Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
4Y4O_1F
|
4Y4O_1A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
1F:29 [ASN] | 1A:622 [G] | 3.32 | 1A:705 [C] | 0.0 | ||
1F:29 [ASN] | 1A:623 [G] | 3.36 | 1A:704 [U] | 0.0 | ||
1F:31 [HIS] | 1A:621 [G] | 3.15 | 1A:706 [C] | 43.05 | ||
1F:31 [HIS] | 1A:622 [G] | 3.64 | 1A:705 [C] | 43.05 | ||
1F:32 [LEU] | 1A:622 [G] | 4.17 | 1A:705 [C] | 69.61 | ||
1F:32 [LEU] | 1A:623 [G] | 3.66 | 1A:704 [U] | 69.61 | ||
1F:34 [TRP] | 1A:707 [G] | 4.67 | 1A:620 [U] | 66.23 | ||
1F:34 [TRP] | 1A:1290 [G] | 3.14 | 1A:1246 [C] | sugar:SC | 66.23 | |
1F:34 [TRP] | 1A:1291 [G] | 3.74 | 1A:1245 [C] | 66.23 | ||
1F:35 [GLU] | 1A:621 [G] | 2.76 | 1A:706 [C] | base:SC | 69.47 | |
1F:35 [GLU] | 1A:622 [G] | 4.64 | 1A:705 [C] | 69.47 | ||
1F:35 [GLU] | 1A:706 [C] | 4.31 | 1A:621 [G] | 69.47 | ||
1F:35 [GLU] | 1A:707 [G] | 4.51 | 1A:620 [U] | 69.47 | ||
1F:38 [ARG] | 1A:469 [A] | 4.98 | 57.01 | |||
1F:38 [ARG] | 1A:707 [G] | 2.69 | 1A:620 [U] | 57.01 | ||
1F:38 [ARG] | 1A:708 [C] | 3.26 | 1A:619 [G] | 57.01 | ||
1F:38 [ARG] | 1A:1291 [G] | 3.62 | 1A:1245 [C] | 57.01 | ||
1F:38 [ARG] | 1A:1292 [A] | 2.62 | 1A:1244 [U] | 57.01 | ||
1F:39 [TRP] | 1A:641 [G] | 4.12 | 1A:635 [C] | 60.4 | ||
1F:39 [TRP] | 1A:642 [G] | 3.39 | 1A:634 [C] | 60.4 | ||
1F:40 [GLN] | 1A:640 [A] | 4.5 | 1A:636 [G] | 67.92 | ||
1F:40 [GLN] | 1A:641 [G] | 2.67 | 1A:635 [C] | 67.92 | ||
1F:41 [LEU] | 1A:469 [A] | 2.93 | base:BB | 64.29 | ||
1F:41 [LEU] | 1A:1247 [C] | 4.56 | 1A:1289 [G] | 64.29 | ||
1F:42 [ALA] | 1A:469 [A] | 3.63 | 79.18 | |||
1F:43 [LYS] | 1A:641 [G] | 2.59 | 1A:635 [C] | 85.02 | ||
1F:44 [ARG] | 1A:469 [A] | 4.36 | 65.6 | |||
1F:44 [ARG] | 1A:639 [G] | 2.79 | base:BB | base/AA stacks | 65.6 | |
1F:44 [ARG] | 1A:1247 [C] | 4.36 | 1A:1289 [G] | 65.6 | ||
1F:45 [ARG] | 1A:469 [A] | 3.2 | base/AA stacks | 94.83 | ||
1F:45 [ARG] | 1A:470 [C] | 3.0 | 1A:36 [G] | 94.83 | ||
1F:45 [ARG] | 1A:639 [G] | 4.18 | 94.83 | |||
1F:45 [ARG] | 1A:1292 [A] | 2.86 | 1A:1244 [U] | sugar:SC | 94.83 | |
1F:46 [ARG] | 1A:38 [A] | 4.24 | 1A:467 [U] | 65.33 | ||
1F:46 [ARG] | 1A:39 [C] | 2.68 | 1A:466 [G] | base:SC, sugar:SC | 65.33 | |
1F:46 [ARG] | 1A:466 [G] | 3.55 | 1A:39 [C] | 65.33 | ||
1F:46 [ARG] | 1A:467 [U] | 2.92 | 1A:38 [A] | base:SC, sugar:SC | 65.33 | |
1F:46 [ARG] | 1A:468 [G] | 3.49 | 1A:37 [C] | 65.33 | ||
1F:46 [ARG] | 1A:469 [A] | 2.78 | 65.33 | |||
1F:46 [ARG] | 1A:639 [G] | 3.94 | 65.33 | |||
1F:47 [GLY] | 1A:38 [A] | 4.35 | 1A:467 [U] | 80.47 | ||
1F:47 [GLY] | 1A:469 [A] | 4.33 | 80.47 | |||
1F:47 [GLY] | 1A:470 [C] | 4.66 | 1A:36 [G] | 80.47 | ||
1F:48 [THR] | 1A:37 [C] | 4.32 | 1A:468 [G] | 86.2 | ||
1F:48 [THR] | 1A:38 [A] | 3.36 | 1A:467 [U] | 86.2 | ||
1F:48 [THR] | 1A:39 [C] | 4.1 | 1A:466 [G] | 86.2 | ||
1F:48 [THR] | 1A:468 [G] | 2.74 | 1A:37 [C] | base:BB, base:SC | 86.2 | |
1F:48 [THR] | 1A:470 [C] | 4.24 | 1A:36 [G] | 86.2 | ||
1F:49 [ALA] | 1A:38 [A] | 4.9 | 1A:467 [U] | 82.75 | ||
1F:49 [ALA] | 1A:468 [G] | 4.82 | 1A:37 [C] | 82.75 | ||
1F:49 [ALA] | 1A:470 [C] | 3.5 | 1A:36 [G] | 82.75 | ||
1F:50 [SER] | 1A:37 [C] | 3.54 | 1A:468 [G] | 77.04 | ||
1F:50 [SER] | 1A:38 [A] | 3.56 | 1A:467 [U] | 77.04 | ||
1F:50 [SER] | 1A:470 [C] | 4.3 | 1A:36 [G] | 77.04 | ||
1F:50 [SER] | 1A:476 [G] | 4.83 | 77.04 | |||
1F:50 [SER] | 1A:477 [C] | 4.53 | 77.04 | |||
1F:50 [SER] | 1A:1294 [G] | 4.4 | 77.04 | |||
1F:51 [THR] | 1A:37 [C] | 4.95 | 1A:468 [G] | 87.42 | ||
1F:51 [THR] | 1A:476 [G] | 3.91 | 87.42 | |||
1F:51 [THR] | 1A:477 [C] | 4.35 | 87.42 | |||
1F:51 [THR] | 1A:1294 [G] | 3.33 | 87.42 | |||
1F:52 [LYS] | 1A:37 [C] | 3.85 | 1A:468 [G] | 92.83 | ||
1F:52 [LYS] | 1A:38 [A] | 4.4 | 1A:467 [U] | 92.83 | ||
1F:52 [LYS] | 1A:477 [C] | 3.21 | 92.83 | |||
1F:52 [LYS] | 1A:478 [G] | 4.16 | 92.83 | |||
1F:53 [THR] | 1A:716 [G] | 4.44 | 78.25 | |||
1F:53 [THR] | 1A:848 [G] | 2.78 | base:SC | 78.25 | ||
1F:54 [ARG] | 1A:720 [C] | 2.86 | 1A:854 [U] | 94.06 | ||
1F:54 [ARG] | 1A:721 [G] | 2.79 | 1A:853 [C] | 94.06 | ||
1F:54 [ARG] | 1A:848 [G] | 3.2 | base/AA stacks | 94.06 | ||
1F:55 [GLY] | 1A:848 [G] | 3.28 | 71.55 | |||
1F:56 [GLU] | 1A:478 [G] | 4.54 | 78.09 | |||
1F:57 [VAL] | 1A:478 [G] | 3.15 | 95.94 | |||
1F:58 [ALA] | 1A:477 [C] | 4.95 | 68.33 | |||
1F:58 [ALA] | 1A:478 [G] | 2.69 | 68.33 | |||
1F:58 [ALA] | 1A:484 [G] | 4.23 | 68.33 | |||
1F:58 [ALA] | 1A:495 [G] | 4.41 | 1A:486 [A] | 68.33 | ||
1F:59 [TYR] | 1A:478 [G] | 3.26 | 79.84 | |||
1F:59 [TYR] | 1A:495 [G] | 3.33 | 1A:486 [A] | 79.84 | ||
1F:59 [TYR] | 1A:496 [A] | 3.37 | 1A:485 [U] | 79.84 | ||
1F:59 [TYR] | 1A:845 [G] | 4.1 | 1A:726 [C] | 79.84 | ||
1F:60 [SER] | 1A:494 [G] | 3.68 | 1A:487 [C] | 87.69 | ||
1F:60 [SER] | 1A:495 [G] | 2.87 | 1A:486 [A] | 87.69 | ||
1F:60 [SER] | 1A:843 [C] | 4.91 | 1A:728 [G] | 87.69 | ||
1F:60 [SER] | 1A:844 [C] | 2.57 | 1A:727 [G] | 87.69 | ||
1F:60 [SER] | 1A:845 [G] | 3.93 | 1A:726 [C] | 87.69 | ||
1F:61 [GLY] | 1A:844 [C] | 4.82 | 1A:727 [G] | 76.76 | ||
1F:61 [GLY] | 1A:845 [G] | 2.93 | 1A:726 [C] | 76.76 | ||
1F:62 [ARG] | 1A:494 [G] | 3.48 | 1A:487 [C] | 73.92 | ||
1F:62 [ARG] | 1A:843 [C] | 3.7 | 1A:728 [G] | 73.92 | ||
1F:62 [ARG] | 1A:844 [C] | 3.42 | 1A:727 [G] | 73.92 | ||
1F:62 [ARG] | 1A:845 [G] | 4.7 | 1A:726 [C] | 73.92 | ||
1F:63 [LYS] | 1A:721 [G] | 3.32 | 1A:853 [C] | 98.89 | ||
1F:63 [LYS] | 1A:722 [A] | 2.75 | 1A:850 [U] | 98.89 | ||
1F:63 [LYS] | 1A:723 [A] | 3.42 | 1A:849 [A] | 98.89 | ||
1F:65 [TRP] | 1A:1303 [C] | 4.17 | 1A:606 [G] | 43.83 | ||
1F:66 [PRO] | 1A:837 [C] | 3.72 | 80.62 | |||
1F:67 [GLN] | 1A:721 [G] | 2.9 | 1A:853 [C] | sugar:SC, sugar:SC | 99.0 | |
1F:67 [GLN] | 1A:722 [A] | 3.08 | 1A:850 [U] | 99.0 | ||
1F:67 [GLN] | 1A:723 [A] | 4.39 | 1A:849 [A] | 99.0 | ||
1F:67 [GLN] | 1A:1301 [U] | 4.36 | 99.0 | |||
1F:67 [GLN] | 1A:2082 [A] | 4.93 | 99.0 | |||
1F:67 [GLN] | 1A:2455 [C] | 3.82 | 1A:2089 [G] | 99.0 | ||
1F:67 [GLN] | 1A:2456 [G] | 3.1 | 1A:2088 [C] | 99.0 | ||
1F:68 [LYS] | 1A:2081 [A] | 4.99 | 98.98 | |||
1F:68 [LYS] | 1A:2082 [A] | 3.3 | sugar:SC | 98.98 | ||
1F:68 [LYS] | 1A:2083 [G] | 2.85 | 1A:2463 [A] | 98.98 | ||
1F:68 [LYS] | 1A:2084 [A] | 4.92 | 98.98 | |||
1F:68 [LYS] | 1A:2455 [C] | 3.07 | 1A:2089 [G] | 98.98 | ||
1F:68 [LYS] | 1A:2456 [G] | 2.85 | 1A:2088 [C] | 98.98 | ||
1F:69 [HIS] | 1A:2081 [A] | 2.84 | 87.55 | |||
1F:69 [HIS] | 1A:2082 [A] | 2.74 | 87.55 | |||
1F:69 [HIS] | 1A:2084 [A] | 3.99 | 87.55 | |||
1F:69 [HIS] | 1A:2455 [C] | 4.0 | 1A:2089 [G] | 87.55 | ||
1F:70 [THR] | 1A:2081 [A] | 4.34 | 96.27 | |||
1F:70 [THR] | 1A:2082 [A] | 4.39 | 96.27 | |||
1F:71 [GLY] | 1A:1301 [U] | 3.45 | 98.93 | |||
1F:71 [GLY] | 1A:2081 [A] | 3.26 | 98.93 | |||
1F:71 [GLY] | 1A:2082 [A] | 3.34 | 98.93 | |||
1F:72 [ARG] | 1A:1301 [U] | 3.03 | 84.66 | |||
1F:72 [ARG] | 1A:1302 [G] | 4.96 | 1A:607 [C] | 84.66 | ||
1F:72 [ARG] | 1A:1303 [C] | 3.05 | 1A:606 [G] | 84.66 | ||
1F:72 [ARG] | 1A:1304 [C] | 3.52 | 1A:605 [G] | 84.66 | ||
1F:72 [ARG] | 1A:2082 [A] | 4.57 | 84.66 | |||
1F:73 [ALA] | 1A:1301 [U] | 3.69 | 98.3 | |||
1F:73 [ALA] | 1A:1302 [G] | 3.48 | 1A:607 [C] | 98.3 | ||
1F:73 [ALA] | 1A:1303 [C] | 3.94 | 1A:606 [G] | 98.3 | ||
1F:74 [ARG] | 1A:720 [C] | 4.65 | 1A:854 [U] | 99.0 | ||
1F:74 [ARG] | 1A:721 [G] | 3.15 | 1A:853 [C] | base/AA stacks | 99.0 | |
1F:74 [ARG] | 1A:854 [U] | 3.3 | 1A:720 [C] | base:SC | 99.0 | |
1F:74 [ARG] | 1A:1301 [U] | 4.17 | 99.0 | |||
1F:74 [ARG] | 1A:2082 [A] | 3.7 | base/AA stacks | 99.0 | ||
1F:74 [ARG] | 1A:2456 [G] | 3.89 | 1A:2088 [C] | 99.0 | ||
1F:74 [ARG] | 1A:2457 [G] | 2.54 | 1A:2087 [C] | 99.0 | ||
1F:75 [HIS] | 1A:720 [C] | 4.55 | 1A:854 [U] | 73.39 | ||
1F:75 [HIS] | 1A:721 [G] | 3.85 | 1A:853 [C] | 73.39 | ||
1F:75 [HIS] | 1A:722 [A] | 3.72 | 1A:850 [U] | 73.39 | ||
1F:75 [HIS] | 1A:1302 [G] | 3.2 | 1A:607 [C] | 73.39 | ||
1F:75 [HIS] | 1A:1303 [C] | 2.88 | 1A:606 [G] | 73.39 | ||
1F:76 [GLY] | 1A:721 [G] | 3.43 | 1A:853 [C] | 97.26 | ||
1F:76 [GLY] | 1A:722 [A] | 3.51 | 1A:850 [U] | 97.26 | ||
1F:77 [ASP] | 1A:721 [G] | 4.26 | 1A:853 [C] | 82.27 | ||
1F:78 [ILE] | 1A:495 [G] | 3.91 | 1A:486 [A] | 61.06 | ||
1F:80 [ALA] | 1A:720 [C] | 3.75 | 1A:854 [U] | 90.41 | ||
1F:80 [ALA] | 1A:721 [G] | 4.01 | 1A:853 [C] | 90.41 | ||
1F:81 [PRO] | 1A:607 [C] | 4.87 | 1A:1302 [G] | 90.1 | ||
1F:81 [PRO] | 1A:608 [G] | 4.17 | 1A:1300 [A] | 90.1 | ||
1F:81 [PRO] | 1A:719 [C] | 3.81 | 1A:855 [G] | 90.1 | ||
1F:81 [PRO] | 1A:720 [C] | 3.53 | 1A:854 [U] | 90.1 | ||
1F:82 [ILE] | 1A:607 [C] | 4.21 | 1A:1302 [G] | 69.38 | ||
1F:82 [ILE] | 1A:608 [G] | 4.77 | 1A:1300 [A] | 69.38 | ||
1F:82 [ILE] | 1A:720 [C] | 4.09 | 1A:854 [U] | 69.38 | ||
1F:82 [ILE] | 1A:1300 [A] | 3.58 | 1A:608 [G] | 69.38 | ||
1F:82 [ILE] | 1A:1302 [G] | 2.87 | 1A:607 [C] | base:BB | 69.38 | |
1F:82 [ILE] | 1A:1303 [C] | 3.25 | 1A:606 [G] | 69.38 | ||
1F:83 [PHE] | 1A:607 [C] | 4.97 | 1A:1302 [G] | 64.17 | ||
1F:83 [PHE] | 1A:1303 [C] | 3.3 | 1A:606 [G] | 64.17 | ||
1F:83 [PHE] | 1A:1304 [C] | 4.72 | 1A:605 [G] | 64.17 | ||
1F:84 [VAL] | 1A:474 [U] | 3.35 | 77.03 | |||
1F:84 [VAL] | 1A:475 [A] | 3.94 | 1A:480 [A] | 77.03 | ||
1F:84 [VAL] | 1A:606 [G] | 3.44 | 1A:1303 [C] | 77.03 | ||
1F:84 [VAL] | 1A:607 [C] | 4.54 | 1A:1302 [G] | 77.03 | ||
1F:84 [VAL] | 1A:1303 [C] | 2.85 | 1A:606 [G] | sugar:BB | 77.03 | |
1F:84 [VAL] | 1A:1304 [C] | 3.39 | 1A:605 [G] | 77.03 | ||
1F:85 [GLY] | 1A:474 [U] | 4.08 | 84.24 | |||
1F:85 [GLY] | 1A:475 [A] | 2.8 | 1A:480 [A] | 84.24 | ||
1F:85 [GLY] | 1A:478 [G] | 4.98 | 84.24 | |||
1F:86 [GLY] | 1A:475 [A] | 4.47 | 1A:480 [A] | 98.93 | ||
1F:86 [GLY] | 1A:476 [G] | 4.86 | 98.93 | |||
1F:88 [VAL] | 1A:476 [G] | 3.48 | 68.02 | |||
1F:88 [VAL] | 1A:1294 [G] | 3.78 | 68.02 | |||
1F:89 [VAL] | 1A:609 [A] | 3.46 | 1A:1297 [C] | 78.38 | ||
1F:89 [VAL] | 1A:718 [C] | 4.94 | 1A:856 [G] | 78.38 | ||
1F:89 [VAL] | 1A:719 [C] | 3.85 | 1A:855 [G] | 78.38 | ||
1F:90 [PHE] | 1A:610 [C] | 3.86 | 1A:857 [U] | 85.19 | ||
1F:90 [PHE] | 1A:611 [U] | 3.28 | 1A:717 [A] | base/AA stacks | 85.19 | |
1F:90 [PHE] | 1A:716 [G] | 3.66 | 85.19 | |||
1F:90 [PHE] | 1A:717 [A] | 4.06 | 1A:611 [U] | 85.19 | ||
1F:90 [PHE] | 1A:718 [C] | 3.39 | 1A:856 [G] | 85.19 | ||
1F:90 [PHE] | 1A:719 [C] | 3.52 | 1A:855 [G] | 85.19 | ||
1F:90 [PHE] | 1A:1294 [G] | 3.91 | 85.19 | |||
1F:91 [GLY] | 1A:1294 [G] | 3.76 | 94.94 | |||
1F:92 [PRO] | 1A:1294 [G] | 3.47 | 96.09 | |||
1F:94 [PRO] | 1A:38 [A] | 3.54 | 1A:467 [U] | 78.15 | ||
1F:94 [PRO] | 1A:39 [C] | 4.41 | 1A:466 [G] | 78.15 | ||
1F:95 [ARG] | 1A:612 [C] | 3.44 | 1A:715 [G] | 86.56 | ||
1F:95 [ARG] | 1A:613 [A] | 3.07 | 1A:714 [U] | 86.56 | ||
1F:95 [ARG] | 1A:1292 [A] | 4.32 | 1A:1244 [U] | 86.56 | ||
1F:95 [ARG] | 1A:1293 [A] | 2.65 | 1A:1243 [U] | 86.56 | ||
1F:97 [TYR] | 1A:470 [C] | 4.74 | 1A:36 [G] | 57.91 | ||
1F:97 [TYR] | 1A:1292 [A] | 4.47 | 1A:1244 [U] | 57.91 | ||
1F:97 [TYR] | 1A:1293 [A] | 4.44 | 1A:1243 [U] | 57.91 | ||
1F:99 [TYR] | 1A:706 [C] | 3.58 | 1A:621 [G] | 33.85 | ||
1F:99 [TYR] | 1A:707 [G] | 3.31 | 1A:620 [U] | 33.85 | ||
1F:100 [THR] | 1A:630 [U] | 3.81 | 1A:646 [A] | 48.36 | ||
1F:100 [THR] | 1A:631 [A] | 2.57 | 48.36 | |||
1F:100 [THR] | 1A:705 [C] | 4.89 | 1A:622 [G] | 48.36 | ||
1F:100 [THR] | 1A:706 [C] | 3.21 | 1A:621 [G] | 48.36 | ||
1F:101 [LEU] | 1A:630 [U] | 3.87 | 1A:646 [A] | 69.22 | ||
1F:101 [LEU] | 1A:706 [C] | 3.7 | 1A:621 [G] | 69.22 | ||
1F:102 [PRO] | 1A:622 [G] | 4.36 | 1A:705 [C] | 78.4 | ||
1F:102 [PRO] | 1A:629 [U] | 4.55 | 1A:647 [G] | 78.4 | ||
1F:102 [PRO] | 1A:630 [U] | 2.93 | 1A:646 [A] | 78.4 | ||
1F:102 [PRO] | 1A:705 [C] | 3.67 | 1A:622 [G] | 78.4 | ||
1F:102 [PRO] | 1A:706 [C] | 3.48 | 1A:621 [G] | 78.4 | ||
1F:103 [LYS] | 1A:630 [U] | 2.88 | 1A:646 [A] | 77.25 | ||
1F:103 [LYS] | 1A:643 [C] | 3.46 | 1A:633 [G] | 77.25 | ||
1F:103 [LYS] | 1A:644 [G] | 2.84 | 1A:632 [A] | base:SC | 77.25 | |
1F:103 [LYS] | 1A:645 [G] | 3.42 | base:SC | 77.25 | ||
1F:104 [LYS] | 1A:623 [G] | 3.95 | 1A:704 [U] | 87.98 | ||
1F:104 [LYS] | 1A:624 [C] | 3.12 | 1A:703 [G] | sugar:SC | 87.98 | |
1F:104 [LYS] | 1A:628 [C] | 3.17 | 1A:648 [G] | 87.98 | ||
1F:104 [LYS] | 1A:629 [U] | 3.13 | 1A:647 [G] | 87.98 | ||
1F:105 [VAL] | 1A:622 [G] | 4.79 | 1A:705 [C] | 74.59 | ||
1F:105 [VAL] | 1A:623 [G] | 3.68 | 1A:704 [U] | 74.59 | ||
1F:106 [ARG] | 1A:630 [U] | 4.62 | 1A:646 [A] | 78.1 | ||
1F:106 [ARG] | 1A:642 [G] | 2.92 | 1A:634 [C] | 78.1 | ||
1F:107 [LYS] | 1A:642 [G] | 4.67 | 1A:634 [C] | 68.75 | ||
1F:108 [LYS] | 1A:623 [G] | 3.61 | 1A:704 [U] | 44.83 | ||
1F:108 [LYS] | 1A:624 [C] | 2.97 | 1A:703 [G] | 44.83 | ||
1F:134 [GLY] | 1A:345 [G] | 3.11 | 0.0 | |||
1F:135 [LYS] | 1A:343 [C] | 4.98 | 1A:347 [G] | 0.0 | ||
1F:135 [LYS] | 1A:344 [A] | 2.54 | 0.0 | |||
1F:135 [LYS] | 1A:345 [G] | 2.78 | 0.0 | |||
1F:136 [THR] | 1A:344 [A] | 3.18 | 0.0 | |||
1F:136 [THR] | 1A:345 [G] | 2.78 | 0.0 | |||
1F:136 [THR] | 1A:346 [A] | 4.2 | 1A:363 [U] | 0.0 | ||
1F:137 [LYS] | 1A:344 [A] | 4.11 | 0.0 | |||
1F:137 [LYS] | 1A:345 [G] | 4.72 | 0.0 | |||
1F:140 [LEU] | 1A:344 [A] | 3.89 | 0.0 | |||
1F:165 [ARG] | 1A:345 [G] | 3.26 | base/AA stacks | 0.0 | ||
1F:165 [ARG] | 1A:346 [A] | 4.01 | 1A:363 [U] | 0.0 | ||
1F:166 [ALA] | 1A:345 [G] | 4.4 | 0.0 | |||
1F:168 [ARG] | 1A:345 [G] | 3.2 | 0.0 | |||
1F:168 [ARG] | 1A:346 [A] | 2.87 | 1A:363 [U] | 0.0 | ||
1F:168 [ARG] | 1A:364 [A] | 3.42 | 1A:322 [G] | sugar:SC | 0.0 | |
1F:168 [ARG] | 1A:1250 [U] | 4.8 | 0.0 | |||
1F:169 [ASN] | 1A:344 [A] | 3.23 | base:SC | 0.0 | ||
1F:169 [ASN] | 1A:346 [A] | 3.16 | 1A:363 [U] | 0.0 | ||
1F:169 [ASN] | 1A:347 [G] | 2.65 | 1A:343 [C] | sugar:BB | 0.0 | |
1F:169 [ASN] | 1A:348 [A] | 4.37 | 1A:362 [G] | 0.0 | ||
1F:170 [LEU] | 1A:344 [A] | 3.36 | 0.0 | |||
1F:170 [LEU] | 1A:347 [G] | 4.17 | 1A:343 [C] | 0.0 | ||
1F:170 [LEU] | 1A:1250 [U] | 4.08 | 0.0 | |||
1F:171 [PRO] | 1A:344 [A] | 4.72 | 0.0 | |||
1F:171 [PRO] | 1A:347 [G] | 3.4 | 1A:343 [C] | 0.0 | ||
1F:171 [PRO] | 1A:1250 [U] | 3.67 | 0.0 | |||
1F:176 [LEU] | 1A:640 [A] | 3.47 | 1A:636 [G] | 0.0 | ||
1F:177 [ALA] | 1A:640 [A] | 3.95 | 1A:636 [G] | 49.14 | ||
1F:179 [GLU] | 1A:640 [A] | 3.58 | 1A:636 [G] | 8.02 | ||
1F:179 [GLU] | 1A:641 [G] | 3.03 | 1A:635 [C] | sugar:BB | 8.02 | |
1F:180 [GLY] | 1A:640 [A] | 3.22 | 1A:636 [G] | 54.3 | ||
1F:180 [GLY] | 1A:641 [G] | 4.44 | 1A:635 [C] | 54.3 | ||
1F:181 [LEU] | 1A:641 [G] | 4.02 | 1A:635 [C] | 62.12 | ||
1F:182 [ASN] | 1A:640 [A] | 3.42 | 1A:636 [G] | 88.81 | ||
1F:182 [ASN] | 1A:641 [G] | 3.64 | 1A:635 [C] | 88.81 | ||
1F:184 [TYR] | 1A:1247 [C] | 2.92 | 1A:1289 [G] | sugar:SC | 57.93 | |
1F:184 [TYR] | 1A:1248 [G] | 4.17 | 1A:1288 [A] | 57.93 | ||
1F:185 [ASP] | 1A:640 [A] | 4.16 | 1A:636 [G] | 85.46 | ||
1F:188 [ARG] | 1A:1248 [G] | 4.89 | 1A:1288 [A] | 0.0 | ||
1F:205 [ARG] | 1A:641 [G] | 3.14 | 1A:635 [C] | 71.22 | ||
1F:205 [ARG] | 1A:642 [G] | 3.71 | 1A:634 [C] | 71.22 | ||
1F:311 [ARG] | 1A:637 [U] | 4.23 | 0.0 | |||
1F:311 [ARG] | 1A:638 [U] | 3.15 | 0.0 | |||
1F:311 [ARG] | 1A:639 [G] | 2.95 | 0.0 | |||
1F:311 [ARG] | 1A:640 [A] | 4.88 | 1A:636 [G] | 0.0 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group126 | 4Y4O_1F_1A | 1F: 50s ribosomal protein l4, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) | Q5SHN9 | Ribosomal protein L4 | Bacterial large subunit ribosomal RNA | ✔ |
Interologs
Total number of interologs for this interface: 9
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
4Y4O_1F_1A | 6AZ3_C_1,7 | 0.58 | 0.63 | 2.26 | 0.16 | compare | ||
4Y4O_1F_1A | 7O7Y_BC_B5,B8 | 0.58 | 0.9 | 2.36 | 0.2 | Ribosomal protein L4 | compare | |
1VQ8_C_0 | 4Y4O_1F_1A | 0.65 | 0.92 | 2.06 | 0.24 | Ribosomal protein L4 | compare | |
1YHQ_C_0 | 4Y4O_1F_1A | 0.65 | 0.92 | 2.09 | 0.24 | Ribosomal protein L4 | compare | |
3CC2_C_0 | 4Y4O_1F_1A | 0.66 | 0.92 | 2.07 | 0.24 | Ribosomal protein L4 | compare | |
4Y4O_1F_1A | 7RYG_E_A | 0.74 | 0.96 | 1.8 | 0.47 | Ribosomal protein L4 | Bacterial large subunit ribosomal RNA | compare |
4Y4O_1F_1A | 7K00_e_a | 0.77 | 0.96 | 1.16 | 0.47 | Ribosomal protein L4 | Bacterial large subunit ribosomal RNA | compare |
4Y4O_1F_1A | 6S0Z_E_A | 0.78 | 0.97 | 1.43 | 0.53 | Ribosomal protein L4 | Bacterial large subunit ribosomal RNA | compare |
4Y4O_1F_1A | 7OF0_F_A | 0.80 | 0.94 | 1.15 | 0.47 | Ribosomal protein L4 | Bacterial large subunit ribosomal RNA | compare |