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All interfaces > All interologs > Interface groups > group128 > 1VQ8_S_0 vs 1YHQ_S_0

Interface analysis


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Common contacts -

1VQ8_S
1VQ8_0
1YHQ_S
1YHQ_0
Conserved?
S:65 [VAL] 0:1447 [U] S:65 [VAL] 0:1447 [U] ✔
S:55 [GLN] 0:1446 [U] S:55 [GLN] 0:1446 [U] ✔
S:55 [GLN] 0:1447 [U] S:55 [GLN] 0:1447 [U] ✔
S:23 [LYS] 0:1507 [C] S:23 [LYS] 0:1507 [C] ✔
S:23 [LYS] 0:1508 [C] S:23 [LYS] 0:1508 [C] ✔
S:58 [MET] 0:1417 [G] S:58 [MET] 0:1417 [G] ✔
S:58 [MET] 0:1418 [U] S:58 [MET] 0:1418 [U] ✔
S:58 [MET] 0:1445 [G] S:58 [MET] 0:1445 [G] ✔
S:58 [MET] 0:1446 [U] S:58 [MET] 0:1446 [U] ✔
S:52 [VAL] 0:1448 [A] S:52 [VAL] 0:1448 [A] ✔
S:56 [ASN] 0:1675 [C] S:56 [ASN] 0:1675 [C] ✔
S:56 [ASN] 0:1676 [G] S:56 [ASN] 0:1676 [G] ✔
S:56 [ASN] 0:1677 [U] S:56 [ASN] 0:1677 [U] ✔
S:67 [ARG] 0:1508 [C] S:67 [ARG] 0:1508 [C] ✔
S:51 [GLN] 0:1507 [C] S:51 [GLN] 0:1507 [C] ✔
S:51 [GLN] 0:1508 [C] S:51 [GLN] 0:1508 [C] ✔
S:2 [TRP] 0:67 [A] S:2 [TRP] 0:67 [A] ✔
S:11 [THR] 0:1444 [G] S:11 [THR] 0:1444 [G] ✔
S:11 [THR] 0:1445 [G] S:11 [THR] 0:1445 [G] ✔
S:9 [HIS] 0:1444 [G] S:9 [HIS] 0:1444 [G] ✔
S:9 [HIS] 0:1445 [G] S:9 [HIS] 0:1445 [G] ✔
S:35 [GLY] 0:1673 [U] S:35 [GLY] 0:1673 [U] ✔
S:53 [ASN] 0:1447 [U] S:53 [ASN] 0:1447 [U] ✔
S:53 [ASN] 0:1448 [A] S:53 [ASN] 0:1448 [A] ✔
S:53 [ASN] 0:1506 [U] S:53 [ASN] 0:1506 [U] ✔
S:53 [ASN] 0:1507 [C] S:53 [ASN] 0:1507 [C] ✔
S:63 [LYS] 0:1445 [G] S:63 [LYS] 0:1445 [G] ✔
S:63 [LYS] 0:1446 [U] S:63 [LYS] 0:1446 [U] ✔
S:12 [GLU] 0:1444 [G] S:12 [GLU] 0:1444 [G] ✔
S:12 [GLU] 0:1501 [A] S:12 [GLU] 0:1501 [A] ✔
S:14 [ALA] 0:1445 [G] S:14 [ALA] 0:1445 [G] ✔
S:30 [ASP] 0:1675 [C] S:30 [ASP] 0:1675 [C] ✔
S:32 [ALA] 0:1674 [C] S:32 [ALA] 0:1674 [C] ✔
S:29 [ASP] 0:67 [A] S:29 [ASP] 0:67 [A] ✔
S:21 [GLN] 0:1507 [C] S:21 [GLN] 0:1507 [C] ✔
S:21 [GLN] 0:1508 [C] S:21 [GLN] 0:1508 [C] ✔
S:62 [LYS] 0:1674 [C] S:62 [LYS] 0:1674 [C] ✔
S:62 [LYS] 0:1675 [C] S:62 [LYS] 0:1675 [C] ✔
S:25 [GLN] 0:1445 [G] S:25 [GLN] 0:1445 [G] ✔
S:17 [ASP] 0:1447 [U] S:17 [ASP] 0:1447 [U] ✔
S:33 [SER] 0:1673 [U] S:33 [SER] 0:1673 [U] ✔
S:33 [SER] 0:1674 [C] S:33 [SER] 0:1674 [C] ✔
S:13 [LYS] 0:1445 [G] S:13 [LYS] 0:1445 [G] ✔
S:13 [LYS] 0:1446 [U] S:13 [LYS] 0:1446 [U] ✔
S:13 [LYS] 0:1447 [U] S:13 [LYS] 0:1447 [U] ✔
S:13 [LYS] 0:1502 [A] S:13 [LYS] 0:1502 [A] ✔
S:13 [LYS] 0:1503 [U] S:13 [LYS] 0:1503 [U] ✔
S:54 [THR] 0:1447 [U] S:54 [THR] 0:1447 [U] ✔
S:54 [THR] 0:1448 [A] S:54 [THR] 0:1448 [A] ✔
S:54 [THR] 0:1674 [C] S:54 [THR] 0:1674 [C] ✔
S:54 [THR] 0:1675 [C] S:54 [THR] 0:1675 [C] ✔
S:34 [LYS] 0:1448 [A] S:34 [LYS] 0:1448 [A] ✔
S:34 [LYS] 0:1449 [G] S:34 [LYS] 0:1449 [G] ✔
S:34 [LYS] 0:1673 [U] S:34 [LYS] 0:1673 [U] ✔
S:34 [LYS] 0:1674 [C] S:34 [LYS] 0:1674 [C] ✔
S:31 [ARG] 0:67 [A] S:31 [ARG] 0:67 [A] ✔
S:31 [ARG] 0:109 [U] S:31 [ARG] 0:109 [U] ✔
S:1 [SER] 0:67 [A] S:1 [SER] 0:67 [A] ✔
S:1 [SER] 0:68 [U] S:1 [SER] 0:68 [U] ✔
S:12 [GLU] 0:1502 [A] S:12 [GLU] 0:1502 [A] ❌ 1VQ8_S_0

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA 1.0 0.15 1.00 1.0 1.0 1.0 1.0 1.00 0.96 0.92 0.00


Other pairs involving 1VQ8_S_0 or 1YHQ_S_0

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_S_0 6S0Z_R_A 0.72 0.93 1.29 0.34 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7RYG_S_A 0.49 0.91 2.81 0.24 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7O7Y_BX_B5,B8 0.81 0.94 1.11 0.41 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 1YHQ_S_0 1.00 1.0 0.15 1.0 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare
1VQ8_S_0 7OF0_U_A 0.64 0.91 3.54 0.14 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 4Y4O_1X_1A 0.81 0.93 1.76 0.38 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7K00_s_a 0.69 0.9 2.2 0.31 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 6AZ3_V_1,7 0.70 0.7 0.63 0.36 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 6AZ3_V_2 0.89 0.8 0.88 0.27 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7O7Y_BX_B5,B8 0.81 0.94 1.03 0.41 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7RYG_S_A 0.49 0.91 2.85 0.24 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7OF0_U_A 0.64 0.91 3.52 0.14 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 4Y4O_1X_1A 0.80 0.93 1.75 0.38 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6AZ3_V_1,7 0.70 0.7 0.6 0.36 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6AZ3_V_2 0.89 0.8 0.81 0.27 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7K00_s_a 0.68 0.9 2.28 0.31 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6S0Z_R_A 0.72 0.93 1.34 0.34 Ribosomal proteins S24e, L23 and L15e compare