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All interfaces > All interologs > Interface groups > group127 > 6AZ3_L_2

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_L
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
L:38 [MET] 2:1190 [A] 3.66 2:1234 [U] 46.33
L:38 [MET] 2:1191 [U] 4.36 2:1233 [G] 46.33
L:38 [MET] 2:1238 [A] 4.27 2:1158 [U] 46.33
L:39 [HIS] 2:1240 [A] 3.4 78.82
L:42 [ARG] 2:1190 [A] 4.38 2:1234 [U] 39.67
L:42 [ARG] 2:1238 [A] 2.71 2:1158 [U] 39.67
L:42 [ARG] 2:1239 [G] 2.81 2:1189 [G] base:SC, base:SC 39.67
L:43 [ILE] 2:1156 [A] 3.5 63.0
L:53 [PHE] 2:1191 [U] 2.83 2:1233 [G] 63.79
L:54 [GLY] 2:1191 [U] 3.36 2:1233 [G] 89.54
L:54 [GLY] 2:1192 [C] 3.96 89.54
L:55 [LYS] 2:1191 [U] 4.41 2:1233 [G] 73.72
L:55 [LYS] 2:1192 [C] 3.14 73.72
L:55 [LYS] 2:1193 [C] 2.65 2:1232 [OMG] 73.72
L:55 [LYS] 2:1227 [C] 4.3 2:1199 [G] 73.72
L:56 [LEU] 2:1226 [A] 4.66 2:1212 [U] 50.41
L:56 [LEU] 2:1227 [C] 3.76 2:1199 [G] 50.41
L:57 [GLY] 2:1226 [A] 3.43 2:1212 [U] 91.93
L:57 [GLY] 2:1227 [C] 3.42 2:1199 [G] 91.93
L:58 [MET] 2:1213 [A] 3.36 2:1225 [U] 86.53
L:58 [MET] 2:1214 [U] 3.72 2:1224 [A] 86.53
L:58 [MET] 2:1216 [A] 4.96 86.53
L:58 [MET] 2:1225 [U] 4.58 2:1213 [A] 86.53
L:58 [MET] 2:1226 [A] 3.72 2:1212 [U] 86.53
L:59 [ASP] 2:1216 [A] 3.6 59.15
L:60 [HIS] 2:1216 [A] 3.24 base/AA stacks 57.51
L:61 [TYR] 2:1216 [A] 4.14 57.16
L:62 [HIS] 2:1216 [A] 4.55 55.59
L:64 [LYS] 2:1217 [A] 2.81 1:349 [U] 7.85

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group127 6AZ3_L_2 L: 60s ribosomal protein l27a/l29, putative, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A3Q8IGI9 Ribosomal proteins L15p and L18e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_L_0 6AZ3_L_2 0.48 0.82 2.32 0.27 Ribosomal proteins L15p and L18e compare
1VQ8_L_0 6AZ3_L_2 0.48 0.82 2.4 0.27 Ribosomal proteins L15p and L18e compare
4Y4O_1P_1A 6AZ3_L_2 0.29 0.83 5.19 0.0 Ribosomal proteins L15p and L18e compare
6AZ3_L_2 7O7Y_Ba_B5 0.97 0.91 0.6 0.67 Ribosomal proteins L15p and L18e Eukaryotic large subunit ribosomal RNA compare
6AZ3_L_2 6S0Z_J_A 0.29 0.81 5.35 0.13 Ribosomal proteins L15p and L18e compare