RNAprotDB

All interfaces > All interologs > Interface groups > group126 > 1YHQ_C_0 vs 4Y4O_1F_1A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1YHQ_C
1YHQ_0
4Y4O_1F
4Y4O_1A
Conserved?
C:88 [SER] 0:456 [G] 1F:88 [VAL] 1A:476 [G]
C:88 [SER] 0:1352 [A] 1F:88 [VAL] 1A:1294 [G]
C:85 [LYS] 0:454 [U] 1F:85 [GLY] 1A:474 [U]
C:85 [LYS] 0:455 [A] 1F:85 [GLY] 1A:475 [A]
C:85 [LYS] 0:458 [G] 1F:85 [GLY] 1A:478 [G]
C:90 [HIS] 0:644 [G] 1F:90 [PHE] 1A:610 [C]
C:90 [HIS] 0:645 [U] 1F:90 [PHE] 1A:611 [U]
C:90 [HIS] 0:762 [C] 1F:90 [PHE] 1A:718 [C]
C:90 [HIS] 0:763 [C] 1F:90 [PHE] 1A:719 [C]
C:90 [HIS] 0:1352 [A] 1F:90 [PHE] 1A:1294 [G]
C:45 [ASP] 0:35 [U] 1F:47 [GLY] 1A:38 [A]
C:84 [VAL] 0:454 [U] 1F:84 [VAL] 1A:474 [U]
C:84 [VAL] 0:455 [A] 1F:84 [VAL] 1A:475 [A]
C:84 [VAL] 0:640 [G] 1F:84 [VAL] 1A:606 [G]
C:84 [VAL] 0:1361 [C] 1F:84 [VAL] 1A:1303 [C]
C:84 [VAL] 0:1362 [U] 1F:84 [VAL] 1A:1304 [C]
C:53 [GLY] 0:458 [G] 1F:57 [VAL] 1A:478 [G]
C:246 [ARG] 0:677 [C] 1F:205 [ARG] 1A:641 [G]
C:246 [ARG] 0:678 [G] 1F:205 [ARG] 1A:642 [G]
C:150 [THR] 0:327 [A] 1F:136 [THR] 1A:344 [A]
C:150 [THR] 0:328 [U] 1F:136 [THR] 1A:345 [G]
C:150 [THR] 0:329 [A] 1F:136 [THR] 1A:346 [A]
C:154 [VAL] 0:327 [A] 1F:140 [LEU] 1A:344 [A]
C:94 [THR] 0:35 [U] 1F:94 [PRO] 1A:38 [A]
C:94 [THR] 0:36 [C] 1F:94 [PRO] 1A:39 [C]
C:219 [ASN] 0:676 [C] 1F:182 [ASN] 1A:640 [A]
C:219 [ASN] 0:677 [C] 1F:182 [ASN] 1A:641 [G]
C:36 [ARG] 0:1349 [G] 1F:38 [ARG] 1A:1291 [G]
C:108 [GLN] 0:678 [G] 1F:107 [LYS] 1A:642 [G]
C:38 [ALA] 0:676 [C] 1F:40 [GLN] 1A:640 [A]
C:202 [THR] 0:328 [U] 1F:165 [ARG] 1A:345 [G]
C:202 [THR] 0:329 [A] 1F:165 [ARG] 1A:346 [A]
C:43 [LYS] 0:449 [A] 1F:45 [ARG] 1A:469 [A]
C:151 [GLN] 0:327 [A] 1F:137 [LYS] 1A:344 [A]
C:151 [GLN] 0:328 [U] 1F:137 [LYS] 1A:345 [G]
C:149 [LYS] 0:326 [G] 1F:135 [LYS] 1A:343 [C]
C:149 [LYS] 0:327 [A] 1F:135 [LYS] 1A:344 [A]
C:149 [LYS] 0:328 [U] 1F:135 [LYS] 1A:345 [G]
C:49 [ASP] 0:34 [C] 1F:52 [LYS] 1A:37 [C]
C:49 [ASP] 0:35 [U] 1F:52 [LYS] 1A:38 [A]
C:49 [ASP] 0:457 [U] 1F:52 [LYS] 1A:477 [C]
C:55 [ARG] 0:458 [G] 1F:59 [TYR] 1A:478 [G]
C:55 [ARG] 0:475 [G] 1F:59 [TYR] 1A:495 [G]
C:69 [HIS] 0:764 [C] 1F:74 [ARG] 1A:720 [C]
C:69 [HIS] 0:765 [G] 1F:74 [ARG] 1A:721 [G]
C:69 [HIS] 0:1359 [U] 1F:74 [ARG] 1A:1301 [U]
C:69 [HIS] 0:2101 [A] 1F:74 [ARG] 1A:2082 [A]
C:69 [HIS] 0:2479 [A] 1F:74 [ARG] 1A:2456 [G]
C:218 [VAL] 0:677 [C] 1F:181 [LEU] 1A:641 [G]
C:82 [GLN] 0:641 [G] 1F:82 [ILE] 1A:607 [C]
C:82 [GLN] 0:642 [G] 1F:82 [ILE] 1A:608 [G]
C:82 [GLN] 0:764 [C] 1F:82 [ILE] 1A:720 [C]
C:82 [GLN] 0:1358 [A] 1F:82 [ILE] 1A:1300 [A]
C:82 [GLN] 0:1360 [C] 1F:82 [ILE] 1A:1302 [G]
C:82 [GLN] 0:1361 [C] 1F:82 [ILE] 1A:1303 [C]
C:106 [GLU] 0:656 [G] 1F:105 [VAL] 1A:622 [G]
C:106 [GLU] 0:657 [G] 1F:105 [VAL] 1A:623 [G]
C:57 [PRO] 0:890 [C] 1F:61 [GLY] 1A:844 [C]
C:57 [PRO] 0:891 [G] 1F:61 [GLY] 1A:845 [G]
C:29 [ASP] 0:656 [G] 1F:31 [HIS] 1A:622 [G]
C:70 [VAL] 0:764 [C] 1F:75 [HIS] 1A:720 [C]
C:70 [VAL] 0:1360 [C] 1F:75 [HIS] 1A:1302 [G]
C:70 [VAL] 0:1361 [C] 1F:75 [HIS] 1A:1303 [C]
C:40 [ALA] 0:449 [A] 1F:42 [ALA] 1A:469 [A]
C:105 [LYS] 0:657 [G] 1F:104 [LYS] 1A:623 [G]
C:105 [LYS] 0:658 [C] 1F:104 [LYS] 1A:624 [C]
C:105 [LYS] 0:662 [U] 1F:104 [LYS] 1A:628 [C]
C:105 [LYS] 0:663 [C] 1F:104 [LYS] 1A:629 [U]
C:33 [LYS] 0:656 [G] 1F:35 [GLU] 1A:622 [G]
C:33 [LYS] 0:750 [A] 1F:35 [GLU] 1A:706 [C]
C:33 [LYS] 0:751 [U] 1F:35 [GLU] 1A:707 [G]
C:206 [ASN] 0:327 [A] 1F:169 [ASN] 1A:344 [A]
C:206 [ASN] 0:329 [A] 1F:169 [ASN] 1A:346 [A]
C:206 [ASN] 0:330 [C] 1F:169 [ASN] 1A:347 [G]
C:206 [ASN] 0:331 [A] 1F:169 [ASN] 1A:348 [A]
C:30 [LEU] 0:656 [G] 1F:32 [LEU] 1A:622 [G]
C:30 [LEU] 0:657 [G] 1F:32 [LEU] 1A:623 [G]
C:96 [LYS] 0:646 [G] 1F:95 [ARG] 1A:612 [C]
C:96 [LYS] 0:647 [U] 1F:95 [ARG] 1A:613 [A]
C:96 [LYS] 0:1350 [U] 1F:95 [ARG] 1A:1292 [A]
C:96 [LYS] 0:1351 [G] 1F:95 [ARG] 1A:1293 [A]
C:42 [ARG] 0:449 [A] 1F:44 [ARG] 1A:469 [A]
C:42 [ARG] 0:675 [U] 1F:44 [ARG] 1A:639 [G]
C:67 [GLN] 0:1359 [U] 1F:72 [ARG] 1A:1301 [U]
C:67 [GLN] 0:1361 [C] 1F:72 [ARG] 1A:1303 [C]
C:67 [GLN] 0:2101 [A] 1F:72 [ARG] 1A:2082 [A]
C:56 [THR] 0:474 [C] 1F:60 [SER] 1A:494 [G]
C:56 [THR] 0:475 [G] 1F:60 [SER] 1A:495 [G]
C:56 [THR] 0:891 [G] 1F:60 [SER] 1A:845 [G]
C:207 [LEU] 0:327 [A] 1F:170 [LEU] 1A:344 [A]
C:207 [LEU] 0:330 [C] 1F:170 [LEU] 1A:347 [G]
C:107 [ARG] 0:678 [G] 1F:106 [ARG] 1A:642 [G]
C:101 [ASP] 0:750 [A] 1F:100 [THR] 1A:706 [C]
C:52 [ALA] 0:458 [G] 1F:56 [GLU] 1A:478 [G]
C:51 [TYR] 0:894 [A] 1F:55 [GLY] 1A:848 [G]
C:148 [VAL] 0:328 [U] 1F:134 [GLY] 1A:345 [G]
C:102 [LEU] 0:664 [U] 1F:101 [LEU] 1A:630 [U]
C:102 [LEU] 0:750 [A] 1F:101 [LEU] 1A:706 [C]
C:81 [PRO] 0:642 [G] 1F:81 [PRO] 1A:608 [G]
C:81 [PRO] 0:763 [C] 1F:81 [PRO] 1A:719 [C]
C:81 [PRO] 0:764 [C] 1F:81 [PRO] 1A:720 [C]
C:216 [SER] 0:677 [C] 1F:179 [GLU] 1A:641 [G]
C:48 [SER] 0:34 [C] 1F:51 [THR] 1A:37 [C]
C:48 [SER] 0:456 [G] 1F:51 [THR] 1A:476 [G]
C:48 [SER] 0:457 [U] 1F:51 [THR] 1A:477 [C]
C:48 [SER] 0:1352 [A] 1F:51 [THR] 1A:1294 [G]
C:217 [GLU] 0:676 [C] 1F:180 [GLY] 1A:640 [A]
C:217 [GLU] 0:677 [C] 1F:180 [GLY] 1A:641 [G]
C:39 [GLN] 0:1307 [A] 1F:41 [LEU] 1A:1247 [C]
C:62 [GLY] 0:766 [A] 1F:67 [GLN] 1A:722 [A]
C:62 [GLY] 0:767 [A] 1F:67 [GLN] 1A:723 [A]
C:62 [GLY] 0:1359 [U] 1F:67 [GLN] 1A:1301 [U]
C:63 [SER] 0:2100 [A] 1F:68 [LYS] 1A:2081 [A]
C:63 [SER] 0:2101 [A] 1F:68 [LYS] 1A:2082 [A]
C:63 [SER] 0:2479 [A] 1F:68 [LYS] 1A:2456 [G]
C:203 [ALA] 0:328 [U] 1F:166 [ALA] 1A:345 [G]
C:68 [ALA] 0:1359 [U] 1F:73 [ALA] 1A:1301 [U]
C:68 [ALA] 0:1360 [C] 1F:73 [ALA] 1A:1302 [G]
C:68 [ALA] 0:1361 [C] 1F:73 [ALA] 1A:1303 [C]
C:100 [LEU] 0:750 [A] 1F:99 [TYR] 1A:706 [C]
C:100 [LEU] 0:751 [U] 1F:99 [TYR] 1A:707 [G]
C:54 [LEU] 0:458 [G] 1F:58 [ALA] 1A:478 [G]
C:92 [PRO] 0:1352 [A] 1F:92 [PRO] 1A:1294 [G]
C:78 [ARG] 0:475 [G] 1F:78 [ILE] 1A:495 [G]
C:205 [ARG] 0:328 [U] 1F:168 [ARG] 1A:345 [G]
C:205 [ARG] 0:329 [A] 1F:168 [ARG] 1A:346 [A]
C:205 [ARG] 0:347 [A] 1F:168 [ARG] 1A:364 [A]
C:27 [ARG] 0:656 [G] 1F:29 [ASN] 1A:622 [G]
C:27 [ARG] 0:657 [G] 1F:29 [ASN] 1A:623 [G]
C:47 [GLY] 0:34 [C] 1F:50 [SER] 1A:37 [C]
C:47 [GLY] 0:35 [U] 1F:50 [SER] 1A:38 [A]
C:46 [TYR] 0:35 [U] 1F:48 [THR] 1A:38 [A]
C:46 [TYR] 0:448 [G] 1F:48 [THR] 1A:468 [G]
C:46 [TYR] 0:450 [C] 1F:48 [THR] 1A:470 [C]
C:91 [PRO] 0:1352 [A] 1F:91 [GLY] 1A:1294 [G]
C:65 [ARG] 0:2100 [A] 1F:70 [THR] 1A:2081 [A]
C:65 [ARG] 0:2101 [A] 1F:70 [THR] 1A:2082 [A]
C:225 [PRO] 0:1308 [A] 1F:188 [ARG] 1A:1248 [G]
C:66 [GLY] 0:1359 [U] 1F:71 [GLY] 1A:1301 [U]
C:66 [GLY] 0:2100 [A] 1F:71 [GLY] 1A:2081 [A]
C:66 [GLY] 0:2101 [A] 1F:71 [GLY] 1A:2082 [A]
C:109 [LEU] 0:657 [G] 1F:108 [LYS] 1A:623 [G]
C:109 [LEU] 0:658 [C] 1F:108 [LYS] 1A:624 [C]
C:80 [VAL] 0:764 [C] 1F:80 [ALA] 1A:720 [C]
C:80 [VAL] 0:765 [G] 1F:80 [ALA] 1A:721 [G]
C:103 [ASN] 0:656 [G] 1F:102 [PRO] 1A:622 [G]
C:103 [ASN] 0:663 [C] 1F:102 [PRO] 1A:629 [U]
C:103 [ASN] 0:664 [U] 1F:102 [PRO] 1A:630 [U]
C:103 [ASN] 0:749 [C] 1F:102 [PRO] 1A:705 [C]
C:103 [ASN] 0:750 [A] 1F:102 [PRO] 1A:706 [C]
C:71 [PRO] 0:765 [G] 1F:76 [GLY] 1A:721 [G]
C:104 [ASP] 0:664 [U] 1F:103 [LYS] 1A:630 [U]
C:104 [ASP] 0:680 [G] 1F:103 [LYS] 1A:644 [G]
C:64 [GLY] 0:2100 [A] 1F:69 [HIS] 1A:2081 [A]
C:64 [GLY] 0:2101 [A] 1F:69 [HIS] 1A:2082 [A]
C:208 [ALA] 0:327 [A] 1F:171 [PRO] 1A:344 [A]
C:208 [ALA] 0:330 [C] 1F:171 [PRO] 1A:347 [G]
C:89 [ALA] 0:643 [A] 1F:89 [VAL] 1A:609 [A]
C:89 [ALA] 0:763 [C] 1F:89 [VAL] 1A:719 [C]
C:83 [ALA] 0:1361 [C] 1F:83 [PHE] 1A:1303 [C]
C:86 [GLY] 0:455 [A] 1F:86 [GLY] 1A:475 [A]
C:86 [GLY] 0:456 [G] 1F:86 [GLY] 1A:476 [G]
C:44 [GLN] 0:35 [U] 1F:46 [ARG] 1A:38 [A]
C:44 [GLN] 0:36 [C] 1F:46 [ARG] 1A:39 [C]
C:44 [GLN] 0:447 [A] 1F:46 [ARG] 1A:467 [U]
C:44 [GLN] 0:448 [G] 1F:46 [ARG] 1A:468 [G]
C:44 [GLN] 0:449 [A] 1F:46 [ARG] 1A:469 [A]
C:85 [LYS] 0:476 [A] 1F:85 [GLY] 1A:496 [A] ❌ 4Y4O_1F_1A
C:90 [HIS] 0:643 [A] 1F:90 [PHE] 1A:609 [A] ❌ 4Y4O_1F_1A
C:45 [ASP] 0:36 [C] 1F:47 [GLY] 1A:39 [C] ❌ 4Y4O_1F_1A
C:37 [ALA] 0:675 [U] 1F:39 [TRP] 1A:639 [G] ❌ 4Y4O_1F_1A
C:37 [ALA] 0:676 [C] 1F:39 [TRP] 1A:640 [A] ❌ 4Y4O_1F_1A
C:53 [GLY] 0:457 [U] 1F:57 [VAL] 1A:477 [C] ❌ 4Y4O_1F_1A
C:219 [ASN] 0:672 [G] 1F:182 [ASN] 1A:637 [U] ❌ 4Y4O_1F_1A
C:36 [ARG] 0:1348 [A] 1F:38 [ARG] 1A:1290 [G] ❌ 4Y4O_1F_1A
C:108 [GLN] 0:679 [G] 1F:107 [LYS] 1A:643 [C] ❌ 4Y4O_1F_1A
C:38 [ALA] 0:675 [U] 1F:40 [GLN] 1A:639 [G] ❌ 4Y4O_1F_1A
C:151 [GLN] 0:326 [G] 1F:137 [LYS] 1A:343 [C] ❌ 4Y4O_1F_1A
C:221 [GLU] 0:675 [U] 1F:184 [TYR] 1A:639 [G] ❌ 4Y4O_1F_1A
C:55 [ARG] 0:457 [U] 1F:59 [TYR] 1A:477 [C] ❌ 4Y4O_1F_1A
C:69 [HIS] 0:766 [A] 1F:74 [ARG] 1A:722 [A] ❌ 4Y4O_1F_1A
C:218 [VAL] 0:672 [G] 1F:181 [LEU] 1A:637 [U] ❌ 4Y4O_1F_1A
C:72 [LYS] 0:1361 [C] 1F:77 [ASP] 1A:1303 [C] ❌ 4Y4O_1F_1A
C:72 [LYS] 0:1362 [U] 1F:77 [ASP] 1A:1304 [C] ❌ 4Y4O_1F_1A
C:82 [GLN] 0:763 [C] 1F:82 [ILE] 1A:719 [C] ❌ 4Y4O_1F_1A
C:57 [PRO] 0:474 [C] 1F:61 [GLY] 1A:494 [G] ❌ 4Y4O_1F_1A
C:57 [PRO] 0:475 [G] 1F:61 [GLY] 1A:495 [G] ❌ 4Y4O_1F_1A
C:105 [LYS] 0:664 [U] 1F:104 [LYS] 1A:630 [U] ❌ 4Y4O_1F_1A
C:206 [ASN] 0:326 [G] 1F:169 [ASN] 1A:343 [C] ❌ 4Y4O_1F_1A
C:41 [ASN] 0:675 [U] 1F:43 [LYS] 1A:639 [G] ❌ 4Y4O_1F_1A
C:41 [ASN] 0:676 [C] 1F:43 [LYS] 1A:640 [A] ❌ 4Y4O_1F_1A
C:214 [THR] 0:672 [G] 1F:177 [ALA] 1A:637 [U] ❌ 4Y4O_1F_1A
C:107 [ARG] 0:676 [C] 1F:106 [ARG] 1A:640 [A] ❌ 4Y4O_1F_1A
C:107 [ARG] 0:677 [C] 1F:106 [ARG] 1A:641 [G] ❌ 4Y4O_1F_1A
C:101 [ASP] 0:751 [U] 1F:100 [THR] 1A:707 [G] ❌ 4Y4O_1F_1A
C:52 [ALA] 0:457 [U] 1F:56 [GLU] 1A:477 [C] ❌ 4Y4O_1F_1A
C:51 [TYR] 0:458 [G] 1F:55 [GLY] 1A:478 [G] ❌ 4Y4O_1F_1A
C:48 [SER] 0:35 [U] 1F:51 [THR] 1A:38 [A] ❌ 4Y4O_1F_1A
C:217 [GLU] 0:672 [G] 1F:180 [GLY] 1A:637 [U] ❌ 4Y4O_1F_1A
C:61 [PHE] 0:766 [A] 1F:66 [PRO] 1A:722 [A] ❌ 4Y4O_1F_1A
C:61 [PHE] 0:767 [A] 1F:66 [PRO] 1A:723 [A] ❌ 4Y4O_1F_1A
C:39 [GLN] 0:675 [U] 1F:41 [LEU] 1A:639 [G] ❌ 4Y4O_1F_1A
C:63 [SER] 0:767 [A] 1F:68 [LYS] 1A:723 [A] ❌ 4Y4O_1F_1A
C:63 [SER] 0:1359 [U] 1F:68 [LYS] 1A:1301 [U] ❌ 4Y4O_1F_1A
C:100 [LEU] 0:752 [G] 1F:99 [TYR] 1A:708 [C] ❌ 4Y4O_1F_1A
C:54 [LEU] 0:894 [A] 1F:58 [ALA] 1A:848 [G] ❌ 4Y4O_1F_1A
C:222 [ASP] 0:672 [G] 1F:185 [ASP] 1A:637 [U] ❌ 4Y4O_1F_1A
C:92 [PRO] 0:450 [C] 1F:92 [PRO] 1A:470 [C] ❌ 4Y4O_1F_1A
C:78 [ARG] 0:476 [A] 1F:78 [ILE] 1A:496 [A] ❌ 4Y4O_1F_1A
C:213 [ALA] 0:672 [G] 1F:176 [LEU] 1A:637 [U] ❌ 4Y4O_1F_1A
C:46 [TYR] 0:1351 [G] 1F:48 [THR] 1A:1293 [A] ❌ 4Y4O_1F_1A
C:46 [TYR] 0:1352 [A] 1F:48 [THR] 1A:1294 [G] ❌ 4Y4O_1F_1A
C:91 [PRO] 0:645 [U] 1F:91 [GLY] 1A:611 [U] ❌ 4Y4O_1F_1A
C:50 [GLU] 0:35 [U] 1F:53 [THR] 1A:38 [A] ❌ 4Y4O_1F_1A
C:103 [ASN] 0:657 [G] 1F:102 [PRO] 1A:623 [G] ❌ 4Y4O_1F_1A
C:71 [PRO] 0:764 [C] 1F:76 [GLY] 1A:720 [C] ❌ 4Y4O_1F_1A
C:104 [ASP] 0:663 [C] 1F:103 [LYS] 1A:629 [U] ❌ 4Y4O_1F_1A
C:104 [ASP] 0:678 [G] 1F:103 [LYS] 1A:642 [G] ❌ 4Y4O_1F_1A
C:64 [GLY] 0:1359 [U] 1F:69 [HIS] 1A:1301 [U] ❌ 4Y4O_1F_1A
C:89 [ALA] 0:894 [A] 1F:89 [VAL] 1A:848 [G] ❌ 4Y4O_1F_1A
C:83 [ALA] 0:455 [A] 1F:83 [PHE] 1A:475 [A] ❌ 4Y4O_1F_1A
C:101 [ASP] 0:749 [C] 1F:100 [THR] 1A:705 [C] ❌ 1YHQ_C_0
C:101 [ASP] 0:664 [U] 1F:100 [THR] 1A:630 [U] ❌ 1YHQ_C_0
C:104 [ASP] 0:679 [G] 1F:103 [LYS] 1A:643 [C] ❌ 1YHQ_C_0
C:107 [ARG] 0:664 [U] 1F:106 [ARG] 1A:630 [U] ❌ 1YHQ_C_0
C:213 [ALA] 0:676 [C] 1F:176 [LEU] 1A:640 [A] ❌ 1YHQ_C_0
C:214 [THR] 0:676 [C] 1F:177 [ALA] 1A:640 [A] ❌ 1YHQ_C_0
C:216 [SER] 0:676 [C] 1F:179 [GLU] 1A:640 [A] ❌ 1YHQ_C_0
C:221 [GLU] 0:1307 [A] 1F:184 [TYR] 1A:1247 [C] ❌ 1YHQ_C_0
C:221 [GLU] 0:1308 [A] 1F:184 [TYR] 1A:1248 [G] ❌ 1YHQ_C_0
C:222 [ASP] 0:676 [C] 1F:185 [ASP] 1A:640 [A] ❌ 1YHQ_C_0
C:36 [ARG] 0:1350 [U] 1F:38 [ARG] 1A:1292 [A] ❌ 1YHQ_C_0
C:36 [ARG] 0:751 [U] 1F:38 [ARG] 1A:707 [G] ❌ 1YHQ_C_0
C:36 [ARG] 0:449 [A] 1F:38 [ARG] 1A:469 [A] ❌ 1YHQ_C_0
C:36 [ARG] 0:752 [G] 1F:38 [ARG] 1A:708 [C] ❌ 1YHQ_C_0
C:37 [ALA] 0:677 [C] 1F:39 [TRP] 1A:641 [G] ❌ 1YHQ_C_0
C:37 [ALA] 0:678 [G] 1F:39 [TRP] 1A:642 [G] ❌ 1YHQ_C_0
C:38 [ALA] 0:677 [C] 1F:40 [GLN] 1A:641 [G] ❌ 1YHQ_C_0
C:39 [GLN] 0:449 [A] 1F:41 [LEU] 1A:469 [A] ❌ 1YHQ_C_0
C:41 [ASN] 0:677 [C] 1F:43 [LYS] 1A:641 [G] ❌ 1YHQ_C_0
C:42 [ARG] 0:1307 [A] 1F:44 [ARG] 1A:1247 [C] ❌ 1YHQ_C_0
C:43 [LYS] 0:1350 [U] 1F:45 [ARG] 1A:1292 [A] ❌ 1YHQ_C_0
C:43 [LYS] 0:450 [C] 1F:45 [ARG] 1A:470 [C] ❌ 1YHQ_C_0
C:43 [LYS] 0:675 [U] 1F:45 [ARG] 1A:639 [G] ❌ 1YHQ_C_0
C:44 [GLN] 0:675 [U] 1F:46 [ARG] 1A:639 [G] ❌ 1YHQ_C_0
C:45 [ASP] 0:449 [A] 1F:47 [GLY] 1A:469 [A] ❌ 1YHQ_C_0
C:45 [ASP] 0:450 [C] 1F:47 [GLY] 1A:470 [C] ❌ 1YHQ_C_0
C:46 [TYR] 0:34 [C] 1F:48 [THR] 1A:37 [C] ❌ 1YHQ_C_0
C:46 [TYR] 0:36 [C] 1F:48 [THR] 1A:39 [C] ❌ 1YHQ_C_0
C:47 [GLY] 0:457 [U] 1F:50 [SER] 1A:477 [C] ❌ 1YHQ_C_0
C:47 [GLY] 0:456 [G] 1F:50 [SER] 1A:476 [G] ❌ 1YHQ_C_0
C:47 [GLY] 0:450 [C] 1F:50 [SER] 1A:470 [C] ❌ 1YHQ_C_0
C:47 [GLY] 0:1352 [A] 1F:50 [SER] 1A:1294 [G] ❌ 1YHQ_C_0
C:49 [ASP] 0:458 [G] 1F:52 [LYS] 1A:478 [G] ❌ 1YHQ_C_0
C:50 [GLU] 0:760 [G] 1F:53 [THR] 1A:716 [G] ❌ 1YHQ_C_0
C:50 [GLU] 0:894 [A] 1F:53 [THR] 1A:848 [G] ❌ 1YHQ_C_0
C:54 [LEU] 0:475 [G] 1F:58 [ALA] 1A:495 [G] ❌ 1YHQ_C_0
C:54 [LEU] 0:457 [U] 1F:58 [ALA] 1A:477 [C] ❌ 1YHQ_C_0
C:55 [ARG] 0:476 [A] 1F:59 [TYR] 1A:496 [A] ❌ 1YHQ_C_0
C:55 [ARG] 0:891 [G] 1F:59 [TYR] 1A:845 [G] ❌ 1YHQ_C_0
C:56 [THR] 0:890 [C] 1F:60 [SER] 1A:844 [C] ❌ 1YHQ_C_0
C:62 [GLY] 0:765 [G] 1F:67 [GLN] 1A:721 [G] ❌ 1YHQ_C_0
C:62 [GLY] 0:2479 [A] 1F:67 [GLN] 1A:2456 [G] ❌ 1YHQ_C_0
C:62 [GLY] 0:2101 [A] 1F:67 [GLN] 1A:2082 [A] ❌ 1YHQ_C_0
C:67 [GLN] 0:1362 [U] 1F:72 [ARG] 1A:1304 [C] ❌ 1YHQ_C_0
C:67 [GLN] 0:1360 [C] 1F:72 [ARG] 1A:1302 [G] ❌ 1YHQ_C_0
C:70 [VAL] 0:765 [G] 1F:75 [HIS] 1A:721 [G] ❌ 1YHQ_C_0
C:70 [VAL] 0:766 [A] 1F:75 [HIS] 1A:722 [A] ❌ 1YHQ_C_0
C:71 [PRO] 0:766 [A] 1F:76 [GLY] 1A:722 [A] ❌ 1YHQ_C_0
C:72 [LYS] 0:765 [G] 1F:77 [ASP] 1A:721 [G] ❌ 1YHQ_C_0
C:81 [PRO] 0:641 [G] 1F:81 [PRO] 1A:607 [C] ❌ 1YHQ_C_0
C:83 [ALA] 0:641 [G] 1F:83 [PHE] 1A:607 [C] ❌ 1YHQ_C_0
C:83 [ALA] 0:1362 [U] 1F:83 [PHE] 1A:1304 [C] ❌ 1YHQ_C_0
C:84 [VAL] 0:641 [G] 1F:84 [VAL] 1A:607 [C] ❌ 1YHQ_C_0
C:89 [ALA] 0:762 [C] 1F:89 [VAL] 1A:718 [C] ❌ 1YHQ_C_0
C:90 [HIS] 0:761 [A] 1F:90 [PHE] 1A:717 [A] ❌ 1YHQ_C_0
C:90 [HIS] 0:760 [G] 1F:90 [PHE] 1A:716 [G] ❌ 1YHQ_C_0
C:85 [LYS] 0:459 [A] 1F:85 [GLY] 1A:479 [C] ❌ 4Y4O_1A:479 no longer at interface
C:85 [LYS] 0:477 [A] 1F:85 [GLY] 1A:497 [A] ❌ 4Y4O_1A:497 no longer at interface
C:43 [LYS] 0:1306 [U] 1F:45 [ARG] 1A:1246 [C] ❌ 4Y4O_1A:1246 no longer at interface
C:51 [TYR] 0:892 [G] 1F:55 [GLY] 1A:846 [G] ❌ 4Y4O_1A:846 no longer at interface
C:217 [GLU] 0:670 [G] 1F:180 [GLY] 1A:636 [G] ❌ 4Y4O_1A:636 no longer at interface
C:78 [ARG] 0:477 [A] 1F:78 [ILE] 1A:497 [A] ❌ 4Y4O_1A:497 no longer at interface
C:205 [ARG] 0:348 [C] 1F:168 [ARG] 1A:365 [G] ❌ 4Y4O_1A:365 no longer at interface
C:101 [ASP] 0:665 [A] 1F:100 [THR] 1A:631 [A] ❌ 1YHQ_0:665 no longer at interface
C:104 [ASP] 0:681 [G] 1F:103 [LYS] 1A:645 [G] ❌ 1YHQ_0:681 no longer at interface
C:29 [ASP] 0:655 [U] 1F:31 [HIS] 1A:621 [G] ❌ 1YHQ_0:655 no longer at interface
C:33 [LYS] 0:655 [U] 1F:35 [GLU] 1A:621 [G] ❌ 1YHQ_0:655 no longer at interface
C:44 [GLN] 0:446 [G] 1F:46 [ARG] 1A:466 [G] ❌ 1YHQ_0:446 no longer at interface
C:54 [LEU] 0:464 [G] 1F:58 [ALA] 1A:484 [G] ❌ 1YHQ_0:464 no longer at interface
C:56 [THR] 0:889 [C] 1F:60 [SER] 1A:843 [C] ❌ 1YHQ_0:889 no longer at interface
C:58 [ALA] 0:889 [C] 1F:62 [ARG] 1A:843 [C] ❌ 1YHQ_C:58, 1YHQ_0:889 no longer at interface
C:61 [PHE] 0:883 [U] 1F:66 [PRO] 1A:837 [C] ❌ 1YHQ_0:883 no longer at interface
C:62 [GLY] 0:2478 [U] 1F:67 [GLN] 1A:2455 [C] ❌ 1YHQ_0:2478 no longer at interface
C:63 [SER] 0:2102 [G] 1F:68 [LYS] 1A:2083 [G] ❌ 1YHQ_0:2102 no longer at interface
C:63 [SER] 0:2103 [A] 1F:68 [LYS] 1A:2084 [A] ❌ 1YHQ_0:2103 no longer at interface
C:63 [SER] 0:2478 [U] 1F:68 [LYS] 1A:2455 [C] ❌ 1YHQ_0:2478 no longer at interface
C:64 [GLY] 0:2478 [U] 1F:69 [HIS] 1A:2455 [C] ❌ 1YHQ_0:2478 no longer at interface
C:64 [GLY] 0:2103 [A] 1F:69 [HIS] 1A:2084 [A] ❌ 1YHQ_0:2103 no longer at interface
C:69 [HIS] 0:900 [U] 1F:74 [ARG] 1A:854 [U] ❌ 1YHQ_0:900 no longer at interface
C:69 [HIS] 0:2480 [G] 1F:74 [ARG] 1A:2457 [G] ❌ 1YHQ_0:2480 no longer at interface
C:209 [GLY] 0:330 [C] 1F:172 [TRP] 1A:347 [G] ❌ 4Y4O_1F:172 no longer at interface
C:87 [ARG] 0:763 [C] 1F:87 [GLY] 1A:719 [C] ❌ 4Y4O_1F:87 no longer at interface
C:87 [ARG] 0:764 [C] 1F:87 [GLY] 1A:720 [C] ❌ 4Y4O_1F:87 no longer at interface
C:87 [ARG] 0:894 [A] 1F:87 [GLY] 1A:848 [G] ❌ 4Y4O_1F:87 no longer at interface
C:93 [LYS] 0:645 [U] 1F:93 [LYS] 1A:611 [U] ❌ 4Y4O_1F:93 no longer at interface
C:93 [LYS] 0:646 [G] 1F:93 [LYS] 1A:612 [C] ❌ 4Y4O_1F:93 no longer at interface
C:93 [LYS] 0:760 [G] 1F:93 [LYS] 1A:716 [G] ❌ 4Y4O_1F:93 no longer at interface
C:93 [LYS] 0:761 [A] 1F:93 [LYS] 1A:717 [A] ❌ 4Y4O_1F:93 no longer at interface
C:60 [SER] 0:765 [G] 1F:64 [ILE] 1A:721 [G] ❌ 4Y4O_1F:64 no longer at interface
C:60 [SER] 0:766 [A] 1F:64 [ILE] 1A:722 [A] ❌ 4Y4O_1F:64 no longer at interface
C:60 [SER] 0:767 [A] 1F:64 [ILE] 1A:723 [A] ❌ 4Y4O_1F:64 no longer at interface
C:97 [ASP] 0:646 [G] 1F:96 [ASP] 1A:612 [C] ❌ 4Y4O_1F:96 no longer at interface
C:97 [ASP] 0:647 [U] 1F:96 [ASP] 1A:613 [A] ❌ 4Y4O_1F:96 no longer at interface
C:200 [PRO] 0:672 [G] 1F:163 [VAL] 1A:637 [U] ❌ 4Y4O_1F:163 no longer at interface
C:212 [VAL] 0:672 [G] 1F:175 [THR] 1A:637 [U] ❌ 4Y4O_1F:175 no longer at interface
C:79 [ARG] 0:894 [A] 1F:79 [GLY] 1A:848 [G] ❌ 4Y4O_1F:79 no longer at interface
C:99 [SER] 0:751 [U] 1F:98 [SER] 1A:707 [G] ❌ 4Y4O_1F:98 no longer at interface
C:111 [VAL] 0:677 [C] 1F:110 [LEU] 1A:641 [G] ❌ 4Y4O_1F:110 no longer at interface
C:32 [GLY] 0:751 [U] 1F:34 [TRP] 1A:707 [G] ❌ 1YHQ_C:32 no longer at interface
C:32 [GLY] 0:1349 [G] 1F:34 [TRP] 1A:1291 [G] ❌ 1YHQ_C:32 no longer at interface
C:32 [GLY] 0:1348 [A] 1F:34 [TRP] 1A:1290 [G] ❌ 1YHQ_C:32 no longer at interface
C:58 [ALA] 0:474 [C] 1F:62 [ARG] 1A:494 [G] ❌ 1YHQ_C:58 no longer at interface
C:58 [ALA] 0:891 [G] 1F:62 [ARG] 1A:845 [G] ❌ 1YHQ_C:58 no longer at interface
C:58 [ALA] 0:890 [C] 1F:62 [ARG] 1A:844 [C] ❌ 1YHQ_C:58 no longer at interface
C:59 [GLU] 0:765 [G] 1F:63 [LYS] 1A:721 [G] ❌ 1YHQ_C:59 no longer at interface
C:59 [GLU] 0:766 [A] 1F:63 [LYS] 1A:722 [A] ❌ 1YHQ_C:59 no longer at interface
C:59 [GLU] 0:767 [A] 1F:63 [LYS] 1A:723 [A] ❌ 1YHQ_C:59 no longer at interface
C:98 [ARG] 0:1351 [G] 1F:97 [TYR] 1A:1293 [A] ❌ 1YHQ_C:98 no longer at interface
C:98 [ARG] 0:1350 [U] 1F:97 [TYR] 1A:1292 [A] ❌ 1YHQ_C:98 no longer at interface
C:98 [ARG] 0:450 [C] 1F:97 [TYR] 1A:470 [C] ❌ 1YHQ_C:98 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
Common RFAM label(s)
Interface TM-score
Interface RMSD
Percentage identity
Protein TM-score
RNA TM-score
Protein coverage
RNA coverage
Percentage conservation
Apolar conservation
H-bond conservation
Percentage switching out
Ribosomal protein L4 0.92 2.09 0.24 0.82 0.93 0.91 0.84 0.65 0.62 0.25 0.33


Other pairs involving 1YHQ_C_0 or 4Y4O_1F_1A

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
Interface TM-score
Interface RMSD
Percentage identity
Common ECOD label(s)
Common RFAM label(s)
Explore both interfaces
1VQ8_C_0 1YHQ_C_0 0.99 1.0 0.17 1.0 Ribosomal protein L4 Archaeal large subunit ribosomal RNA compare
1YHQ_C_0 3CC2_C_0 0.99 1.0 0.13 0.99 Ribosomal protein L4 Archaeal large subunit ribosomal RNA compare
1VQ8_C_0 4Y4O_1F_1A 0.65 0.92 2.06 0.24 Ribosomal protein L4 compare
1YHQ_C_0 4Y4O_1F_1A 0.65 0.92 2.09 0.24 Ribosomal protein L4 compare
3CC2_C_0 4Y4O_1F_1A 0.66 0.92 2.07 0.24 Ribosomal protein L4 compare
4Y4O_1F_1A 6AZ3_C_1,7 0.58 0.63 2.26 0.16 compare
1YHQ_C_0 6AZ3_C_1,7 0.72 0.69 1.45 0.3 compare
4Y4O_1F_1A 6S0Z_E_A 0.78 0.97 1.43 0.53 Ribosomal protein L4 Bacterial large subunit ribosomal RNA compare
1YHQ_C_0 6S0Z_E_A 0.68 0.92 2.18 0.2 Ribosomal protein L4 compare
4Y4O_1F_1A 7K00_e_a 0.77 0.96 1.16 0.47 Ribosomal protein L4 Bacterial large subunit ribosomal RNA compare
1YHQ_C_0 7K00_e_a 0.65 0.91 2.39 0.2 Ribosomal protein L4 compare
4Y4O_1F_1A 7O7Y_BC_B5,B8 0.58 0.9 2.36 0.2 Ribosomal protein L4 compare
1YHQ_C_0 7O7Y_BC_B5,B8 0.73 0.94 1.36 0.3 Ribosomal protein L4 compare
4Y4O_1F_1A 7OF0_F_A 0.80 0.94 1.15 0.47 Ribosomal protein L4 Bacterial large subunit ribosomal RNA compare
1YHQ_C_0 7OF0_F_A 0.58 0.93 2.5 0.21 Ribosomal protein L4 compare
4Y4O_1F_1A 7RYG_E_A 0.74 0.96 1.8 0.47 Ribosomal protein L4 Bacterial large subunit ribosomal RNA compare
1YHQ_C_0 7RYG_E_A 0.62 0.92 2.45 0.22 Ribosomal protein L4 compare