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All interfaces > All interologs > Interface groups > group128 > 1VQ8_S_0 vs 4Y4O_1X_1A

Interface analysis


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Common contacts -

1VQ8_S
1VQ8_0
4Y4O_1X
4Y4O_1A
Conserved?
S:65 [VAL] 0:1447 [U] 1X:80 [ILE] 1A:1387 [U] ✔
S:55 [GLN] 0:1446 [U] 1X:57 [LEU] 1A:1386 [U] ✔
S:55 [GLN] 0:1447 [U] 1X:57 [LEU] 1A:1387 [U] ✔
S:23 [LYS] 0:1507 [C] 1X:25 [LYS] 1A:1444 [C] ✔
S:23 [LYS] 0:1508 [C] 1X:25 [LYS] 1A:1445 [C] ✔
S:58 [MET] 0:1417 [G] 1X:60 [ARG] 1A:1357 [G] ✔
S:58 [MET] 0:1418 [U] 1X:60 [ARG] 1A:1358 [U] ✔
S:52 [VAL] 0:1448 [A] 1X:54 [VAL] 1A:1388 [A] ✔
S:56 [ASN] 0:1675 [C] 1X:58 [HIS] 1A:1646 [C] ✔
S:56 [ASN] 0:1676 [G] 1X:58 [HIS] 1A:1647 [G] ✔
S:67 [ARG] 0:1508 [C] 1X:82 [GLN] 1A:1445 [C] ✔
S:51 [GLN] 0:1507 [C] 1X:53 [LYS] 1A:1444 [C] ✔
S:51 [GLN] 0:1508 [C] 1X:53 [LYS] 1A:1445 [C] ✔
S:11 [THR] 0:1444 [G] 1X:14 [SER] 1A:1384 [G] ✔
S:11 [THR] 0:1445 [G] 1X:14 [SER] 1A:1385 [G] ✔
S:9 [HIS] 0:1445 [G] 1X:12 [VAL] 1A:1385 [G] ✔
S:35 [GLY] 0:1673 [U] 1X:37 [THR] 1A:1644 [C] ✔
S:53 [ASN] 0:1447 [U] 1X:55 [ASN] 1A:1387 [U] ✔
S:53 [ASN] 0:1448 [A] 1X:55 [ASN] 1A:1388 [A] ✔
S:53 [ASN] 0:1506 [U] 1X:55 [ASN] 1A:1443 [U] ✔
S:53 [ASN] 0:1507 [C] 1X:55 [ASN] 1A:1444 [C] ✔
S:63 [LYS] 0:1445 [G] 1X:78 [LYS] 1A:1385 [G] ✔
S:63 [LYS] 0:1446 [U] 1X:78 [LYS] 1A:1386 [U] ✔
S:12 [GLU] 0:1501 [A] 1X:15 [GLU] 1A:1438 [A] ✔
S:14 [ALA] 0:1445 [G] 1X:17 [ALA] 1A:1385 [G] ✔
S:30 [ASP] 0:1675 [C] 1X:32 [PRO] 1A:1646 [C] ✔
S:32 [ALA] 0:1674 [C] 1X:34 [ALA] 1A:1645 [C] ✔
S:29 [ASP] 0:67 [A] 1X:31 [HIS] 1A:70 [A] ✔
S:21 [GLN] 0:1507 [C] 1X:23 [GLU] 1A:1444 [C] ✔
S:21 [GLN] 0:1508 [C] 1X:23 [GLU] 1A:1445 [C] ✔
S:62 [LYS] 0:1674 [C] 1X:77 [LYS] 1A:1645 [C] ✔
S:62 [LYS] 0:1675 [C] 1X:77 [LYS] 1A:1646 [C] ✔
S:33 [SER] 0:1673 [U] 1X:35 [THR] 1A:1644 [C] ✔
S:33 [SER] 0:1674 [C] 1X:35 [THR] 1A:1645 [C] ✔
S:13 [LYS] 0:1445 [G] 1X:16 [LYS] 1A:1385 [G] ✔
S:13 [LYS] 0:1446 [U] 1X:16 [LYS] 1A:1386 [U] ✔
S:13 [LYS] 0:1447 [U] 1X:16 [LYS] 1A:1387 [U] ✔
S:13 [LYS] 0:1502 [A] 1X:16 [LYS] 1A:1439 [A] ✔
S:13 [LYS] 0:1503 [U] 1X:16 [LYS] 1A:1440 [U] ✔
S:54 [THR] 0:1447 [U] 1X:56 [THR] 1A:1387 [U] ✔
S:54 [THR] 0:1448 [A] 1X:56 [THR] 1A:1388 [A] ✔
S:54 [THR] 0:1674 [C] 1X:56 [THR] 1A:1645 [C] ✔
S:54 [THR] 0:1675 [C] 1X:56 [THR] 1A:1646 [C] ✔
S:34 [LYS] 0:1448 [A] 1X:36 [LYS] 1A:1388 [A] ✔
S:34 [LYS] 0:1449 [G] 1X:36 [LYS] 1A:1389 [G] ✔
S:34 [LYS] 0:1673 [U] 1X:36 [LYS] 1A:1644 [C] ✔
S:34 [LYS] 0:1674 [C] 1X:36 [LYS] 1A:1645 [C] ✔
S:31 [ARG] 0:109 [U] 1X:33 [LYS] 1A:112 [U] ✔
S:1 [SER] 0:68 [U] 1X:1 [MET] 1A:71 [U] ✔
S:58 [MET] 0:1445 [G] 1X:60 [ARG] 1A:1385 [G] ❌ 4Y4O_1X_1A
S:58 [MET] 0:1446 [U] 1X:60 [ARG] 1A:1386 [U] ❌ 4Y4O_1X_1A
S:2 [TRP] 0:67 [A] 1X:2 [LYS] 1A:70 [A] ❌ 4Y4O_1X_1A
S:9 [HIS] 0:1444 [G] 1X:12 [VAL] 1A:1384 [G] ❌ 4Y4O_1X_1A
S:12 [GLU] 0:1444 [G] 1X:15 [GLU] 1A:1384 [G] ❌ 4Y4O_1X_1A
S:31 [ARG] 0:67 [A] 1X:33 [LYS] 1A:70 [A] ❌ 4Y4O_1X_1A
S:1 [SER] 0:67 [A] 1X:1 [MET] 1A:70 [A] ❌ 4Y4O_1X_1A
S:51 [GLN] 0:1448 [A] 1X:53 [LYS] 1A:1388 [A] ❌ 1VQ8_S_0
S:51 [GLN] 0:1449 [G] 1X:53 [LYS] 1A:1389 [G] ❌ 1VQ8_S_0
S:56 [ASN] 0:1446 [U] 1X:58 [HIS] 1A:1386 [U] ❌ 1VQ8_S_0
S:56 [ASN] 0:1674 [C] 1X:58 [HIS] 1A:1645 [C] ❌ 1VQ8_S_0
S:56 [ASN] 0:1677 [U] 1X:58 [HIS] 1A:1648 [U] ❌ 4Y4O_1A:1648 no longer at interface
S:31 [ARG] 0:122 [C] 1X:33 [LYS] 1A:126 [C] ❌ 1VQ8_0:122 no longer at interface
S:31 [ARG] 0:110 [C] 1X:33 [LYS] 1A:113 [C] ❌ 1VQ8_0:110 no longer at interface
S:35 [GLY] 0:1672 [G] 1X:37 [THR] 1A:1643 [A] ❌ 1VQ8_0:1672 no longer at interface
S:38 [ALA] 0:1672 [G] 1X:40 [LYS] 1A:1643 [A] ❌ 1VQ8_S:38, 1VQ8_0:1672 no longer at interface
S:38 [ALA] 0:1671 [U] 1X:40 [LYS] 1A:1642 [A] ❌ 1VQ8_S:38, 1VQ8_0:1671 no longer at interface
S:48 [THR] 0:1671 [U] 1X:50 [LYS] 1A:1642 [A] ❌ 1VQ8_S:48, 1VQ8_0:1671 no longer at interface
S:60 [GLY] 0:54 [G] 1X:75 [ASP] 1A:57 [G] ❌ 1VQ8_S:60, 1VQ8_0:54 no longer at interface
S:60 [GLY] 0:53 [C] 1X:75 [ASP] 1A:56 [C] ❌ 1VQ8_S:60, 1VQ8_0:53 no longer at interface
S:25 [GLN] 0:1445 [G] 1X:27 [THR] 1A:1385 [G] ❌ 4Y4O_1X:27 no longer at interface
S:17 [ASP] 0:1447 [U] 1X:20 [GLY] 1A:1387 [U] ❌ 4Y4O_1X:20 no longer at interface
S:10 [VAL] 0:1444 [G] 1X:13 [LEU] 1A:1384 [G] ❌ 1VQ8_S:10 no longer at interface
S:27 [ALA] 0:1445 [G] 1X:29 [TRP] 1A:1385 [G] ❌ 1VQ8_S:27 no longer at interface
S:3 [ASP] 0:68 [U] 1X:6 [ASP] 1A:71 [U] ❌ 1VQ8_S:3 no longer at interface
S:61 [GLU] 0:1444 [G] 1X:76 [ARG] 1A:1384 [G] ❌ 1VQ8_S:61 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal proteins S24e, L23 and L15e 0.93 1.76 0.38 0.86 0.93 0.93 0.95 0.81 0.74 0.54 0.58


Other pairs involving 1VQ8_S_0 or 4Y4O_1X_1A

Total number of entries: 16

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1X_1A 7RYG_S_A 0.60 0.96 3.01 0.51 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
4Y4O_1X_1A 7O7Y_BX_B5,B8 0.73 0.89 1.46 0.24 Ribosomal proteins S24e, L23 and L15e compare
4Y4O_1X_1A 7OF0_U_A 0.49 0.94 3.88 0.15 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
4Y4O_1X_1A 6S0Z_R_A 0.73 0.97 1.59 0.43 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
4Y4O_1X_1A 6AZ3_V_2 0.97 0.82 1.6 0.4 Ribosomal proteins S24e, L23 and L15e compare
4Y4O_1X_1A 7K00_s_a 0.61 0.96 1.72 0.49 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
1VQ8_S_0 6S0Z_R_A 0.72 0.93 1.29 0.34 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7RYG_S_A 0.49 0.91 2.81 0.24 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7O7Y_BX_B5,B8 0.81 0.94 1.11 0.41 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 1YHQ_S_0 1.00 1.0 0.15 1.0 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare
1VQ8_S_0 7OF0_U_A 0.64 0.91 3.54 0.14 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 4Y4O_1X_1A 0.81 0.93 1.76 0.38 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7K00_s_a 0.69 0.9 2.2 0.31 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 6AZ3_V_1,7 0.70 0.7 0.63 0.36 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 6AZ3_V_2 0.89 0.8 0.88 0.27 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 4Y4O_1X_1A 0.80 0.93 1.75 0.38 Ribosomal proteins S24e, L23 and L15e compare