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All interfaces > All interologs > Interface groups > group127 > 1YHQ_L_0

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_L
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
L:1 [THR] 0:1299 [G] 3.85 0:906 [C] 71.1
L:1 [THR] 0:1300 [G] 2.81 0:905 [C] base:SC 71.1
L:2 [SER] 0:753 [U] 3.85 0:652 [G] 73.37
L:2 [SER] 0:754 [G] 4.04 0:651 [U] 73.37
L:3 [LYS] 0:753 [U] 4.69 0:652 [G] 89.27
L:3 [LYS] 0:754 [G] 3.7 0:651 [U] 89.27
L:3 [LYS] 0:755 [G] 2.82 0:650 [C] 89.27
L:3 [LYS] 0:1039 [G] 3.97 0:931 [C] 89.27
L:3 [LYS] 0:1296 [A] 2.77 0:909 [U] 89.27
L:3 [LYS] 0:1297 [U] 3.36 0:908 [A] 89.27
L:4 [LYS] 0:644 [G] 3.2 0:903 [U] 62.23
L:4 [LYS] 0:645 [U] 2.82 0:761 [A] 62.23
L:4 [LYS] 0:754 [G] 3.23 0:651 [U] 62.23
L:4 [LYS] 0:755 [G] 4.34 0:650 [C] 62.23
L:5 [LYS] 0:905 [C] 2.7 0:1300 [G] base:BB 77.84
L:5 [LYS] 0:1300 [G] 4.66 0:905 [C] 77.84
L:5 [LYS] 0:1301 [C] 3.78 0:1354 [G] 77.84
L:5 [LYS] 0:1302 [G] 2.86 0:1353 [C] base:SC 77.84
L:5 [LYS] 0:1353 [C] 3.01 0:1302 [G] base:SC, base:SC 77.84
L:5 [LYS] 0:1354 [G] 3.15 0:1301 [C] base:SC 77.84
L:6 [ARG] 0:905 [C] 3.89 0:1300 [G] 87.55
L:6 [ARG] 0:906 [C] 3.92 0:1299 [G] 87.55
L:6 [ARG] 0:907 [A] 4.05 0:1298 [U] 87.55
L:6 [ARG] 0:1298 [U] 3.17 0:907 [A] base/AA stacks 87.55
L:6 [ARG] 0:1299 [G] 2.79 0:906 [C] base:SC 87.55
L:6 [ARG] 0:1300 [G] 4.24 0:905 [C] 87.55
L:7 [GLN] 0:904 [U] 3.8 0.08
L:8 [ARG] 0:643 [A] 4.79 0:1355 [A] 93.18
L:8 [ARG] 0:644 [G] 2.64 0:903 [U] 93.18
L:8 [ARG] 0:903 [U] 4.27 0:644 [G] 93.18
L:8 [ARG] 0:904 [U] 3.21 base/AA stacks 93.18
L:8 [ARG] 0:905 [C] 3.96 0:1300 [G] 93.18
L:8 [ARG] 0:906 [C] 4.63 0:1299 [G] 93.18
L:8 [ARG] 0:1354 [G] 2.8 0:1301 [C] 93.18
L:9 [GLY] 0:903 [U] 4.84 0:644 [G] 92.22
L:9 [GLY] 0:904 [U] 2.76 92.22
L:9 [GLY] 0:905 [C] 4.07 0:1300 [G] 92.22
L:10 [SER] 0:904 [U] 3.3 80.7
L:11 [ARG] 0:622 [G] 4.91 0:633 [C] 86.51
L:11 [ARG] 0:623 [U] 3.29 0:632 [A] 86.51
L:11 [ARG] 0:624 [U] 3.92 0:628 [1MA] 86.51
L:11 [ARG] 0:902 [G] 3.26 0:762 [C] 86.51
L:11 [ARG] 0:903 [U] 2.5 0:644 [G] base:BB 86.51
L:11 [ARG] 0:904 [U] 2.88 86.51
L:12 [THR] 0:644 [G] 4.27 0:903 [U] 82.52
L:12 [THR] 0:903 [U] 3.35 0:644 [G] 82.52
L:12 [THR] 0:1294 [A] 4.12 0:911 [G] 82.52
L:12 [THR] 0:1295 [G] 2.82 0:910 [C] 82.52
L:13 [HIS] 0:644 [G] 3.28 0:903 [U] base/AA stacks 76.79
L:13 [HIS] 0:903 [U] 4.0 0:644 [G] 76.79
L:13 [HIS] 0:904 [U] 4.36 76.79
L:13 [HIS] 0:1295 [G] 4.63 0:910 [C] 76.79
L:14 [GLY] 0:1040 [A] 4.54 0:930 [C] 98.51
L:14 [GLY] 0:1041 [U] 3.69 0:929 [A] 98.51
L:14 [GLY] 0:1295 [G] 3.04 0:910 [C] 98.51
L:14 [GLY] 0:1296 [A] 4.27 0:909 [U] 98.51
L:15 [GLY] 0:1041 [U] 3.84 0:929 [A] 36.65
L:15 [GLY] 0:1042 [U] 4.29 36.65
L:15 [GLY] 0:1295 [G] 3.27 0:910 [C] 36.65
L:16 [GLY] 0:1041 [U] 3.6 0:929 [A] 98.56
L:16 [GLY] 0:1042 [U] 4.06 98.56
L:16 [GLY] 0:1294 [A] 3.23 0:911 [G] 98.56
L:16 [GLY] 0:1295 [G] 2.68 0:910 [C] 98.56
L:17 [SER] 0:624 [U] 4.68 0:628 [1MA] 71.13
L:17 [SER] 0:1041 [U] 4.41 0:929 [A] 71.13
L:17 [SER] 0:1042 [U] 3.33 71.13
L:17 [SER] 0:1294 [A] 4.44 0:911 [G] 71.13
L:18 [HIS] 0:623 [U] 4.28 0:632 [A] 59.57
L:18 [HIS] 0:624 [U] 3.29 0:628 [1MA] 59.57
L:18 [HIS] 0:901 [G] 2.91 0:763 [C] 59.57
L:18 [HIS] 0:902 [G] 2.94 0:762 [C] 59.57
L:18 [HIS] 0:903 [U] 3.13 0:644 [G] 59.57
L:19 [LYS] 0:624 [U] 3.27 0:628 [1MA] 92.52
L:19 [LYS] 0:625 [U] 2.99 0:2071 [C] 92.52
L:19 [LYS] 0:899 [C] 4.05 0:765 [G] 92.52
L:19 [LYS] 0:900 [U] 2.99 0:764 [C] 92.52
L:19 [LYS] 0:901 [G] 3.36 0:763 [C] 92.52
L:19 [LYS] 0:1044 [C] 4.96 92.52
L:19 [LYS] 0:2483 [A] 4.0 92.52
L:20 [ASN] 0:925 [C] 4.58 0:918 [G] 82.08
L:20 [ASN] 0:1041 [U] 4.21 0:929 [A] 82.08
L:20 [ASN] 0:1042 [U] 2.98 82.08
L:21 [ARG] 0:644 [G] 3.17 0:903 [U] base:SC 78.2
L:21 [ARG] 0:762 [C] 2.9 0:902 [G] base:BB 78.2
L:21 [ARG] 0:763 [C] 4.6 0:901 [G] 78.2
L:21 [ARG] 0:1041 [U] 4.98 0:929 [A] 78.2
L:22 [ARG] 0:762 [C] 4.6 0:902 [G] 94.0
L:22 [ARG] 0:898 [G] 3.38 94.0
L:22 [ARG] 0:899 [C] 2.6 0:765 [G] base/AA stacks 94.0
L:22 [ARG] 0:900 [U] 2.73 0:764 [C] 94.0
L:22 [ARG] 0:901 [G] 4.83 0:763 [C] 94.0
L:23 [GLY] 0:897 [A] 3.89 83.9
L:23 [GLY] 0:898 [G] 3.03 83.9
L:24 [ALA] 0:165 [A] 4.97 78.68
L:24 [ALA] 0:166 [A] 4.02 78.68
L:24 [ALA] 0:897 [A] 3.0 78.68
L:24 [ALA] 0:898 [G] 3.48 78.68
L:25 [GLY] 0:166 [A] 3.43 99.0
L:25 [GLY] 0:897 [A] 4.44 99.0
L:25 [GLY] 0:898 [G] 2.7 99.0
L:25 [GLY] 0:924 [G] 2.76 0:919 [U] sugar:BB 99.0
L:25 [GLY] 0:925 [C] 3.51 0:918 [G] 99.0
L:26 [HIS] 0:898 [G] 3.85 72.55
L:26 [HIS] 0:924 [G] 4.4 0:919 [U] 72.55
L:26 [HIS] 0:925 [C] 2.66 0:918 [G] 72.55
L:26 [HIS] 0:926 [A] 4.54 0:917 [U] 72.55
L:26 [HIS] 0:1041 [U] 4.88 0:929 [A] 72.55
L:27 [ARG] 0:757 [C] 2.91 0:648 [G] 83.73
L:27 [ARG] 0:758 [A] 2.93 0:647 [U] 83.73
L:27 [ARG] 0:759 [C] 4.83 0:646 [G] 83.73
L:27 [ARG] 0:925 [C] 4.27 0:918 [G] 83.73
L:28 [GLY] 0:166 [A] 3.4 98.86
L:28 [GLY] 0:925 [C] 3.46 0:918 [G] 98.86
L:29 [GLY] 0:165 [A] 3.36 97.99
L:29 [GLY] 0:166 [A] 3.21 97.99
L:29 [GLY] 0:758 [A] 4.65 0:647 [U] 97.99
L:30 [ARG] 0:164 [G] 3.46 0:171 [C] 70.0
L:30 [ARG] 0:165 [A] 2.92 70.0
L:30 [ARG] 0:166 [A] 4.95 70.0
L:30 [ARG] 0:222 [A] 4.67 0:218 [C] 70.0
L:30 [ARG] 0:223 [G] 4.65 0:217 [C] 70.0
L:30 [ARG] 0:757 [C] 4.53 0:648 [G] 70.0
L:30 [ARG] 0:758 [A] 3.2 0:647 [U] 70.0
L:30 [ARG] 0:759 [C] 3.15 0:646 [G] 70.0
L:30 [ARG] 0:761 [A] 3.5 0:645 [U] 70.0
L:30 [ARG] 0:896 [C] 3.41 0:766 [A] 70.0
L:30 [ARG] 0:897 [A] 3.21 70.0
L:31 [GLY] 0:222 [A] 4.64 0:218 [C] 99.0
L:31 [GLY] 0:223 [G] 3.46 0:217 [C] 99.0
L:31 [GLY] 0:757 [C] 3.3 0:648 [G] 99.0
L:31 [GLY] 0:758 [A] 2.87 0:647 [U] 99.0
L:32 [ASP] 0:222 [A] 3.56 0:218 [C] 53.96
L:32 [ASP] 0:223 [G] 2.99 0:217 [C] 53.96
L:33 [ALA] 0:165 [A] 3.9 91.65
L:33 [ALA] 0:166 [A] 3.82 91.65
L:33 [ALA] 0:222 [A] 4.6 0:218 [C] 91.65
L:34 [GLY] 0:165 [A] 4.67 96.98
L:34 [GLY] 0:166 [A] 3.05 96.98
L:35 [ARG] 0:221 [G] 3.4 0:170 [U] 62.26
L:35 [ARG] 0:222 [A] 2.96 0:218 [C] 62.26
L:36 [ASP] 0:166 [A] 4.47 70.22
L:36 [ASP] 0:221 [G] 4.93 0:170 [U] 70.22
L:36 [ASP] 0:2466 [G] 3.9 0:2428 [G] 70.22
L:37 [LYS] 0:918 [G] 4.68 0:925 [C] 90.61
L:37 [LYS] 0:919 [U] 2.67 0:924 [G] 90.61
L:37 [LYS] 0:920 [C] 2.71 90.61
L:37 [LYS] 0:2466 [G] 3.2 0:2428 [G] 90.61
L:37 [LYS] 0:2467 [A] 3.12 90.61
L:38 [HIS] 0:166 [A] 3.24 base/AA stacks 87.85
L:38 [HIS] 0:918 [G] 2.64 0:925 [C] base:BB 87.85
L:38 [HIS] 0:919 [U] 3.6 0:924 [G] 87.85
L:38 [HIS] 0:921 [G] 4.73 87.85
L:38 [HIS] 0:924 [G] 3.6 0:919 [U] 87.85
L:38 [HIS] 0:925 [C] 3.34 0:918 [G] 87.85
L:38 [HIS] 0:926 [A] 3.34 0:917 [U] 87.85
L:39 [GLU] 0:918 [G] 4.7 0:925 [C] 64.65
L:39 [GLU] 0:925 [C] 2.52 0:918 [G] sugar:SC 64.65
L:39 [GLU] 0:926 [A] 3.13 0:917 [U] 64.65
L:40 [PHE] 0:918 [G] 3.79 0:925 [C] 38.44
L:40 [PHE] 0:926 [A] 4.9 0:917 [U] 38.44
L:40 [PHE] 0:2396 [C] 3.72 38.44
L:40 [PHE] 0:2465 [A] 3.58 38.44
L:41 [HIS] 0:917 [U] 4.9 0:926 [A] 52.13
L:41 [HIS] 0:918 [G] 4.54 0:925 [C] 52.13
L:41 [HIS] 0:926 [A] 2.73 0:917 [U] base:SC 52.13
L:41 [HIS] 0:927 [U] 3.26 0:916 [A] 52.13
L:41 [HIS] 0:2396 [C] 4.59 52.13
L:42 [ASN] 0:927 [U] 4.12 0:916 [A] 38.32
L:46 [LEU] 0:221 [G] 3.59 0:170 [U] 54.93
L:46 [LEU] 0:2429 [A] 4.75 0:2461 [U] 54.93
L:46 [LEU] 0:2430 [A] 3.37 0:2460 [A] 54.93
L:47 [GLY] 0:220 [C] 4.13 88.03
L:47 [GLY] 0:221 [G] 2.89 0:170 [U] 88.03
L:47 [GLY] 0:2430 [A] 3.1 0:2460 [A] 88.03
L:47 [GLY] 0:2431 [C] 3.45 88.03
L:48 [LYS] 0:220 [C] 3.08 72.13
L:48 [LYS] 0:2430 [A] 4.29 0:2460 [A] 72.13
L:48 [LYS] 0:2431 [C] 2.92 72.13
L:48 [LYS] 0:2432 [C] 2.64 0:2459 [G] 72.13
L:48 [LYS] 0:2453 [G] 4.62 0:2439 [C] 72.13
L:48 [LYS] 0:2454 [C] 4.54 0:2438 [G] 72.13
L:49 [SER] 0:2453 [G] 4.15 0:2439 [C] 59.94
L:49 [SER] 0:2454 [C] 3.5 0:2438 [G] 59.94
L:50 [GLY] 0:692 [A] 3.57 92.44
L:50 [GLY] 0:2452 [G] 4.99 0:2440 [C] 92.44
L:50 [GLY] 0:2453 [G] 2.92 0:2439 [C] 92.44
L:50 [GLY] 0:2454 [C] 3.02 0:2438 [G] 92.44
L:51 [PHE] 0:692 [A] 2.95 sugar:BB, sugar:BB 85.24
L:51 [PHE] 0:693 [A] 3.33 85.24
L:51 [PHE] 0:2440 [C] 4.2 0:2452 [G] 85.24
L:51 [PHE] 0:2441 [U] 3.37 0:2451 [G] 85.24
L:51 [PHE] 0:2452 [G] 3.47 0:2440 [C] 85.24
L:51 [PHE] 0:2453 [G] 3.59 0:2439 [C] 85.24
L:52 [LYS] 0:214 [U] 4.83 0:226 [A] 56.33
L:52 [LYS] 0:215 [A] 2.58 0:225 [G] 56.33
L:52 [LYS] 0:216 [A] 2.85 0:224 [U] 56.33
L:53 [ARG] 0:693 [A] 3.26 74.02
L:53 [ARG] 0:694 [A] 2.94 0:691 [G] 74.02
L:53 [ARG] 0:2441 [U] 2.88 0:2451 [G] 74.02
L:53 [ARG] 0:2442 [G] 2.75 0:2450 [C] 74.02
L:54 [PRO] 0:2442 [G] 3.62 0:2450 [C] 53.1
L:54 [PRO] 0:2443 [C] 3.57 53.1
L:55 [GLN] 0:214 [U] 3.8 0:226 [A] sugar:SC 14.46
L:55 [GLN] 0:215 [A] 3.63 0:225 [G] 14.46
L:55 [GLN] 0:226 [A] 4.24 0:214 [U] 14.46
L:55 [GLN] 0:227 [A] 4.82 0:212 [A] 14.46
L:56 [LYS] 0:196 [G] 2.93 0:199 [A] sugar:SC 39.69
L:56 [LYS] 0:197 [C] 3.68 39.69
L:56 [LYS] 0:416 [G] 3.49 0:424 [C] 39.69
L:56 [LYS] 0:417 [G] 2.83 39.69
L:56 [LYS] 0:2443 [C] 3.03 39.69
L:56 [LYS] 0:2444 [U] 2.8 0:423 [A] 39.69
L:57 [VAL] 0:2442 [G] 3.32 0:2450 [C] 0.55
L:57 [VAL] 0:2443 [C] 3.52 0.55
L:58 [GLN] 0:694 [A] 4.99 0:691 [G] 32.34
L:59 [GLU] 0:695 [C] 4.59 0:690 [G] 25.48
L:61 [ALA] 0:697 [G] 4.89 0.0
L:63 [THR] 0:697 [G] 3.55 66.15
L:65 [ASP] 0:688 [A] 2.86 base:SC, base:SC 92.82
L:65 [ASP] 0:698 [A] 4.87 92.82
L:67 [ARG] 0:688 [A] 4.32 39.47
L:67 [ARG] 0:700 [A] 3.77 39.47
L:67 [ARG] 0:745 [G] 3.81 39.47
L:70 [ASP] 0:700 [A] 2.82 base:SC 54.49
L:71 [GLU] 0:700 [A] 3.27 42.51
L:71 [GLU] 0:745 [G] 2.69 base:SC, base:SC 42.51
L:99 [GLU] 0:686 [A] 4.19 62.71
L:99 [GLU] 0:687 [C] 3.82 base:SC 62.71
L:104 [ASP] 0:198 [A] 4.78 91.81
L:107 [LYS] 0:696 [C] 4.57 0:689 [G] 95.25
L:107 [LYS] 0:697 [G] 2.88 base:SC 95.25
L:109 [LEU] 0:688 [A] 3.68 93.42
L:109 [LEU] 0:697 [G] 3.53 93.42
L:109 [LEU] 0:698 [A] 3.41 93.42
L:110 [GLY] 0:688 [A] 4.58 91.45
L:110 [GLY] 0:698 [A] 2.63 91.45
L:110 [GLY] 0:699 [C] 3.65 0:727 [G] 91.45
L:111 [ALA] 0:688 [A] 3.75 23.73
L:111 [ALA] 0:698 [A] 3.91 23.73
L:111 [ALA] 0:699 [C] 3.4 0:727 [G] 23.73
L:112 [GLY] 0:699 [C] 2.87 0:727 [G] 96.87
L:112 [GLY] 0:700 [A] 3.53 96.87
L:113 [GLN] 0:699 [C] 4.66 0:727 [G] 42.56
L:113 [GLN] 0:700 [A] 2.54 base:BB, base:BB base/AA stacks 42.56
L:113 [GLN] 0:701 [U] 3.2 42.56
L:114 [VAL] 0:700 [A] 3.96 71.83
L:115 [ARG] 0:700 [A] 3.64 base/AA stacks 66.01
L:115 [ARG] 0:701 [U] 3.59 66.01
L:124 [ASP] 0:697 [G] 4.95 36.44
L:125 [PHE] 0:697 [G] 4.33 61.08
L:126 [SER] 0:697 [G] 3.49 92.19
L:126 [SER] 0:698 [A] 3.07 92.19
L:127 [GLU] 0:697 [G] 2.97 47.66
L:128 [GLY] 0:697 [G] 4.85 52.53
L:128 [GLY] 0:698 [A] 3.74 52.53
L:129 [ALA] 0:698 [A] 4.42 97.85
L:132 [LYS] 0:698 [A] 4.79 96.1
L:132 [LYS] 0:699 [C] 3.17 0:727 [G] 96.1
L:149 [ARG] 0:696 [C] 4.22 0:689 [G] 71.1
L:149 [ARG] 0:697 [G] 4.2 71.1

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group127 1YHQ_L_0 L: 50s ribosomal protein l15p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P12737 Ribosomal proteins L15p and L18e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_L_0 4Y4O_1P_1A 0.38 0.93 4.07 0.15 Ribosomal proteins L15p and L18e compare
1YHQ_L_0 6AZ3_L_2 0.48 0.82 2.32 0.27 Ribosomal proteins L15p and L18e compare
1YHQ_L_0 6AZ3_L_1 0.63 0.77 2.67 0.34 Ribosomal proteins L15p and L18e compare
1YHQ_L_0 6S0Z_J_A 0.41 0.93 4.03 0.15 Ribosomal proteins L15p and L18e compare
1YHQ_L_0 7O7Y_Ba_B5 0.62 0.93 2.36 0.35 Ribosomal proteins L15p and L18e compare
1YHQ_L_0 7RYG_K_A 0.38 0.91 4.41 0.15 Ribosomal proteins L15p and L18e compare
1VQ8_L_0 1YHQ_L_0 0.99 1.0 0.24 0.98 Ribosomal proteins L15p and L18e Archaeal large subunit ribosomal RNA compare