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All interfaces > All interologs > Interface groups > group126 > 4Y4O_1F_1A

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1F
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1F:29 [ASN] 1A:622 [G] 3.32 1A:705 [C] 0.0
1F:29 [ASN] 1A:623 [G] 3.36 1A:704 [U] 0.0
1F:31 [HIS] 1A:621 [G] 3.15 1A:706 [C] 43.05
1F:31 [HIS] 1A:622 [G] 3.64 1A:705 [C] 43.05
1F:32 [LEU] 1A:622 [G] 4.17 1A:705 [C] 69.61
1F:32 [LEU] 1A:623 [G] 3.66 1A:704 [U] 69.61
1F:34 [TRP] 1A:707 [G] 4.67 1A:620 [U] 66.23
1F:34 [TRP] 1A:1290 [G] 3.14 1A:1246 [C] sugar:SC 66.23
1F:34 [TRP] 1A:1291 [G] 3.74 1A:1245 [C] 66.23
1F:35 [GLU] 1A:621 [G] 2.76 1A:706 [C] base:SC 69.47
1F:35 [GLU] 1A:622 [G] 4.64 1A:705 [C] 69.47
1F:35 [GLU] 1A:706 [C] 4.31 1A:621 [G] 69.47
1F:35 [GLU] 1A:707 [G] 4.51 1A:620 [U] 69.47
1F:38 [ARG] 1A:469 [A] 4.98 57.01
1F:38 [ARG] 1A:707 [G] 2.69 1A:620 [U] 57.01
1F:38 [ARG] 1A:708 [C] 3.26 1A:619 [G] 57.01
1F:38 [ARG] 1A:1291 [G] 3.62 1A:1245 [C] 57.01
1F:38 [ARG] 1A:1292 [A] 2.62 1A:1244 [U] 57.01
1F:39 [TRP] 1A:641 [G] 4.12 1A:635 [C] 60.4
1F:39 [TRP] 1A:642 [G] 3.39 1A:634 [C] 60.4
1F:40 [GLN] 1A:640 [A] 4.5 1A:636 [G] 67.92
1F:40 [GLN] 1A:641 [G] 2.67 1A:635 [C] 67.92
1F:41 [LEU] 1A:469 [A] 2.93 base:BB 64.29
1F:41 [LEU] 1A:1247 [C] 4.56 1A:1289 [G] 64.29
1F:42 [ALA] 1A:469 [A] 3.63 79.18
1F:43 [LYS] 1A:641 [G] 2.59 1A:635 [C] 85.02
1F:44 [ARG] 1A:469 [A] 4.36 65.6
1F:44 [ARG] 1A:639 [G] 2.79 base:BB base/AA stacks 65.6
1F:44 [ARG] 1A:1247 [C] 4.36 1A:1289 [G] 65.6
1F:45 [ARG] 1A:469 [A] 3.2 base/AA stacks 94.83
1F:45 [ARG] 1A:470 [C] 3.0 1A:36 [G] 94.83
1F:45 [ARG] 1A:639 [G] 4.18 94.83
1F:45 [ARG] 1A:1292 [A] 2.86 1A:1244 [U] sugar:SC 94.83
1F:46 [ARG] 1A:38 [A] 4.24 1A:467 [U] 65.33
1F:46 [ARG] 1A:39 [C] 2.68 1A:466 [G] base:SC, sugar:SC 65.33
1F:46 [ARG] 1A:466 [G] 3.55 1A:39 [C] 65.33
1F:46 [ARG] 1A:467 [U] 2.92 1A:38 [A] base:SC, sugar:SC 65.33
1F:46 [ARG] 1A:468 [G] 3.49 1A:37 [C] 65.33
1F:46 [ARG] 1A:469 [A] 2.78 65.33
1F:46 [ARG] 1A:639 [G] 3.94 65.33
1F:47 [GLY] 1A:38 [A] 4.35 1A:467 [U] 80.47
1F:47 [GLY] 1A:469 [A] 4.33 80.47
1F:47 [GLY] 1A:470 [C] 4.66 1A:36 [G] 80.47
1F:48 [THR] 1A:37 [C] 4.32 1A:468 [G] 86.2
1F:48 [THR] 1A:38 [A] 3.36 1A:467 [U] 86.2
1F:48 [THR] 1A:39 [C] 4.1 1A:466 [G] 86.2
1F:48 [THR] 1A:468 [G] 2.74 1A:37 [C] base:BB, base:SC 86.2
1F:48 [THR] 1A:470 [C] 4.24 1A:36 [G] 86.2
1F:49 [ALA] 1A:38 [A] 4.9 1A:467 [U] 82.75
1F:49 [ALA] 1A:468 [G] 4.82 1A:37 [C] 82.75
1F:49 [ALA] 1A:470 [C] 3.5 1A:36 [G] 82.75
1F:50 [SER] 1A:37 [C] 3.54 1A:468 [G] 77.04
1F:50 [SER] 1A:38 [A] 3.56 1A:467 [U] 77.04
1F:50 [SER] 1A:470 [C] 4.3 1A:36 [G] 77.04
1F:50 [SER] 1A:476 [G] 4.83 77.04
1F:50 [SER] 1A:477 [C] 4.53 77.04
1F:50 [SER] 1A:1294 [G] 4.4 77.04
1F:51 [THR] 1A:37 [C] 4.95 1A:468 [G] 87.42
1F:51 [THR] 1A:476 [G] 3.91 87.42
1F:51 [THR] 1A:477 [C] 4.35 87.42
1F:51 [THR] 1A:1294 [G] 3.33 87.42
1F:52 [LYS] 1A:37 [C] 3.85 1A:468 [G] 92.83
1F:52 [LYS] 1A:38 [A] 4.4 1A:467 [U] 92.83
1F:52 [LYS] 1A:477 [C] 3.21 92.83
1F:52 [LYS] 1A:478 [G] 4.16 92.83
1F:53 [THR] 1A:716 [G] 4.44 78.25
1F:53 [THR] 1A:848 [G] 2.78 base:SC 78.25
1F:54 [ARG] 1A:720 [C] 2.86 1A:854 [U] 94.06
1F:54 [ARG] 1A:721 [G] 2.79 1A:853 [C] 94.06
1F:54 [ARG] 1A:848 [G] 3.2 base/AA stacks 94.06
1F:55 [GLY] 1A:848 [G] 3.28 71.55
1F:56 [GLU] 1A:478 [G] 4.54 78.09
1F:57 [VAL] 1A:478 [G] 3.15 95.94
1F:58 [ALA] 1A:477 [C] 4.95 68.33
1F:58 [ALA] 1A:478 [G] 2.69 68.33
1F:58 [ALA] 1A:484 [G] 4.23 68.33
1F:58 [ALA] 1A:495 [G] 4.41 1A:486 [A] 68.33
1F:59 [TYR] 1A:478 [G] 3.26 79.84
1F:59 [TYR] 1A:495 [G] 3.33 1A:486 [A] 79.84
1F:59 [TYR] 1A:496 [A] 3.37 1A:485 [U] 79.84
1F:59 [TYR] 1A:845 [G] 4.1 1A:726 [C] 79.84
1F:60 [SER] 1A:494 [G] 3.68 1A:487 [C] 87.69
1F:60 [SER] 1A:495 [G] 2.87 1A:486 [A] 87.69
1F:60 [SER] 1A:843 [C] 4.91 1A:728 [G] 87.69
1F:60 [SER] 1A:844 [C] 2.57 1A:727 [G] 87.69
1F:60 [SER] 1A:845 [G] 3.93 1A:726 [C] 87.69
1F:61 [GLY] 1A:844 [C] 4.82 1A:727 [G] 76.76
1F:61 [GLY] 1A:845 [G] 2.93 1A:726 [C] 76.76
1F:62 [ARG] 1A:494 [G] 3.48 1A:487 [C] 73.92
1F:62 [ARG] 1A:843 [C] 3.7 1A:728 [G] 73.92
1F:62 [ARG] 1A:844 [C] 3.42 1A:727 [G] 73.92
1F:62 [ARG] 1A:845 [G] 4.7 1A:726 [C] 73.92
1F:63 [LYS] 1A:721 [G] 3.32 1A:853 [C] 98.89
1F:63 [LYS] 1A:722 [A] 2.75 1A:850 [U] 98.89
1F:63 [LYS] 1A:723 [A] 3.42 1A:849 [A] 98.89
1F:65 [TRP] 1A:1303 [C] 4.17 1A:606 [G] 43.83
1F:66 [PRO] 1A:837 [C] 3.72 80.62
1F:67 [GLN] 1A:721 [G] 2.9 1A:853 [C] sugar:SC, sugar:SC 99.0
1F:67 [GLN] 1A:722 [A] 3.08 1A:850 [U] 99.0
1F:67 [GLN] 1A:723 [A] 4.39 1A:849 [A] 99.0
1F:67 [GLN] 1A:1301 [U] 4.36 99.0
1F:67 [GLN] 1A:2082 [A] 4.93 99.0
1F:67 [GLN] 1A:2455 [C] 3.82 1A:2089 [G] 99.0
1F:67 [GLN] 1A:2456 [G] 3.1 1A:2088 [C] 99.0
1F:68 [LYS] 1A:2081 [A] 4.99 98.98
1F:68 [LYS] 1A:2082 [A] 3.3 sugar:SC 98.98
1F:68 [LYS] 1A:2083 [G] 2.85 1A:2463 [A] 98.98
1F:68 [LYS] 1A:2084 [A] 4.92 98.98
1F:68 [LYS] 1A:2455 [C] 3.07 1A:2089 [G] 98.98
1F:68 [LYS] 1A:2456 [G] 2.85 1A:2088 [C] 98.98
1F:69 [HIS] 1A:2081 [A] 2.84 87.55
1F:69 [HIS] 1A:2082 [A] 2.74 87.55
1F:69 [HIS] 1A:2084 [A] 3.99 87.55
1F:69 [HIS] 1A:2455 [C] 4.0 1A:2089 [G] 87.55
1F:70 [THR] 1A:2081 [A] 4.34 96.27
1F:70 [THR] 1A:2082 [A] 4.39 96.27
1F:71 [GLY] 1A:1301 [U] 3.45 98.93
1F:71 [GLY] 1A:2081 [A] 3.26 98.93
1F:71 [GLY] 1A:2082 [A] 3.34 98.93
1F:72 [ARG] 1A:1301 [U] 3.03 84.66
1F:72 [ARG] 1A:1302 [G] 4.96 1A:607 [C] 84.66
1F:72 [ARG] 1A:1303 [C] 3.05 1A:606 [G] 84.66
1F:72 [ARG] 1A:1304 [C] 3.52 1A:605 [G] 84.66
1F:72 [ARG] 1A:2082 [A] 4.57 84.66
1F:73 [ALA] 1A:1301 [U] 3.69 98.3
1F:73 [ALA] 1A:1302 [G] 3.48 1A:607 [C] 98.3
1F:73 [ALA] 1A:1303 [C] 3.94 1A:606 [G] 98.3
1F:74 [ARG] 1A:720 [C] 4.65 1A:854 [U] 99.0
1F:74 [ARG] 1A:721 [G] 3.15 1A:853 [C] base/AA stacks 99.0
1F:74 [ARG] 1A:854 [U] 3.3 1A:720 [C] base:SC 99.0
1F:74 [ARG] 1A:1301 [U] 4.17 99.0
1F:74 [ARG] 1A:2082 [A] 3.7 base/AA stacks 99.0
1F:74 [ARG] 1A:2456 [G] 3.89 1A:2088 [C] 99.0
1F:74 [ARG] 1A:2457 [G] 2.54 1A:2087 [C] 99.0
1F:75 [HIS] 1A:720 [C] 4.55 1A:854 [U] 73.39
1F:75 [HIS] 1A:721 [G] 3.85 1A:853 [C] 73.39
1F:75 [HIS] 1A:722 [A] 3.72 1A:850 [U] 73.39
1F:75 [HIS] 1A:1302 [G] 3.2 1A:607 [C] 73.39
1F:75 [HIS] 1A:1303 [C] 2.88 1A:606 [G] 73.39
1F:76 [GLY] 1A:721 [G] 3.43 1A:853 [C] 97.26
1F:76 [GLY] 1A:722 [A] 3.51 1A:850 [U] 97.26
1F:77 [ASP] 1A:721 [G] 4.26 1A:853 [C] 82.27
1F:78 [ILE] 1A:495 [G] 3.91 1A:486 [A] 61.06
1F:80 [ALA] 1A:720 [C] 3.75 1A:854 [U] 90.41
1F:80 [ALA] 1A:721 [G] 4.01 1A:853 [C] 90.41
1F:81 [PRO] 1A:607 [C] 4.87 1A:1302 [G] 90.1
1F:81 [PRO] 1A:608 [G] 4.17 1A:1300 [A] 90.1
1F:81 [PRO] 1A:719 [C] 3.81 1A:855 [G] 90.1
1F:81 [PRO] 1A:720 [C] 3.53 1A:854 [U] 90.1
1F:82 [ILE] 1A:607 [C] 4.21 1A:1302 [G] 69.38
1F:82 [ILE] 1A:608 [G] 4.77 1A:1300 [A] 69.38
1F:82 [ILE] 1A:720 [C] 4.09 1A:854 [U] 69.38
1F:82 [ILE] 1A:1300 [A] 3.58 1A:608 [G] 69.38
1F:82 [ILE] 1A:1302 [G] 2.87 1A:607 [C] base:BB 69.38
1F:82 [ILE] 1A:1303 [C] 3.25 1A:606 [G] 69.38
1F:83 [PHE] 1A:607 [C] 4.97 1A:1302 [G] 64.17
1F:83 [PHE] 1A:1303 [C] 3.3 1A:606 [G] 64.17
1F:83 [PHE] 1A:1304 [C] 4.72 1A:605 [G] 64.17
1F:84 [VAL] 1A:474 [U] 3.35 77.03
1F:84 [VAL] 1A:475 [A] 3.94 1A:480 [A] 77.03
1F:84 [VAL] 1A:606 [G] 3.44 1A:1303 [C] 77.03
1F:84 [VAL] 1A:607 [C] 4.54 1A:1302 [G] 77.03
1F:84 [VAL] 1A:1303 [C] 2.85 1A:606 [G] sugar:BB 77.03
1F:84 [VAL] 1A:1304 [C] 3.39 1A:605 [G] 77.03
1F:85 [GLY] 1A:474 [U] 4.08 84.24
1F:85 [GLY] 1A:475 [A] 2.8 1A:480 [A] 84.24
1F:85 [GLY] 1A:478 [G] 4.98 84.24
1F:86 [GLY] 1A:475 [A] 4.47 1A:480 [A] 98.93
1F:86 [GLY] 1A:476 [G] 4.86 98.93
1F:88 [VAL] 1A:476 [G] 3.48 68.02
1F:88 [VAL] 1A:1294 [G] 3.78 68.02
1F:89 [VAL] 1A:609 [A] 3.46 1A:1297 [C] 78.38
1F:89 [VAL] 1A:718 [C] 4.94 1A:856 [G] 78.38
1F:89 [VAL] 1A:719 [C] 3.85 1A:855 [G] 78.38
1F:90 [PHE] 1A:610 [C] 3.86 1A:857 [U] 85.19
1F:90 [PHE] 1A:611 [U] 3.28 1A:717 [A] base/AA stacks 85.19
1F:90 [PHE] 1A:716 [G] 3.66 85.19
1F:90 [PHE] 1A:717 [A] 4.06 1A:611 [U] 85.19
1F:90 [PHE] 1A:718 [C] 3.39 1A:856 [G] 85.19
1F:90 [PHE] 1A:719 [C] 3.52 1A:855 [G] 85.19
1F:90 [PHE] 1A:1294 [G] 3.91 85.19
1F:91 [GLY] 1A:1294 [G] 3.76 94.94
1F:92 [PRO] 1A:1294 [G] 3.47 96.09
1F:94 [PRO] 1A:38 [A] 3.54 1A:467 [U] 78.15
1F:94 [PRO] 1A:39 [C] 4.41 1A:466 [G] 78.15
1F:95 [ARG] 1A:612 [C] 3.44 1A:715 [G] 86.56
1F:95 [ARG] 1A:613 [A] 3.07 1A:714 [U] 86.56
1F:95 [ARG] 1A:1292 [A] 4.32 1A:1244 [U] 86.56
1F:95 [ARG] 1A:1293 [A] 2.65 1A:1243 [U] 86.56
1F:97 [TYR] 1A:470 [C] 4.74 1A:36 [G] 57.91
1F:97 [TYR] 1A:1292 [A] 4.47 1A:1244 [U] 57.91
1F:97 [TYR] 1A:1293 [A] 4.44 1A:1243 [U] 57.91
1F:99 [TYR] 1A:706 [C] 3.58 1A:621 [G] 33.85
1F:99 [TYR] 1A:707 [G] 3.31 1A:620 [U] 33.85
1F:100 [THR] 1A:630 [U] 3.81 1A:646 [A] 48.36
1F:100 [THR] 1A:631 [A] 2.57 48.36
1F:100 [THR] 1A:705 [C] 4.89 1A:622 [G] 48.36
1F:100 [THR] 1A:706 [C] 3.21 1A:621 [G] 48.36
1F:101 [LEU] 1A:630 [U] 3.87 1A:646 [A] 69.22
1F:101 [LEU] 1A:706 [C] 3.7 1A:621 [G] 69.22
1F:102 [PRO] 1A:622 [G] 4.36 1A:705 [C] 78.4
1F:102 [PRO] 1A:629 [U] 4.55 1A:647 [G] 78.4
1F:102 [PRO] 1A:630 [U] 2.93 1A:646 [A] 78.4
1F:102 [PRO] 1A:705 [C] 3.67 1A:622 [G] 78.4
1F:102 [PRO] 1A:706 [C] 3.48 1A:621 [G] 78.4
1F:103 [LYS] 1A:630 [U] 2.88 1A:646 [A] 77.25
1F:103 [LYS] 1A:643 [C] 3.46 1A:633 [G] 77.25
1F:103 [LYS] 1A:644 [G] 2.84 1A:632 [A] base:SC 77.25
1F:103 [LYS] 1A:645 [G] 3.42 base:SC 77.25
1F:104 [LYS] 1A:623 [G] 3.95 1A:704 [U] 87.98
1F:104 [LYS] 1A:624 [C] 3.12 1A:703 [G] sugar:SC 87.98
1F:104 [LYS] 1A:628 [C] 3.17 1A:648 [G] 87.98
1F:104 [LYS] 1A:629 [U] 3.13 1A:647 [G] 87.98
1F:105 [VAL] 1A:622 [G] 4.79 1A:705 [C] 74.59
1F:105 [VAL] 1A:623 [G] 3.68 1A:704 [U] 74.59
1F:106 [ARG] 1A:630 [U] 4.62 1A:646 [A] 78.1
1F:106 [ARG] 1A:642 [G] 2.92 1A:634 [C] 78.1
1F:107 [LYS] 1A:642 [G] 4.67 1A:634 [C] 68.75
1F:108 [LYS] 1A:623 [G] 3.61 1A:704 [U] 44.83
1F:108 [LYS] 1A:624 [C] 2.97 1A:703 [G] 44.83
1F:134 [GLY] 1A:345 [G] 3.11 0.0
1F:135 [LYS] 1A:343 [C] 4.98 1A:347 [G] 0.0
1F:135 [LYS] 1A:344 [A] 2.54 0.0
1F:135 [LYS] 1A:345 [G] 2.78 0.0
1F:136 [THR] 1A:344 [A] 3.18 0.0
1F:136 [THR] 1A:345 [G] 2.78 0.0
1F:136 [THR] 1A:346 [A] 4.2 1A:363 [U] 0.0
1F:137 [LYS] 1A:344 [A] 4.11 0.0
1F:137 [LYS] 1A:345 [G] 4.72 0.0
1F:140 [LEU] 1A:344 [A] 3.89 0.0
1F:165 [ARG] 1A:345 [G] 3.26 base/AA stacks 0.0
1F:165 [ARG] 1A:346 [A] 4.01 1A:363 [U] 0.0
1F:166 [ALA] 1A:345 [G] 4.4 0.0
1F:168 [ARG] 1A:345 [G] 3.2 0.0
1F:168 [ARG] 1A:346 [A] 2.87 1A:363 [U] 0.0
1F:168 [ARG] 1A:364 [A] 3.42 1A:322 [G] sugar:SC 0.0
1F:168 [ARG] 1A:1250 [U] 4.8 0.0
1F:169 [ASN] 1A:344 [A] 3.23 base:SC 0.0
1F:169 [ASN] 1A:346 [A] 3.16 1A:363 [U] 0.0
1F:169 [ASN] 1A:347 [G] 2.65 1A:343 [C] sugar:BB 0.0
1F:169 [ASN] 1A:348 [A] 4.37 1A:362 [G] 0.0
1F:170 [LEU] 1A:344 [A] 3.36 0.0
1F:170 [LEU] 1A:347 [G] 4.17 1A:343 [C] 0.0
1F:170 [LEU] 1A:1250 [U] 4.08 0.0
1F:171 [PRO] 1A:344 [A] 4.72 0.0
1F:171 [PRO] 1A:347 [G] 3.4 1A:343 [C] 0.0
1F:171 [PRO] 1A:1250 [U] 3.67 0.0
1F:176 [LEU] 1A:640 [A] 3.47 1A:636 [G] 0.0
1F:177 [ALA] 1A:640 [A] 3.95 1A:636 [G] 49.14
1F:179 [GLU] 1A:640 [A] 3.58 1A:636 [G] 8.02
1F:179 [GLU] 1A:641 [G] 3.03 1A:635 [C] sugar:BB 8.02
1F:180 [GLY] 1A:640 [A] 3.22 1A:636 [G] 54.3
1F:180 [GLY] 1A:641 [G] 4.44 1A:635 [C] 54.3
1F:181 [LEU] 1A:641 [G] 4.02 1A:635 [C] 62.12
1F:182 [ASN] 1A:640 [A] 3.42 1A:636 [G] 88.81
1F:182 [ASN] 1A:641 [G] 3.64 1A:635 [C] 88.81
1F:184 [TYR] 1A:1247 [C] 2.92 1A:1289 [G] sugar:SC 57.93
1F:184 [TYR] 1A:1248 [G] 4.17 1A:1288 [A] 57.93
1F:185 [ASP] 1A:640 [A] 4.16 1A:636 [G] 85.46
1F:188 [ARG] 1A:1248 [G] 4.89 1A:1288 [A] 0.0
1F:205 [ARG] 1A:641 [G] 3.14 1A:635 [C] 71.22
1F:205 [ARG] 1A:642 [G] 3.71 1A:634 [C] 71.22
1F:311 [ARG] 1A:637 [U] 4.23 0.0
1F:311 [ARG] 1A:638 [U] 3.15 0.0
1F:311 [ARG] 1A:639 [G] 2.95 0.0
1F:311 [ARG] 1A:640 [A] 4.88 1A:636 [G] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
UniProt ID
ECOD label(s)
RFAM label(s)
Is ribosome? RCSB PDB link
group126 4Y4O_1F_1A 1F: 50s ribosomal protein l4, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHN9 Ribosomal protein L4 Bacterial large subunit ribosomal RNA

Interologs

Total number of interologs for this interface: 9