330 [C] | C:207 [LEU] | 0:330 [C] | ✔ |
C:107 [ARG] | 0:677 [C] | C:107 [ARG] | 0:677 [C] | ✔ |
C:107 [ARG] | 0:678 [G] | C:107 [ARG] | 0:678 [G] | ✔ |
C:101 [ASP] | 0:750 [A] | C:101 [ASP] | 0:750 [A] | ✔ |
C:101 [ASP] | 0:751 [U] | C:101 [ASP] | 0:751 [U] | ✔ |
C:52 [ALA] | 0:457 [U] | C:52 [ALA] | 0:457 [U] | ✔ |
C:52 [ALA] | 0:458 [G] | C:52 [ALA] | 0:458 [G] | ✔ |
C:79 [ARG] | 0:894 [A] | C:79 [ARG] | 0:894 [A] | ✔ |
C:51 [TYR] | 0:458 [G] | C:51 [TYR] | 0:458 [G] | ✔ |
C:51 [TYR] | 0:892 [G] | C:51 [TYR] | 0:892 [G] | ✔ |
C:51 [TYR] | 0:894 [A] | C:51 [TYR] | 0:894 [A] | ✔ |
C:148 [VAL] | 0:328 [U] | C:148 [VAL] | 0:328 [U] | ✔ |
C:99 [SER] | 0:751 [U] | C:99 [SER] | 0:751 [U] | ✔ |
C:102 [LEU] | 0:664 [U] | C:102 [LEU] | 0:664 [U] | ✔ |
C:102 [LEU] | 0:750 [A] | C:102 [LEU] | 0:750 [A] | ✔ |
C:95 [GLU] | 0:646 [G] | C:95 [GLU] | 0:646 [G] | ✔ |
C:95 [GLU] | 0:647 [U] | C:95 [GLU] | 0:647 [U] | ✔ |
C:81 [PRO] | 0:641 [G] | C:81 [PRO] | 0:641 [G] | ✔ |
C:81 [PRO] | 0:642 [G] | C:81 [PRO] | 0:642 [G] | ✔ |
C:81 [PRO] | 0:763 [C] | C:81 [PRO] | 0:763 [C] | ✔ |
C:81 [PRO] | 0:764 [C] | C:81 [PRO] | 0:764 [C] | ✔ |
C:226 [GLY] | 0:1307 [A] | C:226 [GLY] | 0:1307 [A] | ✔ |
C:226 [GLY] | 0:1308 [A] | C:226 [GLY] | 0:1308 [A] | ✔ |
C:216 [SER] | 0:677 [C] | C:216 [SER] | 0:677 [C] | ✔ |
C:174 [ILE] | 0:338 [C] | C:174 [ILE] | 0:338 [C] | ✔ |
C:174 [ILE] | 0:339 [A] | C:174 [ILE] | 0:339 [A] | ✔ |
C:174 [ILE] | 0:1312 [G] | C:174 [ILE] | 0:1312 [G] | ✔ |
C:174 [ILE] | 0:1342 [C] | C:174 [ILE] | 0:1342 [C] | ✔ |
C:174 [ILE] | 0:1343 [C] | C:174 [ILE] | 0:1343 [C] | ✔ |
C:48 [SER] | 0:34 [C] | C:48 [SER] | 0:34 [C] | ✔ |
C:48 [SER] | 0:35 [U] | C:48 [SER] | 0:35 [U] | ✔ |
C:48 [SER] | 0:456 [G] | C:48 [SER] | 0:456 [G] | ✔ |
C:48 [SER] | 0:457 [U] | C:48 [SER] | 0:457 [U] | ✔ |
C:48 [SER] | 0:1352 [A] | C:48 [SER] | 0:1352 [A] | ✔ |
C:217 [GLU] | 0:670 [G] | C:217 [GLU] | 0:670 [G] | ✔ |
C:217 [GLU] | 0:671 [A] | C:217 [GLU] | 0:671 [A] | ✔ |
C:217 [GLU] | 0:672 [G] | C:217 [GLU] | 0:672 [G] | ✔ |
C:217 [GLU] | 0:676 [C] | C:217 [GLU] | 0:676 [C] | ✔ |
C:217 [GLU] | 0:677 [C] | C:217 [GLU] | 0:677 [C] | ✔ |
C:61 [PHE] | 0:767 [A] | C:61 [PHE] | 0:767 [A] | ✔ |
C:177 [GLY] | 0:29 [C] | C:177 [GLY] | 0:29 [C] | ✔ |
C:177 [GLY] | 0:1305 [C] | C:177 [GLY] | 0:1305 [C] | ✔ |
C:177 [GLY] | 0:1343 [C] | C:177 [GLY] | 0:1343 [C] | ✔ |
C:177 [GLY] | 0:1344 [G] | C:177 [GLY] | 0:1344 [G] | ✔ |
C:39 [GLN] | 0:675 [U] | C:39 [GLN] | 0:675 [U] | ✔ |
C:39 [GLN] | 0:1307 [A] | C:39 [GLN] | 0:1307 [A] | ✔ |
C:62 [GLY] | 0:766 [A] | C:62 [GLY] | 0:766 [A] | ✔ |
C:62 [GLY] | 0:767 [A] | C:62 [GLY] | 0:767 [A] | ✔ |
C:62 [GLY] | 0:1359 [U] | C:62 [GLY] | 0:1359 [U] | ✔ |
C:190 [ALA] | 0:1308 [A] | C:190 [ALA] | 0:1308 [A] | ✔ |
C:190 [ALA] | 0:1309 [U] | C:190 [ALA] | 0:1309 [U] | ✔ |
C:63 [SER] | 0:767 [A] | C:63 [SER] | 0:767 [A] | ✔ |
C:63 [SER] | 0:1359 [U] | C:63 [SER] | 0:1359 [U] | ✔ |
C:63 [SER] | 0:2100 [A] | C:63 [SER] | 0:2100 [A] | ✔ |
C:63 [SER] | 0:2101 [A] | C:63 [SER] | 0:2101 [A] | ✔ |
C:63 [SER] | 0:2479 [A] | C:63 [SER] | 0:2479 [A] | ✔ |
C:203 [ALA] | 0:328 [U] | C:203 [ALA] | 0:328 [U] | ✔ |
C:68 [ALA] | 0:1359 [U] | C:68 [ALA] | 0:1359 [U] | ✔ |
C:68 [ALA] | 0:1360 [C] | C:68 [ALA] | 0:1360 [C] | ✔ |
C:68 [ALA] | 0:1361 [C] | C:68 [ALA] | 0:1361 [C] | ✔ |
C:100 [LEU] | 0:750 [A] | C:100 [LEU] | 0:750 [A] | ✔ |
C:100 [LEU] | 0:751 [U] | C:100 [LEU] | 0:751 [U] | ✔ |
C:100 [LEU] | 0:752 [G] | C:100 [LEU] | 0:752 [G] | ✔ |
C:54 [LEU] | 0:458 [G] | C:54 [LEU] | 0:458 [G] | ✔ |
C:54 [LEU] | 0:894 [A] | C:54 [LEU] | 0:894 [A] | ✔ |
C:185 [LYS] | 0:333 [G] | C:185 [LYS] | 0:333 [G] | ✔ |
C:185 [LYS] | 0:338 [C] | C:185 [LYS] | 0:338 [C] | ✔ |
C:185 [LYS] | 0:339 [A] | C:185 [LYS] | 0:339 [A] | ✔ |
C:222 [ASP] | 0:672 [G] | C:222 [ASP] | 0:672 [G] | ✔ |
C:92 [PRO] | 0:450 [C] | C:92 [PRO] | 0:450 [C] | ✔ |
C:92 [PRO] | 0:1352 [A] | C:92 [PRO] | 0:1352 [A] | ✔ |
C:78 [ARG] | 0:475 [G] | C:78 [ARG] | 0:475 [G] | ✔ |
C:78 [ARG] | 0:476 [A] | C:78 [ARG] | 0:476 [A] | ✔ |
C:205 [ARG] | 0:328 [U] | C:205 [ARG] | 0:328 [U] | ✔ |
C:205 [ARG] | 0:329 [A] | C:205 [ARG] | 0:329 [A] | ✔ |
C:205 [ARG] | 0:347 [A] | C:205 [ARG] | 0:347 [A] | ✔ |
C:205 [ARG] | 0:348 [C] | C:205 [ARG] | 0:348 [C] | ✔ |
C:27 [ARG] | 0:656 [G] | C:27 [ARG] | 0:656 [G] | ✔ |
C:27 [ARG] | 0:657 [G] | C:27 [ARG] | 0:657 [G] | ✔ |
C:213 [ALA] | 0:672 [G] | C:213 [ALA] | 0:672 [G] | ✔ |
C:182 [ARG] | 0:448 [G] | C:182 [ARG] | 0:448 [G] | ✔ |
C:182 [ARG] | 0:449 [A] | C:182 [ARG] | 0:449 [A] | ✔ |
C:182 [ARG] | 0:450 [C] | C:182 [ARG] | 0:450 [C] | ✔ |
C:182 [ARG] | 0:451 [C] | C:182 [ARG] | 0:451 [C] | ✔ |
C:182 [ARG] | 0:452 [G] | C:182 [ARG] | 0:452 [G] | ✔ |
C:182 [ARG] | 0:1305 [C] | C:182 [ARG] | 0:1305 [C] | ✔ |
C:47 [GLY] | 0:34 [C] | C:47 [GLY] | 0:34 [C] | ✔ |
C:47 [GLY] | 0:35 [U] | C:47 [GLY] | 0:35 [U] | ✔ |
C:46 [TYR] | 0:35 [U] | C:46 [TYR] | 0:35 [U] | ✔ |
C:46 [TYR] | 0:448 [G] | C:46 [TYR] | 0:448 [G] | ✔ |
C:46 [TYR] | 0:450 [C] | C:46 [TYR] | 0:450 [C] | ✔ |
C:46 [TYR] | 0:1351 [G] | C:46 [TYR] | 0:1351 [G] | ✔ |
C:46 [TYR] | 0:1352 [A] | C:46 [TYR] | 0:1352 [A] | ✔ |
C:91 [PRO] | 0:645 [U] | C:91 [PRO] | 0:645 [U] | ✔ |
C:91 [PRO] | 0:1352 [A] | C:91 [PRO] | 0:1352 [A] | ✔ |
C:65 [ARG] | 0:2100 [A] | C:65 [ARG] | 0:2100 [A] | ✔ |
C:65 [ARG] | 0:2101 [A] | C:65 [ARG] | 0:2101 [A] | ✔ |
C:225 [PRO] | 0:1308 [A] | C:225 [PRO] | 0:1308 [A] | ✔ |
C:187 [ARG] | 0:1308 [A] | C:187 [ARG] | 0:1308 [A] | ✔ |
C:187 [ARG] | 0:1309 [U] | C:187 [ARG] | 0:1309 [U] | ✔ |
C:187 [ARG] | 0:1310 [U] | C:187 [ARG] | 0:1310 [U] | ✔ |
C:66 [GLY] | 0:1359 [U] | C:66 [GLY] | 0:1359 [U] | ✔ |
C:66 [GLY] | 0:2100 [A] | C:66 [GLY] | 0:2100 [A] | ✔ |
C:66 [GLY] | 0:2101 [A] | C:66 [GLY] | 0:2101 [A] | ✔ |
C:128 [GLY] | 0:1309 [U] | C:128 [GLY] | 0:1309 [U] | ✔ |
C:128 [GLY] | 0:1310 [U] | C:128 [GLY] | 0:1310 [U] | ✔ |
C:109 [LEU] | 0:657 [G] | C:109 [LEU] | 0:657 [G] | ✔ |
C:109 [LEU] | 0:658 [C] | C:109 [LEU] | 0:658 [C] | ✔ |
C:80 [VAL] | 0:764 [C] | C:80 [VAL] | 0:764 [C] | ✔ |
C:80 [VAL] | 0:765 [G] | C:80 [VAL] | 0:765 [G] | ✔ |
C:50 [GLU] | 0:35 [U] | C:50 [GLU] | 0:35 [U] | ✔ |
C:103 [ASN] | 0:656 [G] | C:103 [ASN] | 0:656 [G] | ✔ |
C:103 [ASN] | 0:657 [G] | C:103 [ASN] | 0:657 [G] | ✔ |
C:103 [ASN] | 0:663 [C] | C:103 [ASN] | 0:663 [C] | ✔ |
C:103 [ASN] | 0:664 [U] | C:103 [ASN] | 0:664 [U] | ✔ |
C:103 [ASN] | 0:749 [C] | C:103 [ASN] | 0:749 [C] | ✔ |
C:103 [ASN] | 0:750 [A] | C:103 [ASN] | 0:750 [A] | ✔ |
C:71 [PRO] | 0:764 [C] | C:71 [PRO] | 0:764 [C] | ✔ |
C:71 [PRO] | 0:765 [G] | C:71 [PRO] | 0:765 [G] | ✔ |
C:77 [ALA] | 0:1361 [C] | C:77 [ALA] | 0:1361 [C] | ✔ |
C:77 [ALA] | 0:1362 [U] | C:77 [ALA] | 0:1362 [U] | ✔ |
C:104 [ASP] | 0:664 [U] | C:104 [ASP] | 0:664 [U] | ✔ |
C:104 [ASP] | 0:680 [G] | C:104 [ASP] | 0:680 [G] | ✔ |
C:64 [GLY] | 0:1359 [U] | C:64 [GLY] | 0:1359 [U] | ✔ |
C:64 [GLY] | 0:2100 [A] | C:64 [GLY] | 0:2100 [A] | ✔ |
C:64 [GLY] | 0:2101 [A] | C:64 [GLY] | 0:2101 [A] | ✔ |
C:208 [ALA] | 0:330 [C] | C:208 [ALA] | 0:330 [C] | ✔ |
C:175 [LYS] | 0:1306 [U] | C:175 [LYS] | 0:1306 [U] | ✔ |
C:175 [LYS] | 0:1307 [A] | C:175 [LYS] | 0:1307 [A] | ✔ |
C:175 [LYS] | 0:1343 [C] | C:175 [LYS] | 0:1343 [C] | ✔ |
C:89 [ALA] | 0:643 [A] | C:89 [ALA] | 0:643 [A] | ✔ |
C:89 [ALA] | 0:763 [C] | C:89 [ALA] | 0:763 [C] | ✔ |
C:89 [ALA] | 0:894 [A] | C:89 [ALA] | 0:894 [A] | ✔ |
C:111 [VAL] | 0:677 [C] | C:111 [VAL] | 0:677 [C] | ✔ |
C:83 [ALA] | 0:455 [A] | C:83 [ALA] | 0:455 [A] | ✔ |
C:83 [ALA] | 0:1361 [C] | C:83 [ALA] | 0:1361 [C] | ✔ |
C:86 [GLY] | 0:455 [A] | C:86 [GLY] | 0:455 [A] | ✔ |
C:86 [GLY] | 0:456 [G] | C:86 [GLY] | 0:456 [G] | ✔ |
C:44 [GLN] | 0:35 [U] | C:44 [GLN] | 0:35 [U] | ✔ |
C:44 [GLN] | 0:36 [C] | C:44 [GLN] | 0:36 [C] | ✔ |
C:44 [GLN] | 0:447 [A] | C:44 [GLN] | 0:447 [A] | ✔ |
C:44 [GLN] | 0:448 [G] | C:44 [GLN] | 0:448 [G] | ✔ |
C:44 [GLN] | 0:449 [A] | C:44 [GLN] | 0:449 [A] | ✔ |
C:44 [GLN] | 0:674 [A] | C:44 [GLN] | 0:674 [A] | ✔ |
C:180 [SER] | 0:333 [G] | C:180 [SER] | 0:333 [G] | ❌ 3CC2_C_0 |
C:90 [HIS] | 0:760 [G] | C:90 [HIS] | 0:760 [G] | ❌ 3CC2_C_0 |
C:84 [VAL] | 0:641 [G] | C:84 [VAL] | 0:641 [G] | ❌ 3CC2_C_0 |
C:149 [LYS] | 0:326 [G] | C:149 [LYS] | 0:326 [G] | ❌ 3CC2_C_0 |
C:62 [GLY] | 0:2101 [A] | C:62 [GLY] | 0:2101 [A] | ❌ 3CC2_C_0 |
C:78 [ARG] | 0:477 [A] | C:78 [ARG] | 0:477 [A] | ❌ 3CC2_C_0 |
C:47 [GLY] | 0:1352 [A] | C:47 [GLY] | 0:1352 [A] | ❌ 3CC2_C_0 |
C:46 [TYR] | 0:1350 [U] | C:46 [TYR] | 0:1350 [U] | ❌ 3CC2_C_0 |
C:104 [ASP] | 0:663 [C] | C:104 [ASP] | 0:663 [C] | ❌ 3CC2_C_0 |
C:83 [ALA] | 0:641 [G] | C:83 [ALA] | 0:641 [G] | ❌ 3CC2_C_0 |
C:103 [ASN] | 0:662 [U] | C:103 [ASN] | 0:662 [U] | ❌ 1VQ8_C_0 |
C:104 [ASP] | 0:678 [G] | C:104 [ASP] | 0:678 [G] | ❌ 1VQ8_C_0 |
C:105 [LYS] | 0:664 [U] | C:105 [LYS] | 0:664 [U] | ❌ 1VQ8_C_0 |
C:107 [ARG] | 0:676 [C] | C:107 [ARG] | 0:676 [C] | ❌ 1VQ8_C_0 |
C:175 [LYS] | 0:1305 [C] | C:175 [LYS] | 0:1305 [C] | ❌ 1VQ8_C_0 |
C:187 [ARG] | 0:1307 [A] | C:187 [ARG] | 0:1307 [A] | ❌ 1VQ8_C_0 |
C:208 [ALA] | 0:327 [A] | C:208 [ALA] | 0:327 [A] | ❌ 1VQ8_C_0 |
C:50 [GLU] | 0:894 [A] | C:50 [GLU] | 0:894 [A] | ❌ 1VQ8_C_0 |
C:70 [VAL] | 0:765 [G] | C:70 [VAL] | 0:765 [G] | ❌ 1VQ8_C_0 |
C:63 [SER] | 0:2102 [G] | C:63 [SER] | 0:2102 [G] | ❌ 3CC2_0:2102 no longer at interface |
C:151 [GLN] | 0:325 [U] | C:151 [GLN] | 0:325 [U] | ❌ 1VQ8_0:325 no longer at interface |
C:185 [LYS] | 0:334 [G] | C:185 [LYS] | 0:334 [G] | ❌ 1VQ8_0:334 no longer at interface |
C:220 [THR] | 0:677 [C] | C:220 [THR] | 0:677 [C] | ❌ 3CC2_C:220 no longer at interface |
C:129 [HIS] | 0:1309 [U] | C:129 [HIS] | 0:1309 [U] | ❌ 1VQ8_C:129 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal protein L4 | Archaeal large subunit ribosomal RNA | 1.0 | 0.17 | 0.98 | 1.0 | 1.0 | 0.99 | 0.99 | 0.99 | 0.98 | 0.92 | 0.21 |
Other pairs involving 1VQ8_C_0 or 3CC2_C_0
Total number of entries: 17