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All interfaces > All interologs > Interface groups > group127 > 6AZ3_L_1

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Licorice
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Licorice
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Rim - Core

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6AZ3_L
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
L:2 [PRO] 1:843 [C] 3.41 1:702 [A] 34.4
L:2 [PRO] 1:844 [C] 2.82 1:701 [G] 34.4
L:2 [PRO] 1:1519 [U] 3.71 1:1471 [G] 34.4
L:2 [PRO] 1:1520 [A] 3.05 1:1470 [U] 34.4
L:3 [THR] 1:694 [U] 4.63 1:852 [A] 78.7
L:3 [THR] 1:695 [OMC] 3.33 1:850 [G] 78.7
L:3 [THR] 1:844 [C] 4.96 1:701 [G] 78.7
L:3 [THR] 1:1520 [A] 2.91 1:1470 [U] 78.7
L:3 [THR] 1:1522 [U] 2.36 base:SC 78.7
L:4 [ARG] 1:1518 [C] 2.99 1:1472 [G] base/AA stacks 53.6
L:4 [ARG] 1:1519 [U] 3.0 1:1471 [G] base/AA stacks 53.6
L:4 [ARG] 1:1520 [A] 4.3 1:1470 [U] 53.6
L:4 [ARG] 1:1522 [U] 3.18 base:BB 53.6
L:5 [PHE] 1:843 [C] 3.81 1:702 [A] 38.5
L:5 [PHE] 1:844 [C] 3.31 1:701 [G] 38.5
L:5 [PHE] 1:1518 [C] 4.78 1:1472 [G] 38.5
L:5 [PHE] 1:1519 [U] 4.43 1:1471 [G] 38.5
L:6 [LYS] 1:694 [U] 3.79 1:852 [A] 80.6
L:6 [LYS] 1:695 [OMC] 3.21 1:850 [G] 80.6
L:6 [LYS] 1:844 [C] 3.29 1:701 [G] 80.6
L:6 [LYS] 1:845 [OMU] 3.67 1:700 [A] 80.6
L:7 [LYS] 1:844 [C] 4.11 1:701 [G] 83.1
L:7 [LYS] 1:845 [OMU] 2.9 1:700 [A] 83.1
L:7 [LYS] 1:846 [G] 3.31 1:699 [C] 83.1
L:7 [LYS] 1:1462 [A] 3.07 1:999 [U] 83.1
L:7 [LYS] 1:1463 [U] 3.28 1:998 [A] 83.1
L:8 [CYS] 1:693 [G] 3.75 1:993 [U] 56.9
L:8 [CYS] 1:694 [U] 3.27 1:852 [A] 56.9
L:8 [CYS] 1:845 [OMU] 4.72 1:700 [A] 56.9
L:9 [ARG] 1:995 [C] 2.83 1:1467 [G] base:BB 77.5
L:9 [ARG] 1:1522 [U] 3.53 base/AA stacks 77.5
L:9 [ARG] 1:1523 [G] 2.95 1:1468 [C] base:SC 77.5
L:10 [HIS] 1:995 [C] 3.68 1:1467 [G] 80.7
L:10 [HIS] 1:996 [A] 3.67 1:1465 [U] 80.7
L:10 [HIS] 1:997 [C] 4.06 1:1464 [G] 80.7
L:10 [HIS] 1:998 [A] 4.99 1:1463 [U] 80.7
L:10 [HIS] 1:1463 [U] 3.06 1:998 [A] 80.7
L:10 [HIS] 1:1464 [G] 2.42 1:997 [C] base:SC 80.7
L:10 [HIS] 1:1465 [U] 3.25 1:996 [A] 80.7
L:11 [GLN] 1:693 [G] 4.88 1:993 [U] 2.6
L:11 [GLN] 1:994 [U] 4.65 2.6
L:11 [GLN] 1:1462 [A] 4.01 1:999 [U] 2.6
L:12 [ARG] 1:693 [G] 3.06 1:993 [U] 91.3
L:12 [ARG] 1:993 [U] 4.65 1:693 [G] 91.3
L:12 [ARG] 1:994 [U] 3.21 base/AA stacks 91.3
L:12 [ARG] 1:995 [C] 3.51 1:1467 [G] 91.3
L:12 [ARG] 1:996 [A] 4.77 1:1465 [U] 91.3
L:12 [ARG] 1:1523 [G] 3.64 1:1468 [C] 91.3
L:13 [GLY] 1:993 [U] 4.93 1:693 [G] 90.6
L:13 [GLY] 1:994 [U] 2.96 90.6
L:13 [GLY] 1:995 [C] 4.16 1:1467 [G] 90.6
L:13 [GLY] 1:996 [A] 4.95 1:1465 [U] 90.6
L:14 [SER] 1:994 [U] 3.02 82.5
L:15 [THR] 1:672 [U] 4.74 1:681 [A2M] 86.7
L:15 [THR] 1:993 [U] 3.06 1:693 [G] 86.7
L:15 [THR] 1:994 [U] 2.59 86.7
L:16 [PHE] 1:672 [U] 4.31 1:681 [A2M] 81.4
L:16 [PHE] 1:673 [C] 3.61 81.4
L:16 [PHE] 1:693 [G] 4.16 1:993 [U] 81.4
L:16 [PHE] 1:993 [U] 3.27 1:693 [G] 81.4
L:16 [PHE] 1:1460 [A] 4.44 1:1001 [G] 81.4
L:16 [PHE] 1:1461 [G] 3.57 1:1000 [C] 81.4
L:17 [CYS] 1:693 [G] 3.38 1:993 [U] 68.2
L:17 [CYS] 1:993 [U] 4.01 1:693 [G] 68.2
L:17 [CYS] 1:1461 [G] 4.48 1:1000 [C] 68.2
L:17 [CYS] 1:1462 [A] 4.66 1:999 [U] 68.2
L:18 [GLY] 1:1169 [A] 3.59 91.1
L:18 [GLY] 1:1170 [G] 3.57 1:1020 [C] 91.1
L:18 [GLY] 1:1461 [G] 3.26 1:1000 [C] 91.1
L:18 [GLY] 1:1462 [A] 3.31 1:999 [U] 91.1
L:19 [TYR] 1:693 [G] 3.24 1:993 [U] 52.9
L:19 [TYR] 1:1170 [G] 3.47 1:1020 [C] 52.9
L:19 [TYR] 1:1171 [U] 3.95 1:1019 [G] 52.9
L:19 [TYR] 1:1460 [A] 4.93 1:1001 [G] 52.9
L:19 [TYR] 1:1461 [G] 3.4 1:1000 [C] 52.9
L:20 [GLY] 1:1170 [G] 3.88 1:1020 [C] 92.4
L:20 [GLY] 1:1171 [U] 4.05 1:1019 [G] 92.4
L:20 [GLY] 1:1460 [A] 3.37 1:1001 [G] 92.4
L:20 [GLY] 1:1461 [G] 3.33 1:1000 [C] 92.4
L:21 [ARG] 1:672 [U] 3.08 1:681 [A2M] 63.3
L:21 [ARG] 1:673 [C] 2.58 63.3
L:21 [ARG] 1:674 [U] 4.08 2:618 [A] 63.3
L:21 [ARG] 1:1171 [U] 4.28 1:1019 [G] 63.3
L:21 [ARG] 1:1459 [U] 4.18 1:1002 [A] 63.3
L:21 [ARG] 1:1460 [A] 3.48 1:1001 [G] 63.3
L:22 [VAL] 1:673 [C] 4.95 61.1
L:22 [VAL] 1:674 [U] 3.47 2:618 [A] 61.1
L:22 [VAL] 1:1004 [G] 4.9 1:1199 [G] 61.1
L:22 [VAL] 1:1171 [U] 3.51 1:1019 [G] 61.1
L:22 [VAL] 1:1172 [G] 3.38 61.1
L:23 [GLY] 1:1170 [G] 4.64 1:1020 [C] 83.9
L:23 [GLY] 1:1171 [U] 2.66 1:1019 [G] 83.9
L:23 [GLY] 1:1172 [G] 4.83 83.9
L:24 [LYS] 1:673 [C] 3.53 80.9
L:24 [LYS] 1:990 [U] 4.69 1:855 [C] 80.9
L:24 [LYS] 1:991 [G] 3.89 1:854 [C] 80.9
L:24 [LYS] 1:1171 [U] 4.94 1:1019 [G] 80.9
L:25 [HIS] 1:693 [G] 3.19 1:993 [U] base:SC 88.0
L:25 [HIS] 1:853 [C] 2.71 1:992 [G] base:BB base/AA stacks 88.0
L:25 [HIS] 1:854 [C] 4.95 1:991 [G] 88.0
L:25 [HIS] 1:992 [G] 4.88 1:853 [C] 88.0
L:26 [ARG] 1:853 [C] 4.9 1:992 [G] 95.4
L:26 [ARG] 1:988 [G] 3.55 95.4
L:26 [ARG] 1:989 [C] 2.76 1:856 [OMG] base/AA stacks 95.4
L:26 [ARG] 1:990 [U] 2.14 1:855 [C] 95.4
L:26 [ARG] 1:991 [G] 4.57 1:854 [C] 95.4
L:27 [LYS] 1:852 [A] 3.46 1:694 [U] 77.0
L:27 [LYS] 1:853 [C] 5.0 1:992 [G] 77.0
L:27 [LYS] 1:855 [C] 4.93 1:990 [U] 77.0
L:27 [LYS] 1:856 [OMG] 3.58 1:989 [C] base:SC 77.0
L:27 [LYS] 1:987 [A] 3.27 77.0
L:27 [LYS] 1:988 [G] 2.74 77.0
L:27 [LYS] 1:989 [C] 4.02 1:856 [OMG] 77.0
L:28 [HIS] 1:38 [A] 4.34 72.2
L:28 [HIS] 1:849 [U] 3.55 1:696 [A] 72.2
L:28 [HIS] 1:850 [G] 4.16 1:695 [OMC] 72.2
L:28 [HIS] 1:852 [A] 4.62 1:694 [U] 72.2
L:28 [HIS] 1:987 [A] 3.04 72.2
L:28 [HIS] 1:988 [G] 3.33 72.2
L:29 [GLU] 1:38 [A] 2.84 base:BB 80.2
L:29 [GLU] 1:988 [G] 3.6 80.2
L:29 [GLU] 1:1014 [G] 2.4 1:1009 [C] sugar:BB 80.2
L:29 [GLU] 1:1015 [G] 3.42 1:1008 [C] 80.2
L:29 [GLU] 1:1016 [A] 4.61 1:1007 [U] 80.2
L:30 [SER] 1:38 [A] 3.43 93.0
L:30 [SER] 1:848 [U] 4.37 1:697 [A2M] 93.0
L:30 [SER] 1:1014 [G] 4.6 1:1009 [C] 93.0
L:30 [SER] 1:1015 [G] 3.24 1:1008 [C] 93.0
L:30 [SER] 1:1016 [A] 4.59 1:1007 [U] 93.0
L:31 [GLY] 1:37 [A] 3.71 96.2
L:31 [GLY] 1:38 [A] 3.35 96.2
L:31 [GLY] 1:849 [U] 3.53 1:696 [A] 96.2
L:32 [ARG] 1:35 [U] 4.12 1:44 [U] 69.1
L:32 [ARG] 1:36 [U] 3.2 1:43 [A] 69.1
L:32 [ARG] 1:37 [A] 3.14 69.1
L:32 [ARG] 1:94 [A] 4.5 1:90 [G] 69.1
L:32 [ARG] 1:95 [G] 4.42 1:89 [C] 69.1
L:32 [ARG] 1:848 [U] 4.59 1:697 [A2M] 69.1
L:32 [ARG] 1:849 [U] 3.26 1:696 [A] 69.1
L:32 [ARG] 1:850 [G] 2.6 1:695 [OMC] 69.1
L:32 [ARG] 1:852 [A] 4.41 1:694 [U] 69.1
L:32 [ARG] 1:986 [U] 3.44 1:857 [A] 69.1
L:32 [ARG] 1:987 [A] 3.35 69.1
L:33 [GLY] 1:94 [A] 4.69 1:90 [G] 91.6
L:33 [GLY] 1:95 [G] 3.3 1:89 [C] 91.6
L:33 [GLY] 1:848 [U] 3.43 1:697 [A2M] 91.6
L:33 [GLY] 1:849 [U] 2.98 1:696 [A] 91.6
L:34 [ASN] 1:94 [A] 3.36 1:90 [G] 51.2
L:34 [ASN] 1:95 [G] 2.81 1:89 [C] 51.2
L:35 [ALA] 1:37 [A] 3.65 89.4
L:35 [ALA] 1:38 [A] 3.61 89.4
L:35 [ALA] 1:94 [A] 4.15 1:90 [G] 89.4
L:35 [ALA] 1:95 [G] 4.79 1:89 [C] 89.4
L:36 [GLY] 1:37 [A] 4.33 94.2
L:36 [GLY] 1:38 [A] 2.59 94.2
L:37 [GLY] 1:38 [A] 4.63 58.9
L:39 [HIS] 1:38 [A] 4.26 78.8
L:39 [HIS] 1:1009 [C] 3.33 1:1014 [G] 78.8
L:40 [HIS] 1:38 [A] 3.87 base/AA stacks 86.3
L:40 [HIS] 1:1009 [C] 3.73 1:1014 [G] 86.3
L:40 [HIS] 1:1014 [G] 3.92 1:1009 [C] 86.3
L:40 [HIS] 1:1015 [G] 3.0 1:1008 [C] base:BB 86.3
L:40 [HIS] 1:1016 [A] 3.56 1:1007 [U] 86.3
L:41 [HIS] 1:1015 [G] 3.01 1:1008 [C] 73.1
L:41 [HIS] 1:1016 [A] 3.07 1:1007 [U] sugar:SC 73.1
L:42 [ARG] 1:1008 [C] 4.66 1:1015 [G] 39.6
L:42 [ARG] 1:1016 [A] 4.8 1:1007 [U] 39.6
L:43 [ILE] 1:1007 [U] 3.46 1:1016 [A] 63.0
L:43 [ILE] 1:1008 [C] 4.09 1:1015 [G] 63.0
L:43 [ILE] 1:1016 [A] 3.59 1:1007 [U] 63.0
L:43 [ILE] 1:1017 [U] 3.62 1:1006 [U] 63.0
L:44 [ASN] 1:1016 [A] 3.17 1:1007 [U] sugar:BB 7.2
L:44 [ASN] 1:1017 [U] 4.0 1:1006 [U] 7.2
L:45 [PHE] 1:94 [A] 4.87 1:90 [G] 40.3
L:47 [LYS] 1:1017 [U] 3.25 1:1006 [U] 71.9
L:47 [LYS] 1:1018 [A] 2.44 1:1005 [U] 71.9
L:48 [TYR] 1:1017 [U] 3.94 1:1006 [U] 39.4
L:48 [TYR] 1:1018 [A] 3.36 1:1005 [U] 39.4
L:52 [TYR] 1:94 [A] 3.48 1:90 [G] 61.9
L:53 [PHE] 1:93 [G] 3.17 1:42 [U] 63.7
L:53 [PHE] 1:94 [A] 3.86 1:90 [G] 63.7
L:54 [GLY] 1:92 [C] 3.87 89.5
L:54 [GLY] 1:93 [G] 3.43 1:42 [U] 89.5
L:55 [LYS] 1:92 [C] 3.32 73.7
L:56 [LEU] 1:747 [A] 4.11 50.4
L:57 [GLY] 1:747 [A] 3.29 91.9
L:58 [MET] 1:88 [G] 4.3 1:96 [C] 86.5
L:58 [MET] 1:747 [A] 3.23 sugar:BB 86.5
L:58 [MET] 1:748 [A] 4.08 86.5
L:59 [ASP] 1:88 [G] 3.21 1:96 [C] 59.1
L:59 [ASP] 1:89 [C] 4.09 1:95 [G] 59.1
L:59 [ASP] 1:343 [U] 5.0 59.1
L:60 [HIS] 1:87 [A] 2.79 1:97 [G] sugar:BB 57.5
L:60 [HIS] 1:88 [G] 2.73 1:96 [C] 57.5
L:61 [TYR] 1:87 [A] 4.35 1:97 [G] 57.1
L:61 [TYR] 1:88 [G] 3.72 1:96 [C] 57.1
L:61 [TYR] 1:89 [C] 3.75 1:95 [G] 57.1
L:61 [TYR] 1:320 [G] 3.45 base/AA stacks 57.1
L:61 [TYR] 1:321 [A] 4.37 57.1
L:61 [TYR] 1:342 [G] 3.26 57.1
L:61 [TYR] 1:343 [U] 3.73 57.1
L:62 [HIS] 1:68 [A] 3.43 1:70 [C] 55.5
L:62 [HIS] 1:87 [A] 3.71 1:97 [G] 55.5
L:62 [HIS] 1:99 [A] 4.29 1:83 [A] 55.5
L:62 [HIS] 1:342 [G] 3.3 base/AA stacks 55.5
L:63 [ARG] 1:83 [A] 4.57 1:99 [A] 22.1
L:63 [ARG] 1:85 [U] 3.49 1:98 [A] 22.1
L:63 [ARG] 1:86 [G] 3.46 22.1
L:63 [ARG] 1:87 [A] 3.16 1:97 [G] sugar:BB 22.1
L:63 [ARG] 1:98 [A] 4.65 1:85 [U] 22.1
L:63 [ARG] 1:99 [A] 3.89 1:83 [A] 22.1
L:64 [LYS] 1:68 [A] 3.57 1:70 [C] 7.8
L:64 [LYS] 1:69 [A2M] 2.54 7.8
L:65 [LYS] 1:82 [C] 4.8 1:100 [G] 57.3
L:65 [LYS] 1:83 [A] 2.55 1:99 [A] 57.3
L:65 [LYS] 1:86 [G] 3.07 57.3
L:66 [ASN] 1:69 [A2M] 4.74 67.6
L:66 [ASN] 1:100 [G] 3.47 1:82 [C] 67.6
L:66 [ASN] 1:101 [A] 3.44 1:81 [U] 67.6
L:67 [PRO] 1:69 [A2M] 3.34 9.7
L:70 [LYS] 1:751 [G] 3.75 1:744 [C] 9.0
L:70 [LYS] 1:752 [G] 4.49 9.0
L:72 [THR] 1:742 [U] 4.47 58.6
L:72 [THR] 1:743 [A] 4.71 58.6
L:72 [THR] 1:752 [G] 3.29 58.6
L:74 [ASN] 1:743 [A] 3.01 base:SC, base:SC 94.9
L:77 [ASN] 1:709 [A] 4.35 1:741 [G] 52.9
L:77 [ASN] 1:836 [G] 4.09 52.9
L:80 [ARG] 1:709 [A] 3.35 1:741 [G] 56.2
L:80 [ARG] 1:710 [G] 4.0 1:740 [C] 56.2
L:80 [ARG] 1:742 [U] 3.64 56.2
L:92 [LYS] 1:767 [U] 4.26 1:755 [A] 44.7
L:102 [GLN] 1:71 [C] 3.72 15.2
L:106 [TYR] 1:741 [G] 4.73 1:709 [A] 60.6
L:106 [TYR] 1:742 [U] 3.32 base:SC 60.6
L:108 [LYS] 1:751 [G] 4.54 1:744 [C] 97.7
L:108 [LYS] 1:752 [G] 2.75 base:SC 97.7
L:110 [LEU] 1:743 [A] 3.46 87.4
L:110 [LEU] 1:752 [G] 3.4 87.4
L:110 [LEU] 1:753 [A] 3.25 87.4
L:111 [GLY] 1:743 [A] 4.7 88.0
L:111 [GLY] 1:753 [A] 3.07 88.0
L:111 [GLY] 1:754 [G] 2.89 1:768 [C] 88.0
L:112 [ASN] 1:743 [A] 3.47 32.2
L:112 [ASN] 1:753 [A] 3.16 32.2
L:112 [ASN] 1:754 [G] 3.33 1:768 [C] 32.2
L:112 [ASN] 1:833 [U] 4.64 1:812 [A] 32.2
L:113 [GLY] 1:754 [G] 3.65 1:768 [C] 95.6
L:114 [HIS] 1:754 [G] 3.69 1:768 [C] base/AA stacks 26.8
L:114 [HIS] 1:768 [C] 3.06 1:754 [G] base/AA stacks 26.8
L:114 [HIS] 1:769 [U] 4.18 26.8
L:116 [GLN] 1:769 [U] 4.78 45.0
L:126 [VAL] 1:752 [G] 4.32 53.4
L:127 [SER] 1:752 [G] 3.38 94.6
L:127 [SER] 1:753 [A] 3.59 94.6
L:128 [LYS] 1:751 [G] 3.7 1:744 [C] 54.9
L:128 [LYS] 1:752 [G] 3.03 54.9
L:128 [LYS] 1:763 [U] 3.77 54.9
L:129 [LEU] 1:753 [A] 3.31 41.1
L:129 [LEU] 1:754 [G] 3.44 1:768 [C] 41.1
L:130 [ALA] 1:753 [A] 4.78 99.0
L:132 [LYS] 1:763 [U] 2.52 sugar:SC 63.0
L:132 [LYS] 1:764 [G] 3.77 1:758 [C] 63.0
L:132 [LYS] 1:765 [C] 2.93 1:757 [G] 63.0
L:133 [LYS] 1:754 [G] 3.01 1:768 [C] 97.3
L:136 [LYS] 1:765 [C] 4.18 1:757 [G] 31.9
L:136 [LYS] 1:766 [A] 3.52 1:756 [U] 31.9
L:145 [ALA] 1:71 [C] 3.66 62.6

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group127 6AZ3_L_1 L: 60s ribosomal protein l27a/l29, putative, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) A0A3Q8IGI9 Ribosomal proteins L15p and L18e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_L_1 7O7Y_Ba_B5 0.86 0.92 0.75 0.6 Ribosomal proteins L15p and L18e Eukaryotic large subunit ribosomal RNA compare
6AZ3_L_1 6S0Z_J_A 0.36 0.72 4.24 0.11 Ribosomal proteins L15p and L18e compare
1YHQ_L_0 6AZ3_L_1 0.63 0.77 2.67 0.34 Ribosomal proteins L15p and L18e compare
1VQ8_L_0 6AZ3_L_1 0.63 0.77 2.74 0.34 Ribosomal proteins L15p and L18e compare
4Y4O_1P_1A 6AZ3_L_1 0.43 0.71 3.9 0.19 Ribosomal proteins L15p and L18e compare