RNAprotDB

All interfaces > All interologs > Interface groups > group127 > 4Y4O_1P_1A

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

4Y4O_1P
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1P:2 [LYS] 1A:1248 [G] 3.96 1A:1288 [A] 0.0
1P:2 [LYS] 1A:1288 [A] 4.35 1A:1248 [G] 0.0
1P:3 [LEU] 1A:1247 [C] 3.56 1A:1289 [G] 0.0
1P:3 [LEU] 1A:1248 [G] 3.46 1A:1288 [A] 0.0
1P:3 [LEU] 1A:1289 [G] 4.1 1A:1247 [C] 0.0
1P:4 [SER] 1A:1248 [G] 4.81 1A:1288 [A] 0.0
1P:4 [SER] 1A:1288 [A] 3.23 1A:1248 [G] 0.0
1P:4 [SER] 1A:1289 [G] 3.1 1A:1247 [C] sugar:BB 0.0
1P:5 [ASP] 1A:1289 [G] 4.7 1A:1247 [C] 0.0
1P:6 [LEU] 1A:1289 [G] 4.24 1A:1247 [C] 0.0
1P:6 [LEU] 1A:1290 [G] 3.66 1A:1246 [C] 0.0
1P:7 [ARG] 1A:1289 [G] 2.75 1A:1247 [C] sugar:SC 0.0
1P:7 [ARG] 1A:1290 [G] 3.11 1A:1246 [C] 0.0
1P:8 [PRO] 1A:1290 [G] 3.44 1A:1246 [C] 54.78
1P:8 [PRO] 1A:1291 [G] 3.59 1A:1245 [C] 54.78
1P:9 [ASN] 1A:621 [G] 3.19 1A:706 [C] sugar:SC 40.98
1P:9 [ASN] 1A:622 [G] 2.95 1A:705 [C] 40.98
1P:10 [PRO] 1A:621 [G] 3.67 1A:706 [C] 2.78
1P:11 [GLY] 1A:620 [U] 3.55 1A:707 [G] 52.23
1P:11 [GLY] 1A:621 [G] 3.92 1A:706 [C] 52.23
1P:11 [GLY] 1A:707 [G] 4.49 1A:620 [U] 52.23
1P:12 [ALA] 1A:621 [G] 3.36 1A:706 [C] 71.1
1P:12 [ALA] 1A:707 [G] 2.84 1A:620 [U] base:BB 71.1
1P:12 [ALA] 1A:708 [C] 3.3 1A:619 [G] 71.1
1P:13 [ASN] 1A:707 [G] 4.92 1A:620 [U] 43.27
1P:13 [ASN] 1A:708 [C] 3.24 1A:619 [G] sugar:SC 43.27
1P:13 [ASN] 1A:709 [G] 4.85 1A:618 [C] 43.27
1P:13 [ASN] 1A:1291 [G] 2.6 1A:1245 [C] 43.27
1P:13 [ASN] 1A:1292 [A] 2.95 1A:1244 [U] 43.27
1P:14 [LYS] 1A:708 [C] 2.72 1A:619 [G] sugar:BB 63.65
1P:14 [LYS] 1A:709 [G] 3.18 1A:618 [C] 63.65
1P:14 [LYS] 1A:1238 [G] 2.73 1A:861 [C] 63.65
1P:14 [LYS] 1A:1239 [A] 4.41 1A:860 [U] 63.65
1P:15 [ARG] 1A:709 [G] 3.84 1A:618 [C] 42.29
1P:16 [ARG] 1A:611 [U] 4.33 1A:717 [A] 61.79
1P:16 [ARG] 1A:612 [C] 2.59 1A:715 [G] 61.79
1P:16 [ARG] 1A:709 [G] 2.69 1A:618 [C] 61.79
1P:16 [ARG] 1A:710 [G] 3.52 1A:617 [U] 61.79
1P:16 [ARG] 1A:1293 [A] 3.85 1A:1243 [U] 61.79
1P:17 [LYS] 1A:611 [U] 4.38 1A:717 [A] 78.67
1P:17 [LYS] 1A:709 [G] 4.06 1A:618 [C] 78.67
1P:17 [LYS] 1A:710 [G] 2.84 1A:617 [U] 78.67
1P:17 [LYS] 1A:711 [C] 4.03 1A:616 [G] 78.67
1P:17 [LYS] 1A:985 [G] 4.78 1A:885 [C] 78.67
1P:17 [LYS] 1A:1236 [G] 2.97 1A:863 [C] 78.67
1P:17 [LYS] 1A:1237 [G] 2.68 1A:862 [C] 78.67
1P:18 [ARG] 1A:859 [C] 4.94 1A:1240 [G] 95.87
1P:18 [ARG] 1A:1295 [U] 3.65 1A:1242 [G] base/AA stacks 95.87
1P:18 [ARG] 1A:1296 [G] 2.33 1A:1241 [C] base:SC 95.87
1P:19 [VAL] 1A:610 [C] 3.43 1A:857 [U] 73.18
1P:20 [GLY] 1A:857 [U] 2.79 1A:610 [C] sugar:BB 97.22
1P:20 [GLY] 1A:858 [U] 2.91 97.22
1P:21 [ARG] 1A:609 [A] 4.3 1A:1297 [C] 99.0
1P:21 [ARG] 1A:610 [C] 2.21 1A:857 [U] 99.0
1P:21 [ARG] 1A:857 [U] 4.21 1A:610 [C] 99.0
1P:21 [ARG] 1A:858 [U] 3.1 base/AA stacks 99.0
1P:21 [ARG] 1A:859 [C] 3.56 1A:1240 [G] 99.0
1P:21 [ARG] 1A:860 [U] 4.85 1A:1239 [A] 99.0
1P:21 [ARG] 1A:1296 [G] 3.14 1A:1241 [C] 99.0
1P:22 [GLY] 1A:857 [U] 4.85 1A:610 [C] 99.0
1P:22 [GLY] 1A:858 [U] 2.94 99.0
1P:22 [GLY] 1A:859 [C] 3.72 1A:1240 [G] 99.0
1P:22 [GLY] 1A:860 [U] 3.94 1A:1239 [A] 99.0
1P:23 [PRO] 1A:859 [C] 3.89 1A:1240 [G] 55.89
1P:23 [PRO] 1A:860 [U] 3.41 1A:1239 [A] 55.89
1P:24 [GLY] 1A:860 [U] 2.74 1A:1239 [A] 83.13
1P:24 [GLY] 1A:861 [C] 2.89 1A:1238 [G] base:BB 83.13
1P:24 [GLY] 1A:862 [C] 4.85 1A:1237 [G] 83.13
1P:25 [SER] 1A:859 [C] 4.69 1A:1240 [G] 92.61
1P:25 [SER] 1A:860 [U] 3.64 1A:1239 [A] 92.61
1P:25 [SER] 1A:861 [C] 3.98 1A:1238 [G] base:BB 92.61
1P:25 [SER] 1A:1237 [G] 4.91 1A:862 [C] 92.61
1P:25 [SER] 1A:1238 [G] 4.32 1A:861 [C] 92.61
1P:26 [GLY] 1A:861 [C] 5.0 1A:1238 [G] 88.68
1P:26 [GLY] 1A:1236 [G] 4.65 1A:863 [C] 88.68
1P:27 [HIS] 1A:858 [U] 4.86 50.77
1P:27 [HIS] 1A:1236 [G] 3.85 1A:863 [C] 50.77
1P:27 [HIS] 1A:1237 [G] 4.81 1A:862 [C] 50.77
1P:28 [GLY] 1A:858 [U] 3.13 97.05
1P:28 [GLY] 1A:1235 [G] 4.95 1A:864 [C] 97.05
1P:29 [LYS] 1A:589 [U] 3.14 1A:598 [A] 81.02
1P:29 [LYS] 1A:590 [A] 2.76 1A:2052 [A] 81.02
1P:29 [LYS] 1A:610 [C] 4.74 1A:857 [U] 81.02
1P:29 [LYS] 1A:857 [U] 2.92 1A:610 [C] 81.02
1P:29 [LYS] 1A:858 [U] 2.76 81.02
1P:30 [THR] 1A:610 [C] 4.24 1A:857 [U] 88.63
1P:30 [THR] 1A:857 [U] 3.87 1A:610 [C] 88.63
1P:30 [THR] 1A:1234 [A] 3.71 1A:865 [G] 88.63
1P:30 [THR] 1A:1235 [G] 2.45 1A:864 [C] 88.63
1P:31 [ALA] 1A:610 [C] 3.43 1A:857 [U] 76.01
1P:31 [ALA] 1A:857 [U] 4.55 1A:610 [C] 76.01
1P:31 [ALA] 1A:1235 [G] 4.31 1A:864 [C] 76.01
1P:32 [THR] 1A:986 [A] 4.17 87.73
1P:32 [THR] 1A:987 [G] 3.7 1A:884 [C] 87.73
1P:32 [THR] 1A:1235 [G] 3.04 1A:864 [C] 87.73
1P:32 [THR] 1A:1236 [G] 3.25 1A:863 [C] 87.73
1P:33 [ARG] 1A:610 [C] 2.54 1A:857 [U] base:SC, base:SC 92.19
1P:33 [ARG] 1A:718 [C] 2.94 1A:856 [G] base/AA stacks 92.19
1P:33 [ARG] 1A:987 [G] 3.84 1A:884 [C] 92.19
1P:33 [ARG] 1A:988 [U] 4.55 1A:883 [G] 92.19
1P:33 [ARG] 1A:1234 [A] 4.96 1A:865 [G] 92.19
1P:33 [ARG] 1A:1235 [G] 3.04 1A:864 [C] 92.19
1P:34 [GLY] 1A:987 [G] 3.39 1A:884 [C] 99.0
1P:34 [GLY] 1A:988 [U] 3.61 1A:883 [G] 99.0
1P:34 [GLY] 1A:1234 [A] 3.46 1A:865 [G] 99.0
1P:34 [GLY] 1A:1235 [G] 2.91 1A:864 [C] 99.0
1P:35 [HIS] 1A:590 [A] 3.23 1A:2052 [A] 56.97
1P:35 [HIS] 1A:591 [U] 4.75 56.97
1P:35 [HIS] 1A:987 [G] 4.28 1A:884 [C] 56.97
1P:35 [HIS] 1A:988 [U] 2.84 1A:883 [G] 56.97
1P:35 [HIS] 1A:1234 [A] 4.35 1A:865 [G] 56.97
1P:36 [LYS] 1A:590 [A] 3.45 1A:2052 [A] 98.02
1P:36 [LYS] 1A:591 [U] 3.0 98.02
1P:36 [LYS] 1A:853 [C] 4.97 1A:721 [G] 98.02
1P:36 [LYS] 1A:854 [U] 2.92 1A:720 [C] 98.02
1P:36 [LYS] 1A:855 [G] 3.38 1A:719 [C] 98.02
1P:36 [LYS] 1A:879 [G] 4.82 1A:872 [C] 98.02
1P:36 [LYS] 1A:990 [A] 4.96 98.02
1P:36 [LYS] 1A:2460 [A] 4.21 98.02
1P:37 [GLY] 1A:852 [G] 4.72 98.92
1P:37 [GLY] 1A:853 [C] 3.24 1A:721 [G] 98.92
1P:37 [GLY] 1A:854 [U] 4.88 1A:720 [C] 98.92
1P:37 [GLY] 1A:878 [G] 3.72 1A:873 [U] 98.92
1P:37 [GLY] 1A:879 [G] 3.68 1A:872 [C] 98.92
1P:38 [GLN] 1A:185 [A] 3.04 base:SC 90.51
1P:38 [GLN] 1A:852 [G] 3.07 base/AA stacks 90.51
1P:38 [GLN] 1A:853 [C] 3.42 1A:721 [G] 90.51
1P:38 [GLN] 1A:878 [G] 2.47 1A:873 [U] sugar:SC 90.51
1P:38 [GLN] 1A:879 [G] 3.15 1A:872 [C] 90.51
1P:39 [LYS] 1A:878 [G] 4.58 1A:873 [U] 75.91
1P:39 [LYS] 1A:879 [G] 2.99 1A:872 [C] 75.91
1P:39 [LYS] 1A:986 [A] 4.53 75.91
1P:39 [LYS] 1A:987 [G] 2.86 1A:884 [C] 75.91
1P:40 [SER] 1A:718 [C] 2.83 1A:856 [G] base:BB 80.63
1P:40 [SER] 1A:879 [G] 5.0 1A:872 [C] 80.63
1P:41 [ARG] 1A:718 [C] 3.9 1A:856 [G] 98.92
1P:41 [ARG] 1A:852 [G] 3.24 98.92
1P:41 [ARG] 1A:853 [C] 2.85 1A:721 [G] base/AA stacks 98.92
1P:41 [ARG] 1A:854 [U] 2.65 1A:720 [C] 98.92
1P:41 [ARG] 1A:855 [G] 4.61 1A:719 [C] 98.92
1P:42 [SER] 1A:717 [A] 3.26 1A:611 [U] 79.6
1P:42 [SER] 1A:718 [C] 3.37 1A:856 [G] 79.6
1P:42 [SER] 1A:719 [C] 2.57 1A:855 [G] 79.6
1P:42 [SER] 1A:852 [G] 4.59 79.6
1P:43 [GLY] 1A:717 [A] 3.43 1A:611 [U] 85.8
1P:43 [GLY] 1A:718 [C] 2.66 1A:856 [G] 85.8
1P:44 [GLY] 1A:718 [C] 4.35 1A:856 [G] 43.16
1P:45 [LEU] 1A:713 [G] 4.59 1A:614 [C] 51.04
1P:45 [LEU] 1A:879 [G] 3.43 1A:872 [C] 51.04
1P:45 [LEU] 1A:880 [U] 3.29 1A:871 [A] 51.04
1P:46 [LYS] 1A:183 [G] 4.44 1A:190 [C] 51.48
1P:46 [LYS] 1A:184 [A] 2.83 51.48
1P:46 [LYS] 1A:185 [A] 3.09 51.48
1P:46 [LYS] 1A:713 [G] 4.75 1A:614 [C] 51.48
1P:46 [LYS] 1A:880 [U] 4.89 1A:871 [A] 51.48
1P:47 [ASP] 1A:713 [G] 3.69 1A:614 [C] 41.54
1P:47 [ASP] 1A:714 [U] 4.73 1A:613 [A] 41.54
1P:48 [PRO] 1A:712 [C] 3.98 1A:615 [G] 60.3
1P:48 [PRO] 1A:713 [G] 3.23 1A:614 [C] 60.3
1P:48 [PRO] 1A:880 [U] 4.13 1A:871 [A] 60.3
1P:48 [PRO] 1A:881 [C] 4.83 1A:870 [G] 60.3
1P:49 [ARG] 1A:712 [C] 4.44 1A:615 [G] 44.62
1P:49 [ARG] 1A:713 [G] 3.78 1A:614 [C] 44.62
1P:50 [ARG] 1A:240 [A] 3.11 1A:236 [G] 33.91
1P:50 [ARG] 1A:241 [G] 2.84 1A:235 [C] 33.91
1P:51 [PHE] 1A:185 [A] 3.48 78.47
1P:51 [PHE] 1A:879 [G] 3.82 1A:872 [C] 78.47
1P:51 [PHE] 1A:880 [U] 3.23 1A:871 [A] 78.47
1P:52 [GLU] 1A:872 [C] 4.79 1A:879 [G] 82.46
1P:52 [GLU] 1A:879 [G] 3.04 1A:872 [C] base:BB 82.46
1P:52 [GLU] 1A:880 [U] 3.33 1A:871 [A] 82.46
1P:52 [GLU] 1A:2370 [G] 4.94 82.46
1P:53 [GLY] 1A:185 [A] 4.03 88.56
1P:53 [GLY] 1A:873 [U] 2.75 1A:878 [G] sugar:BB 88.56
1P:53 [GLY] 1A:875 [U] 3.8 88.56
1P:53 [GLY] 1A:878 [G] 2.77 1A:873 [U] base:BB 88.56
1P:53 [GLY] 1A:879 [G] 3.5 1A:872 [C] 88.56
1P:53 [GLY] 1A:880 [U] 4.48 1A:871 [A] 88.56
1P:54 [GLY] 1A:185 [A] 4.44 87.23
1P:54 [GLY] 1A:873 [U] 3.1 1A:878 [G] 87.23
1P:54 [GLY] 1A:875 [U] 4.68 87.23
1P:54 [GLY] 1A:878 [G] 4.47 1A:873 [U] 87.23
1P:55 [ARG] 1A:871 [A] 3.74 1A:880 [U] 81.39
1P:55 [ARG] 1A:872 [C] 2.9 1A:879 [G] base:SC 81.39
1P:55 [ARG] 1A:873 [U] 3.08 1A:878 [G] 81.39
1P:55 [ARG] 1A:879 [G] 3.88 1A:872 [C] 81.39
1P:55 [ARG] 1A:880 [U] 2.57 1A:871 [A] base:SC 81.39
1P:55 [ARG] 1A:2370 [G] 3.5 81.39
1P:55 [ARG] 1A:2440 [G] 3.98 81.39
1P:56 [SER] 1A:2404 [A] 4.16 1A:2436 [C] 65.16
1P:56 [SER] 1A:2440 [G] 2.98 sugar:SC 65.16
1P:56 [SER] 1A:2441 [G] 2.77 1A:2403 [G] base:SC 65.16
1P:58 [THR] 1A:2371 [C] 3.66 63.08
1P:58 [THR] 1A:2372 [A] 4.83 63.08
1P:60 [MET] 1A:239 [G] 3.52 1A:189 [U] 70.38
1P:60 [MET] 1A:240 [A] 3.75 1A:236 [G] 70.38
1P:60 [MET] 1A:2404 [A] 4.8 1A:2436 [C] 70.38
1P:60 [MET] 1A:2405 [A] 2.49 1A:2434 [A] sugar:BB 70.38
1P:61 [ARG] 1A:2372 [A] 2.91 sugar:SC 79.86
1P:61 [ARG] 1A:2404 [A] 2.73 1A:2436 [C] sugar:BB 79.86
1P:61 [ARG] 1A:2405 [A] 3.66 1A:2434 [A] 79.86
1P:61 [ARG] 1A:2440 [G] 3.34 base/AA stacks 79.86
1P:61 [ARG] 1A:2441 [G] 2.72 1A:2403 [G] base:SC, base:SC 79.86
1P:62 [LEU] 1A:2372 [A] 4.56 61.29
1P:62 [LEU] 1A:2404 [A] 4.83 1A:2436 [C] 61.29
1P:62 [LEU] 1A:2405 [A] 3.69 1A:2434 [A] 61.29
1P:62 [LEU] 1A:2406 [C] 4.83 61.29
1P:63 [PRO] 1A:2405 [A] 3.58 1A:2434 [A] 90.66
1P:63 [PRO] 1A:2406 [C] 3.69 90.66
1P:64 [LYS] 1A:238 [C] 2.7 sugar:SC 66.6
1P:64 [LYS] 1A:2405 [A] 4.11 1A:2434 [A] 66.6
1P:64 [LYS] 1A:2406 [C] 2.78 66.6
1P:64 [LYS] 1A:2407 [C] 3.68 1A:2433 [G] 66.6
1P:64 [LYS] 1A:2428 [C] 4.39 1A:2412 [G] 66.6
1P:65 [ARG] 1A:655 [G] 4.14 1A:658 [A] 66.54
1P:65 [ARG] 1A:656 [A] 2.23 66.54
1P:65 [ARG] 1A:2427 [G] 4.75 1A:2413 [U] 66.54
1P:65 [ARG] 1A:2428 [C] 2.88 1A:2412 [G] 66.54
1P:65 [ARG] 1A:2429 [C] 2.5 1A:2411 [G] 66.54
1P:66 [GLY] 1A:656 [A] 3.25 91.74
1P:66 [GLY] 1A:2427 [G] 3.46 1A:2413 [U] 91.74
1P:66 [GLY] 1A:2428 [C] 2.9 1A:2412 [G] 91.74
1P:67 [MET] 1A:656 [A] 2.86 sugar:BB 82.89
1P:67 [MET] 1A:657 [A] 3.08 82.89
1P:67 [MET] 1A:2415 [C] 4.62 1A:2426 [G] 82.89
1P:67 [MET] 1A:2416 [C] 4.24 1A:2425 [G] 82.89
1P:67 [MET] 1A:2426 [G] 3.48 1A:2415 [C] 82.89
1P:67 [MET] 1A:2427 [G] 3.2 1A:2413 [U] 82.89
1P:68 [GLN] 1A:234 [G] 3.64 1A:242 [C] 51.4
1P:69 [GLY] 1A:234 [G] 3.87 1A:242 [C] 72.47
1P:69 [GLY] 1A:235 [C] 4.14 1A:241 [G] 72.47
1P:70 [GLN] 1A:234 [G] 3.48 1A:242 [C] 41.79
1P:70 [GLN] 1A:235 [C] 3.54 1A:241 [G] 41.79
1P:70 [GLN] 1A:416 [G] 3.32 41.79
1P:70 [GLN] 1A:2418 [U] 2.99 base:SC 41.79
1P:70 [GLN] 1A:2425 [G] 4.66 1A:2416 [C] 41.79
1P:70 [GLN] 1A:2426 [G] 3.7 1A:2415 [C] sugar:SC 41.79
1P:71 [VAL] 1A:234 [G] 3.25 1A:242 [C] 65.38
1P:71 [VAL] 1A:235 [C] 3.32 1A:241 [G] 65.38
1P:71 [VAL] 1A:411 [U] 4.62 65.38
1P:71 [VAL] 1A:412 [C] 3.16 1A:438 [G] 65.38
1P:71 [VAL] 1A:416 [G] 2.75 base:BB, base:BB, base:BB 65.38
1P:71 [VAL] 1A:417 [A] 3.44 65.38
1P:71 [VAL] 1A:438 [G] 3.31 1A:412 [C] 65.38
1P:71 [VAL] 1A:2418 [U] 4.11 65.38
1P:72 [PRO] 1A:233 [A] 4.4 1A:243 [G] 72.59
1P:72 [PRO] 1A:416 [G] 3.84 72.59
1P:72 [PRO] 1A:438 [G] 3.5 1A:412 [C] 72.59
1P:72 [PRO] 1A:2418 [U] 3.63 72.59
1P:73 [GLY] 1A:233 [A] 3.32 1A:243 [G] 29.48
1P:73 [GLY] 1A:234 [G] 3.25 1A:242 [C] 29.48
1P:73 [GLY] 1A:2418 [U] 2.45 base:BB 29.48
1P:74 [GLU] 1A:233 [A] 2.92 1A:243 [G] sugar:BB 43.3
1P:74 [GLU] 1A:234 [G] 3.55 1A:242 [C] 43.3
1P:74 [GLU] 1A:2418 [U] 3.38 43.3
1P:75 [ILE] 1A:2416 [C] 3.81 1A:2425 [G] 10.24
1P:75 [ILE] 1A:2417 [G] 3.73 1A:2424 [A] 10.24
1P:75 [ILE] 1A:2418 [U] 3.45 10.24
1P:76 [LYS] 1A:216 [A] 3.37 0.0
1P:76 [LYS] 1A:217 [A] 2.9 1A:215 [G] 0.0
1P:77 [ARG] 1A:657 [A] 4.08 32.38
1P:77 [ARG] 1A:658 [A] 3.12 1A:655 [G] 32.38
1P:77 [ARG] 1A:659 [C] 4.78 1A:654 [G] 32.38
1P:77 [ARG] 1A:2416 [C] 2.91 1A:2425 [G] 32.38
1P:77 [ARG] 1A:2417 [G] 3.47 1A:2424 [A] 32.38
1P:79 [ARG] 1A:658 [A] 3.84 1A:655 [G] 44.94
1P:80 [TYR] 1A:661 [G] 4.69 32.41
1P:81 [GLN] 1A:651 [U] 2.98 14.6
1P:81 [GLN] 1A:661 [G] 4.91 14.6
1P:82 [GLY] 1A:661 [G] 4.39 45.96
1P:84 [ASN] 1A:652 [A] 2.88 base:SC, base:SC 75.84
1P:84 [ASN] 1A:662 [A] 4.77 1A:676 [G] 75.84
1P:86 [LYS] 1A:651 [U] 4.98 39.0
1P:86 [LYS] 1A:652 [A] 3.89 39.0
1P:87 [ASP] 1A:626 [A] 4.89 1A:650 [G] 3.01
1P:87 [ASP] 1A:651 [U] 4.29 3.01
1P:87 [ASP] 1A:652 [A] 4.9 3.01
1P:90 [ARG] 1A:626 [A] 3.29 1A:650 [G] sugar:SC 7.21
1P:90 [ARG] 1A:627 [G] 2.69 1A:649 [C] 7.21
1P:103 [ALA] 1A:627 [G] 3.93 1A:649 [C] 46.08
1P:104 [GLY] 1A:627 [G] 4.0 1A:649 [C] 60.71
1P:104 [GLY] 1A:650 [G] 2.79 1A:626 [A] base:BB 60.71
1P:104 [GLY] 1A:651 [U] 3.85 60.71
1P:105 [LEU] 1A:626 [A] 4.17 1A:650 [G] 57.35
1P:105 [LEU] 1A:650 [G] 4.9 1A:626 [A] 57.35
1P:105 [LEU] 1A:651 [U] 2.9 base:BB 57.35
1P:106 [LEU] 1A:651 [U] 4.98 73.43
1P:107 [LYS] 1A:649 [C] 3.64 1A:627 [G] 41.13
1P:107 [LYS] 1A:650 [G] 3.14 1A:626 [A] base:SC 41.13
1P:107 [LYS] 1A:651 [U] 3.08 41.13
1P:108 [LYS] 1A:645 [G] 4.51 42.75
1P:108 [LYS] 1A:646 [A] 2.69 1A:630 [U] 42.75
1P:108 [LYS] 1A:647 [G] 2.67 1A:629 [U] 42.75
1P:113 [LYS] 1A:660 [C] 4.1 1A:653 [G] 94.17
1P:113 [LYS] 1A:661 [G] 2.84 94.17
1P:115 [LEU] 1A:652 [A] 3.71 82.7
1P:115 [LEU] 1A:661 [G] 3.48 82.7
1P:115 [LEU] 1A:662 [A] 3.5 1A:676 [G] 82.7
1P:116 [GLY] 1A:652 [A] 4.75 63.57
1P:116 [GLY] 1A:661 [G] 4.92 63.57
1P:116 [GLY] 1A:662 [A] 2.61 1A:676 [G] 63.57
1P:117 [GLU] 1A:652 [A] 4.31 32.53
1P:117 [GLU] 1A:662 [A] 3.55 1A:676 [G] sugar:SC 32.53
1P:117 [GLU] 1A:677 [C] 3.83 32.53
1P:130 [PHE] 1A:661 [G] 4.19 40.77
1P:131 [SER] 1A:661 [G] 3.33 94.52
1P:131 [SER] 1A:662 [A] 2.74 1A:676 [G] 94.52
1P:132 [LYS] 1A:660 [C] 3.23 1A:653 [G] 55.45
1P:132 [LYS] 1A:661 [G] 2.74 55.45
1P:132 [LYS] 1A:664 [U] 4.83 1A:674 [G] 55.45
1P:133 [SER] 1A:661 [G] 4.25 71.04
1P:133 [SER] 1A:662 [A] 2.28 1A:676 [G] 71.04
1P:134 [ALA] 1A:662 [A] 4.92 1A:676 [G] 93.89

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group127 4Y4O_1P_1A 1P: 50s ribosomal protein l15, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHQ7 Ribosomal proteins L15p and L18e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_L_0 4Y4O_1P_1A 0.38 0.93 4.07 0.15 Ribosomal proteins L15p and L18e compare
1VQ8_L_0 4Y4O_1P_1A 0.38 0.93 4.18 0.15 Ribosomal proteins L15p and L18e compare
4Y4O_1P_1A 6AZ3_L_1 0.43 0.71 3.9 0.19 Ribosomal proteins L15p and L18e compare
4Y4O_1P_1A 7OF0_M_A 0.69 0.89 2.15 0.33 Ribosomal proteins L15p and L18e Bacterial large subunit ribosomal RNA compare
4Y4O_1P_1A 7RYG_K_A 0.71 0.96 2.76 0.39 Ribosomal proteins L15p and L18e Bacterial large subunit ribosomal RNA compare
4Y4O_1P_1A 7K00_k_a 0.76 0.96 2.47 0.5 Ribosomal proteins L15p and L18e Bacterial large subunit ribosomal RNA compare
4Y4O_1P_1A 6AZ3_L_2 0.29 0.83 5.19 0.0 Ribosomal proteins L15p and L18e compare
4Y4O_1P_1A 6S0Z_J_A 0.72 0.96 2.46 0.46 Ribosomal proteins L15p and L18e Bacterial large subunit ribosomal RNA compare