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All interfaces > All interologs > Interface groups > group126 > 1YHQ_C_0

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Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_C
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
C:27 [ARG] 0:656 [G] 3.52 0:749 [C] 88.19
C:27 [ARG] 0:657 [G] 2.27 0:748 [C] 88.19
C:29 [ASP] 0:656 [G] 4.16 0:749 [C] 83.77
C:30 [LEU] 0:656 [G] 3.45 0:749 [C] 77.55
C:30 [LEU] 0:657 [G] 4.27 0:748 [C] 77.55
C:33 [LYS] 0:656 [G] 4.48 0:749 [C] 76.68
C:33 [LYS] 0:750 [A] 3.62 0:655 [U] sugar:SC 76.68
C:33 [LYS] 0:751 [U] 4.16 0:654 [A] 76.68
C:36 [ARG] 0:1348 [A] 2.97 0:1306 [U] sugar:SC 13.97
C:36 [ARG] 0:1349 [G] 3.74 0:1305 [C] 13.97
C:37 [ALA] 0:675 [U] 4.86 65.57
C:37 [ALA] 0:676 [C] 4.06 0:670 [G] 65.57
C:38 [ALA] 0:675 [U] 2.65 sugar:BB 23.97
C:38 [ALA] 0:676 [C] 3.51 0:670 [G] 23.97
C:39 [GLN] 0:675 [U] 4.62 52.91
C:39 [GLN] 0:1307 [A] 3.05 0:1347 [U] sugar:SC 52.91
C:40 [ALA] 0:449 [A] 3.99 83.92
C:41 [ASN] 0:674 [A] 4.18 68.06
C:41 [ASN] 0:675 [U] 3.34 68.06
C:41 [ASN] 0:676 [C] 2.96 0:670 [G] 68.06
C:42 [ARG] 0:449 [A] 4.49 29.22
C:42 [ARG] 0:674 [A] 4.12 29.22
C:42 [ARG] 0:675 [U] 2.85 sugar:SC 29.22
C:43 [LYS] 0:449 [A] 3.16 68.98
C:43 [LYS] 0:1306 [U] 3.68 0:1348 [A] 68.98
C:44 [GLN] 0:35 [U] 4.88 0:447 [A] 87.67
C:44 [GLN] 0:36 [C] 4.07 0:446 [G] 87.67
C:44 [GLN] 0:447 [A] 2.47 0:35 [U] base:SC, sugar:SC 87.67
C:44 [GLN] 0:448 [G] 3.01 0:34 [C] 87.67
C:44 [GLN] 0:449 [A] 2.79 87.67
C:44 [GLN] 0:674 [A] 3.11 base/AA stacks 87.67
C:45 [ASP] 0:35 [U] 3.02 0:447 [A] 71.14
C:45 [ASP] 0:36 [C] 3.71 0:446 [G] 71.14
C:46 [TYR] 0:35 [U] 3.49 0:447 [A] 78.85
C:46 [TYR] 0:448 [G] 4.34 0:34 [C] 78.85
C:46 [TYR] 0:450 [C] 3.18 0:33 [G] 78.85
C:46 [TYR] 0:1351 [G] 4.14 0:1303 [C] 78.85
C:46 [TYR] 0:1352 [A] 2.85 78.85
C:47 [GLY] 0:34 [C] 2.6 0:448 [G] sugar:BB 80.02
C:47 [GLY] 0:35 [U] 3.18 0:447 [A] sugar:BB 80.02
C:48 [SER] 0:34 [C] 3.41 0:448 [G] 62.91
C:48 [SER] 0:35 [U] 4.59 0:447 [A] 62.91
C:48 [SER] 0:456 [G] 4.61 62.91
C:48 [SER] 0:457 [U] 3.37 62.91
C:48 [SER] 0:1352 [A] 3.38 62.91
C:49 [ASP] 0:34 [C] 3.49 0:448 [G] 53.93
C:49 [ASP] 0:35 [U] 3.54 0:447 [A] 53.93
C:49 [ASP] 0:457 [U] 2.79 53.93
C:50 [GLU] 0:35 [U] 4.66 0:447 [A] 46.78
C:51 [TYR] 0:458 [G] 3.88 24.54
C:51 [TYR] 0:892 [G] 4.65 0:769 [C] 24.54
C:51 [TYR] 0:894 [A] 4.26 24.54
C:52 [ALA] 0:457 [U] 3.41 98.45
C:52 [ALA] 0:458 [G] 3.37 98.45
C:53 [GLY] 0:457 [U] 4.79 97.19
C:53 [GLY] 0:458 [G] 2.88 97.19
C:54 [LEU] 0:458 [G] 4.7 44.4
C:54 [LEU] 0:894 [A] 3.83 44.4
C:55 [ARG] 0:457 [U] 3.06 58.0
C:55 [ARG] 0:458 [G] 3.01 58.0
C:55 [ARG] 0:475 [G] 4.04 0:466 [A] 58.0
C:56 [THR] 0:474 [C] 4.79 0:467 [G] 66.68
C:56 [THR] 0:475 [G] 2.79 0:466 [A] 66.68
C:56 [THR] 0:891 [G] 4.46 0:770 [C] 66.68
C:57 [PRO] 0:474 [C] 3.48 0:467 [G] 75.74
C:57 [PRO] 0:475 [G] 3.29 0:466 [A] 75.74
C:57 [PRO] 0:890 [C] 3.24 0:771 [G] 75.74
C:57 [PRO] 0:891 [G] 3.74 0:770 [C] 75.74
C:60 [SER] 0:765 [G] 3.87 0:899 [C] 65.78
C:60 [SER] 0:766 [A] 2.78 0:896 [C] 65.78
C:60 [SER] 0:767 [A] 4.89 0:895 [A] 65.78
C:61 [PHE] 0:766 [A] 4.94 0:896 [C] 15.23
C:61 [PHE] 0:767 [A] 4.53 0:895 [A] 15.23
C:62 [GLY] 0:766 [A] 3.55 0:896 [C] 77.84
C:62 [GLY] 0:767 [A] 4.15 0:895 [A] 77.84
C:62 [GLY] 0:1359 [U] 4.32 77.84
C:63 [SER] 0:767 [A] 4.45 0:895 [A] 64.88
C:63 [SER] 0:1359 [U] 3.56 base:SC 64.88
C:63 [SER] 0:2100 [A] 4.77 64.88
C:63 [SER] 0:2101 [A] 3.09 64.88
C:63 [SER] 0:2479 [A] 3.75 0:2107 [U] 64.88
C:64 [GLY] 0:1359 [U] 4.46 83.89
C:64 [GLY] 0:2100 [A] 3.19 83.89
C:64 [GLY] 0:2101 [A] 3.0 83.89
C:65 [ARG] 0:2100 [A] 4.21 54.34
C:65 [ARG] 0:2101 [A] 3.56 54.34
C:66 [GLY] 0:1359 [U] 3.02 95.99
C:66 [GLY] 0:2100 [A] 3.72 95.99
C:66 [GLY] 0:2101 [A] 2.82 95.99
C:67 [GLN] 0:1359 [U] 2.95 48.6
C:67 [GLN] 0:1361 [C] 4.95 0:640 [G] 48.6
C:67 [GLN] 0:2101 [A] 3.9 48.6
C:68 [ALA] 0:1359 [U] 3.9 86.39
C:68 [ALA] 0:1360 [C] 3.34 0:641 [G] 86.39
C:68 [ALA] 0:1361 [C] 3.84 0:640 [G] 86.39
C:69 [HIS] 0:764 [C] 4.03 0:900 [U] 95.36
C:69 [HIS] 0:765 [G] 2.79 0:899 [C] sugar:SC 95.36
C:69 [HIS] 0:766 [A] 3.79 0:896 [C] 95.36
C:69 [HIS] 0:1359 [U] 2.87 base:SC 95.36
C:69 [HIS] 0:2101 [A] 4.25 95.36
C:69 [HIS] 0:2479 [A] 4.09 0:2107 [U] 95.36
C:70 [VAL] 0:764 [C] 4.99 0:900 [U] 66.08
C:70 [VAL] 0:1360 [C] 3.56 0:641 [G] 66.08
C:70 [VAL] 0:1361 [C] 3.96 0:640 [G] 66.08
C:71 [PRO] 0:764 [C] 4.45 0:900 [U] 80.3
C:71 [PRO] 0:765 [G] 3.21 0:899 [C] 80.3
C:72 [LYS] 0:1361 [C] 4.2 0:640 [G] 90.97
C:72 [LYS] 0:1362 [U] 4.39 0:639 [A] 90.97
C:73 [LEU] 0:474 [C] 2.59 0:467 [G] 65.77
C:73 [LEU] 0:475 [G] 2.79 0:466 [A] 65.77
C:73 [LEU] 0:890 [C] 4.84 0:771 [G] 65.77
C:74 [ASP] 0:467 [G] 4.1 0:474 [C] 64.68
C:74 [ASP] 0:474 [C] 2.99 0:467 [G] sugar:SC 64.68
C:74 [ASP] 0:475 [G] 3.16 0:466 [A] sugar:SC 64.68
C:75 [GLY] 0:1362 [U] 4.22 0:639 [A] 78.25
C:76 [ARG] 0:476 [A] 4.07 0:465 [U] 56.67
C:76 [ARG] 0:1362 [U] 3.07 0:639 [A] 56.67
C:76 [ARG] 0:1363 [G] 2.39 0:638 [C] 56.67
C:77 [ALA] 0:1361 [C] 2.93 0:640 [G] 83.95
C:77 [ALA] 0:1362 [U] 3.16 0:639 [A] 83.95
C:78 [ARG] 0:475 [G] 4.27 0:466 [A] 75.43
C:78 [ARG] 0:476 [A] 2.91 0:465 [U] 75.43
C:78 [ARG] 0:477 [A] 4.98 0:463 [A] 75.43
C:79 [ARG] 0:894 [A] 4.51 57.39
C:80 [VAL] 0:764 [C] 3.13 0:900 [U] 77.75
C:80 [VAL] 0:765 [G] 3.84 0:899 [C] 77.75
C:81 [PRO] 0:642 [G] 3.35 0:1358 [A] 84.59
C:81 [PRO] 0:763 [C] 3.93 0:901 [G] 84.59
C:81 [PRO] 0:764 [C] 3.65 0:900 [U] 84.59
C:82 [GLN] 0:641 [G] 2.84 0:1360 [C] base:BB 31.58
C:82 [GLN] 0:642 [G] 3.58 0:1358 [A] 31.58
C:82 [GLN] 0:763 [C] 4.43 0:901 [G] 31.58
C:82 [GLN] 0:764 [C] 3.34 0:900 [U] sugar:SC 31.58
C:82 [GLN] 0:1358 [A] 3.43 0:642 [G] base/AA stacks 31.58
C:82 [GLN] 0:1360 [C] 3.3 0:641 [G] sugar:SC 31.58
C:82 [GLN] 0:1361 [C] 3.24 0:640 [G] 31.58
C:83 [ALA] 0:455 [A] 4.85 0:460 [A] 69.22
C:83 [ALA] 0:1361 [C] 3.49 0:640 [G] 69.22
C:84 [VAL] 0:454 [U] 3.23 72.94
C:84 [VAL] 0:455 [A] 3.93 0:460 [A] 72.94
C:84 [VAL] 0:640 [G] 3.78 0:1361 [C] 72.94
C:84 [VAL] 0:1361 [C] 2.98 0:640 [G] sugar:BB 72.94
C:84 [VAL] 0:1362 [U] 3.34 0:639 [A] 72.94
C:85 [LYS] 0:454 [U] 4.53 75.24
C:85 [LYS] 0:455 [A] 2.94 0:460 [A] 75.24
C:85 [LYS] 0:458 [G] 3.12 75.24
C:85 [LYS] 0:459 [A] 3.35 75.24
C:85 [LYS] 0:476 [A] 4.07 0:465 [U] 75.24
C:85 [LYS] 0:477 [A] 2.76 0:463 [A] 75.24
C:86 [GLY] 0:455 [A] 4.68 0:460 [A] 99.0
C:86 [GLY] 0:456 [G] 4.59 99.0
C:87 [ARG] 0:763 [C] 3.59 0:901 [G] 91.99
C:87 [ARG] 0:764 [C] 2.78 0:900 [U] 91.99
C:87 [ARG] 0:894 [A] 2.7 base/AA stacks 91.99
C:88 [SER] 0:456 [G] 4.11 63.4
C:88 [SER] 0:1352 [A] 3.38 base:SC 63.4
C:89 [ALA] 0:643 [A] 3.5 0:1355 [A] 84.52
C:89 [ALA] 0:763 [C] 4.55 0:901 [G] 84.52
C:89 [ALA] 0:894 [A] 4.86 84.52
C:90 [HIS] 0:643 [A] 3.75 0:1355 [A] 91.28
C:90 [HIS] 0:644 [G] 3.92 0:903 [U] 91.28
C:90 [HIS] 0:645 [U] 3.25 0:761 [A] base/AA stacks 91.28
C:90 [HIS] 0:762 [C] 2.92 0:902 [G] sugar:SC 91.28
C:90 [HIS] 0:763 [C] 3.67 0:901 [G] 91.28
C:90 [HIS] 0:1352 [A] 3.62 91.28
C:91 [PRO] 0:645 [U] 4.23 0:761 [A] 90.68
C:91 [PRO] 0:1352 [A] 3.67 90.68
C:92 [PRO] 0:450 [C] 4.3 0:33 [G] 94.87
C:92 [PRO] 0:1352 [A] 3.2 94.87
C:93 [LYS] 0:645 [U] 2.71 0:761 [A] base:SC, sugar:SC 63.7
C:93 [LYS] 0:646 [G] 3.41 0:759 [C] 63.7
C:93 [LYS] 0:760 [G] 4.12 63.7
C:93 [LYS] 0:761 [A] 4.36 0:645 [U] 63.7
C:94 [THR] 0:35 [U] 3.22 0:447 [A] 57.96
C:94 [THR] 0:36 [C] 4.0 0:446 [G] 57.96
C:95 [GLU] 0:646 [G] 3.69 0:759 [C] 50.56
C:95 [GLU] 0:647 [U] 3.4 0:758 [A] 50.56
C:96 [LYS] 0:646 [G] 3.33 0:759 [C] 84.57
C:96 [LYS] 0:647 [U] 3.57 0:758 [A] 84.57
C:96 [LYS] 0:1350 [U] 4.66 0:1304 [U] 84.57
C:96 [LYS] 0:1351 [G] 2.37 0:1303 [C] 84.57
C:97 [ASP] 0:646 [G] 4.25 0:759 [C] 43.49
C:97 [ASP] 0:647 [U] 2.9 0:758 [A] 43.49
C:99 [SER] 0:751 [U] 4.44 0:654 [A] 43.35
C:100 [LEU] 0:750 [A] 4.95 0:655 [U] 43.95
C:100 [LEU] 0:751 [U] 3.73 0:654 [A] 43.95
C:100 [LEU] 0:752 [G] 4.03 0:653 [U] 43.95
C:101 [ASP] 0:750 [A] 3.08 0:655 [U] 64.37
C:101 [ASP] 0:751 [U] 2.82 0:654 [A] 64.37
C:102 [LEU] 0:664 [U] 3.91 0:682 [A] 75.11
C:102 [LEU] 0:750 [A] 4.23 0:655 [U] 75.11
C:103 [ASN] 0:656 [G] 3.72 0:749 [C] 97.3
C:103 [ASN] 0:657 [G] 3.71 0:748 [C] base:SC 97.3
C:103 [ASN] 0:663 [C] 3.57 0:683 [G] 97.3
C:103 [ASN] 0:664 [U] 3.55 0:682 [A] 97.3
C:103 [ASN] 0:749 [C] 2.71 0:656 [G] base:SC, sugar:SC 97.3
C:103 [ASN] 0:750 [A] 3.12 0:655 [U] sugar:SC 97.3
C:104 [ASP] 0:663 [C] 5.0 0:683 [G] 70.54
C:104 [ASP] 0:664 [U] 2.99 0:682 [A] 70.54
C:104 [ASP] 0:678 [G] 4.88 0:668 [C] 70.54
C:104 [ASP] 0:680 [G] 4.25 0:666 [A] 70.54
C:105 [LYS] 0:657 [G] 3.64 0:748 [C] 91.05
C:105 [LYS] 0:658 [C] 3.29 0:747 [G] sugar:SC 91.05
C:105 [LYS] 0:662 [U] 3.42 0:684 [G] 91.05
C:105 [LYS] 0:663 [C] 2.84 0:683 [G] 91.05
C:105 [LYS] 0:664 [U] 5.0 0:682 [A] 91.05
C:106 [GLU] 0:656 [G] 3.14 0:749 [C] base:SC 89.14
C:106 [GLU] 0:657 [G] 3.22 0:748 [C] 89.14
C:107 [ARG] 0:676 [C] 4.94 0:670 [G] 68.37
C:107 [ARG] 0:677 [C] 3.0 0:669 [G] 68.37
C:107 [ARG] 0:678 [G] 2.74 0:668 [C] 68.37
C:108 [GLN] 0:678 [G] 2.9 0:668 [C] 41.95
C:108 [GLN] 0:679 [G] 4.67 0:667 [C] 41.95
C:109 [LEU] 0:657 [G] 3.98 0:748 [C] 55.62
C:109 [LEU] 0:658 [C] 4.29 0:747 [G] 55.62
C:111 [VAL] 0:677 [C] 4.49 0:669 [G] 60.03
C:127 [ARG] 0:1308 [A] 3.02 0:1346 [U] 88.69
C:127 [ARG] 0:1309 [U] 2.84 0:1345 [A] 88.69
C:128 [GLY] 0:1309 [U] 4.08 0:1345 [A] 82.29
C:128 [GLY] 0:1310 [U] 3.54 0:1344 [G] 82.29
C:148 [VAL] 0:328 [U] 3.52 14.34
C:149 [LYS] 0:326 [G] 4.9 0:330 [C] 86.44
C:149 [LYS] 0:327 [A] 2.48 86.44
C:149 [LYS] 0:328 [U] 2.68 86.44
C:150 [THR] 0:327 [A] 3.32 93.82
C:150 [THR] 0:328 [U] 2.86 93.82
C:150 [THR] 0:329 [A] 4.04 0:346 [U] 93.82
C:151 [GLN] 0:326 [G] 2.89 0:330 [C] 66.58
C:151 [GLN] 0:327 [A] 3.21 base:SC 66.58
C:151 [GLN] 0:328 [U] 4.75 66.58
C:154 [VAL] 0:327 [A] 3.92 10.23
C:168 [ARG] 0:1309 [U] 3.71 0:1345 [A] 73.57
C:168 [ARG] 0:1310 [U] 2.72 0:1344 [G] 73.57
C:170 [ASP] 0:330 [C] 3.28 0:326 [G] base:SC 37.29
C:170 [ASP] 0:340 [A] 4.97 0:325 [U] 37.29
C:172 [THR] 0:339 [A] 3.86 0:308 [U] 52.56
C:172 [THR] 0:340 [A] 4.98 0:325 [U] 52.56
C:173 [LYS] 0:1309 [U] 4.05 0:1345 [A] 54.34
C:173 [LYS] 0:1310 [U] 3.31 0:1344 [G] base:SC 54.34
C:173 [LYS] 0:1311 [G] 3.28 0:1343 [C] 54.34
C:173 [LYS] 0:1343 [C] 4.13 0:1311 [G] 54.34
C:173 [LYS] 0:1344 [G] 2.76 0:1310 [U] base:SC 54.34
C:173 [LYS] 0:1345 [A] 3.97 0:1309 [U] 54.34
C:174 [ILE] 0:338 [C] 3.1 66.23
C:174 [ILE] 0:339 [A] 4.03 0:308 [U] 66.23
C:174 [ILE] 0:1312 [G] 4.73 0:1342 [C] 66.23
C:174 [ILE] 0:1342 [C] 3.5 0:1312 [G] 66.23
C:174 [ILE] 0:1343 [C] 2.8 0:1311 [G] base:BB 66.23
C:175 [LYS] 0:1306 [U] 2.82 0:1348 [A] 83.58
C:175 [LYS] 0:1307 [A] 2.81 0:1347 [U] 83.58
C:175 [LYS] 0:1343 [C] 3.88 0:1311 [G] 83.58
C:176 [ALA] 0:1306 [U] 4.45 0:1348 [A] 73.0
C:176 [ALA] 0:1343 [C] 3.49 0:1311 [G] 73.0
C:176 [ALA] 0:1344 [G] 3.79 0:1310 [U] 73.0
C:177 [GLY] 0:29 [C] 4.34 0:479 [G] 88.9
C:177 [GLY] 0:1305 [C] 3.52 0:1349 [G] 88.9
C:177 [GLY] 0:1343 [C] 2.96 0:1311 [G] 88.9
C:177 [GLY] 0:1344 [G] 4.49 0:1310 [U] 88.9
C:178 [GLN] 0:29 [C] 3.72 0:479 [G] 66.55
C:178 [GLN] 0:30 [U] 4.36 0:453 [A] 66.55
C:178 [GLN] 0:452 [G] 3.23 sugar:SC 66.55
C:178 [GLN] 0:1305 [C] 2.86 0:1349 [G] 66.55
C:179 [GLY] 0:1305 [C] 3.74 0:1349 [G] 78.03
C:179 [GLY] 0:1306 [U] 3.26 0:1348 [A] 78.03
C:180 [SER] 0:29 [C] 4.58 0:479 [G] 69.67
C:180 [SER] 0:30 [U] 4.77 0:453 [A] 69.67
C:181 [ALA] 0:30 [U] 3.42 0:453 [A] 49.74
C:181 [ALA] 0:452 [G] 4.0 49.74
C:182 [ARG] 0:448 [G] 4.56 0:34 [C] 96.51
C:182 [ARG] 0:449 [A] 4.39 96.51
C:182 [ARG] 0:450 [C] 2.76 0:33 [G] 96.51
C:182 [ARG] 0:451 [C] 2.87 0:32 [G] base/AA stacks 96.51
C:182 [ARG] 0:452 [G] 2.92 base:SC, base:SC 96.51
C:183 [GLY] 0:332 [G] 4.26 0:344 [C] 72.8
C:184 [ARG] 0:448 [G] 3.25 0:34 [C] sugar:SC 93.48
C:184 [ARG] 0:449 [A] 3.55 93.48
C:184 [ARG] 0:450 [C] 2.22 0:33 [G] 93.48
C:184 [ARG] 0:1305 [C] 2.89 0:1349 [G] 93.48
C:184 [ARG] 0:1306 [U] 2.99 0:1348 [A] 93.48
C:184 [ARG] 0:1307 [A] 4.99 0:1347 [U] 93.48
C:185 [LYS] 0:333 [G] 3.69 0:343 [C] 42.73
C:185 [LYS] 0:338 [C] 4.72 42.73
C:185 [LYS] 0:339 [A] 4.67 0:308 [U] 42.73
C:186 [TYR] 0:332 [G] 3.96 0:344 [C] 33.81
C:186 [TYR] 0:333 [G] 3.42 0:343 [C] 33.81
C:186 [TYR] 0:338 [C] 4.79 33.81
C:186 [TYR] 0:339 [A] 2.72 0:308 [U] 33.81
C:187 [ARG] 0:1308 [A] 2.97 0:1346 [U] 65.25
C:187 [ARG] 0:1309 [U] 3.26 0:1345 [A] 65.25
C:187 [ARG] 0:1310 [U] 4.03 0:1344 [G] 65.25
C:188 [ARG] 0:330 [C] 3.76 0:326 [G] 2.69
C:188 [ARG] 0:331 [A] 4.82 0:345 [G] 2.69
C:188 [ARG] 0:1308 [A] 4.55 0:1346 [U] 2.69
C:188 [ARG] 0:1309 [U] 4.29 0:1345 [A] 2.69
C:189 [PRO] 0:1309 [U] 3.36 0:1345 [A] 47.01
C:189 [PRO] 0:1310 [U] 4.16 0:1344 [G] 47.01
C:190 [ALA] 0:1308 [A] 4.21 0:1346 [U] 56.76
C:190 [ALA] 0:1309 [U] 3.14 0:1345 [A] 56.76
C:200 [PRO] 0:672 [G] 3.84 26.97
C:202 [THR] 0:328 [U] 3.03 61.67
C:202 [THR] 0:329 [A] 4.18 0:346 [U] 61.67
C:203 [ALA] 0:328 [U] 4.28 89.24
C:205 [ARG] 0:328 [U] 3.72 58.88
C:205 [ARG] 0:329 [A] 2.6 0:346 [U] 58.88
C:205 [ARG] 0:347 [A] 2.74 0:304 [G] sugar:SC 58.88
C:205 [ARG] 0:348 [C] 4.4 0:303 [C] 58.88
C:206 [ASN] 0:326 [G] 3.76 0:330 [C] 96.91
C:206 [ASN] 0:327 [A] 2.8 base:SC 96.91
C:206 [ASN] 0:329 [A] 3.0 0:346 [U] 96.91
C:206 [ASN] 0:330 [C] 2.91 0:326 [G] base:SC, sugar:BB 96.91
C:206 [ASN] 0:331 [A] 4.68 0:345 [G] 96.91
C:207 [LEU] 0:327 [A] 4.01 65.61
C:207 [LEU] 0:330 [C] 4.06 0:326 [G] 65.61
C:208 [ALA] 0:327 [A] 4.87 53.57
C:208 [ALA] 0:330 [C] 3.94 0:326 [G] 53.57
C:209 [GLY] 0:330 [C] 4.82 0:326 [G] 78.89
C:212 [VAL] 0:672 [G] 4.34 67.76
C:213 [ALA] 0:672 [G] 3.17 43.78
C:214 [THR] 0:672 [G] 3.02 base:BB 1.6
C:216 [SER] 0:677 [C] 2.91 0:669 [G] sugar:BB 26.66
C:217 [GLU] 0:670 [G] 3.04 0:676 [C] base:SC 27.73
C:217 [GLU] 0:671 [A] 3.04 sugar:SC 27.73
C:217 [GLU] 0:672 [G] 3.31 base/AA stacks 27.73
C:217 [GLU] 0:676 [C] 3.73 0:670 [G] sugar:BB 27.73
C:217 [GLU] 0:677 [C] 3.4 0:669 [G] 27.73
C:218 [VAL] 0:672 [G] 3.49 68.57
C:218 [VAL] 0:677 [C] 4.54 0:669 [G] 68.57
C:219 [ASN] 0:672 [G] 3.68 76.65
C:219 [ASN] 0:676 [C] 2.68 0:670 [G] sugar:SC 76.65
C:219 [ASN] 0:677 [C] 4.27 0:669 [G] 76.65
C:221 [GLU] 0:675 [U] 4.35 14.31
C:222 [ASP] 0:672 [G] 2.7 base:SC, base:SC 51.75
C:225 [PRO] 0:1308 [A] 3.54 0:1346 [U] 72.65
C:226 [GLY] 0:1307 [A] 3.46 0:1347 [U] 75.91
C:226 [GLY] 0:1308 [A] 3.23 0:1346 [U] 75.91
C:228 [ALA] 0:1308 [A] 3.68 0:1346 [U] 7.25
C:246 [ARG] 0:677 [C] 3.43 0:669 [G] 64.16
C:246 [ARG] 0:678 [G] 3.73 0:668 [C] 64.16

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group126 1YHQ_C_0 C: 50s ribosomal protein l4e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P12735 Ribosomal protein L4 Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_C_0 1YHQ_C_0 0.99 1.0 0.17 1.0 Ribosomal protein L4 Archaeal large subunit ribosomal RNA compare
1YHQ_C_0 7K00_e_a 0.65 0.91 2.39 0.2 Ribosomal protein L4 compare
1YHQ_C_0 7O7Y_BC_B5,B8 0.73 0.94 1.36 0.3 Ribosomal protein L4 compare
1YHQ_C_0 6S0Z_E_A 0.68 0.92 2.18 0.2 Ribosomal protein L4 compare
1YHQ_C_0 4Y4O_1F_1A 0.65 0.92 2.09 0.24 Ribosomal protein L4 compare
1YHQ_C_0 7RYG_E_A 0.62 0.92 2.45 0.22 Ribosomal protein L4 compare
1YHQ_C_0 7OF0_F_A 0.58 0.93 2.5 0.21 Ribosomal protein L4 compare
1YHQ_C_0 3CC2_C_0 0.99 1.0 0.13 0.99 Ribosomal protein L4 Archaeal large subunit ribosomal RNA compare
1YHQ_C_0 6AZ3_C_1,7 0.72 0.69 1.45 0.3 compare