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All interfaces > All interologs > Interface groups > group128 > 1VQ8_S_0 vs 7K00_s_a

Interface analysis


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Common contacts -

1VQ8_S
1VQ8_0
7K00_s
7K00_a
Conserved?
S:65 [VAL] 0:1447 [U] s:84 [TYR] a:1341 [G] ✔
S:55 [GLN] 0:1446 [U] s:61 [LEU] a:1340 [U] ✔
S:55 [GLN] 0:1447 [U] s:61 [LEU] a:1341 [G] ✔
S:58 [MET] 0:1418 [U] s:64 [LYS] a:1312 [U] ✔
S:52 [VAL] 0:1448 [A] s:58 [VAL] a:1342 [A] ✔
S:56 [ASN] 0:1675 [C] s:62 [VAL] a:1600 [C] ✔
S:56 [ASN] 0:1676 [G] s:62 [VAL] a:1601 [G] ✔
S:56 [ASN] 0:1677 [U] s:62 [VAL] a:1602 [U] ✔
S:67 [ARG] 0:1508 [C] s:86 [THR] a:1399 [C] ✔
S:11 [THR] 0:1444 [G] s:16 [VAL] a:1338 [G] ✔
S:53 [ASN] 0:1447 [U] s:59 [ASN] a:1341 [G] ✔
S:53 [ASN] 0:1448 [A] s:59 [ASN] a:1342 [A] ✔
S:53 [ASN] 0:1506 [U] s:59 [ASN] a:1397 [U] ✔
S:53 [ASN] 0:1507 [C] s:59 [ASN] a:1398 [C] ✔
S:63 [LYS] 0:1445 [G] s:82 [LYS] a:1339 [G] ✔
S:63 [LYS] 0:1446 [U] s:82 [LYS] a:1340 [U] ✔
S:12 [GLU] 0:1444 [G] s:17 [SER] a:1338 [G] ✔
S:14 [ALA] 0:1445 [G] s:20 [ALA] a:1339 [G] ✔
S:30 [ASP] 0:1675 [C] s:36 [LYS] a:1600 [C] ✔
S:32 [ALA] 0:1674 [C] s:38 [ALA] a:1599 [U] ✔
S:21 [GLN] 0:1507 [C] s:27 [SER] a:1398 [C] ✔
S:21 [GLN] 0:1508 [C] s:27 [SER] a:1399 [C] ✔
S:62 [LYS] 0:1674 [C] s:81 [LYS] a:1599 [U] ✔
S:62 [LYS] 0:1675 [C] s:81 [LYS] a:1600 [C] ✔
S:33 [SER] 0:1673 [U] s:39 [THR] a:1598 [A] ✔
S:33 [SER] 0:1674 [C] s:39 [THR] a:1599 [U] ✔
S:13 [LYS] 0:1445 [G] s:19 [LYS] a:1339 [G] ✔
S:13 [LYS] 0:1446 [U] s:19 [LYS] a:1340 [U] ✔
S:13 [LYS] 0:1447 [U] s:19 [LYS] a:1341 [G] ✔
S:13 [LYS] 0:1502 [A] s:19 [LYS] a:1393 [A] ✔
S:13 [LYS] 0:1503 [U] s:19 [LYS] a:1394 [U] ✔
S:54 [THR] 0:1447 [U] s:60 [THR] a:1341 [G] ✔
S:54 [THR] 0:1448 [A] s:60 [THR] a:1342 [A] ✔
S:54 [THR] 0:1674 [C] s:60 [THR] a:1599 [U] ✔
S:54 [THR] 0:1675 [C] s:60 [THR] a:1600 [C] ✔
S:34 [LYS] 0:1448 [A] s:40 [LYS] a:1342 [A] ✔
S:34 [LYS] 0:1449 [G] s:40 [LYS] a:1343 [G] ✔
S:34 [LYS] 0:1673 [U] s:40 [LYS] a:1598 [A] ✔
S:34 [LYS] 0:1674 [C] s:40 [LYS] a:1599 [U] ✔
S:23 [LYS] 0:1507 [C] s:29 [THR] a:1398 [C] ❌ 7K00_s_a
S:23 [LYS] 0:1508 [C] s:29 [THR] a:1399 [C] ❌ 7K00_s_a
S:58 [MET] 0:1445 [G] s:64 [LYS] a:1339 [G] ❌ 7K00_s_a
S:58 [MET] 0:1446 [U] s:64 [LYS] a:1340 [U] ❌ 7K00_s_a
S:11 [THR] 0:1445 [G] s:16 [VAL] a:1339 [G] ❌ 7K00_s_a
S:35 [GLY] 0:1673 [U] s:41 [ALA] a:1598 [A] ❌ 7K00_s_a
S:12 [GLU] 0:1501 [A] s:17 [SER] a:1392 [A] ❌ 7K00_s_a
S:12 [GLU] 0:1445 [G] s:17 [SER] a:1339 [G] ❌ 1VQ8_S_0
S:23 [LYS] 0:1447 [U] s:29 [THR] a:1341 [G] ❌ 1VQ8_S_0
S:56 [ASN] 0:1446 [U] s:62 [VAL] a:1340 [U] ❌ 1VQ8_S_0
S:58 [MET] 0:1677 [U] s:64 [LYS] a:1602 [U] ❌ 1VQ8_S_0
S:58 [MET] 0:1676 [G] s:64 [LYS] a:1601 [G] ❌ 1VQ8_S_0
S:65 [VAL] 0:1445 [G] s:84 [TYR] a:1339 [G] ❌ 1VQ8_S_0
S:65 [VAL] 0:1446 [U] s:84 [TYR] a:1340 [U] ❌ 1VQ8_S_0
S:67 [ARG] 0:1447 [U] s:86 [THR] a:1341 [G] ❌ 1VQ8_S_0
S:58 [MET] 0:1417 [G] s:64 [LYS] a:1311 [G] ❌ 7K00_a:1311 no longer at interface
S:2 [TRP] 0:67 [A] s:5 [GLU] a:71 [A] ❌ 7K00_s:5, 7K00_a:71 no longer at interface
S:29 [ASP] 0:67 [A] s:35 [ALA] a:71 [A] ❌ 7K00_s:35, 7K00_a:71 no longer at interface
S:31 [ARG] 0:67 [A] s:37 [ASP] a:71 [A] ❌ 7K00_s:37, 7K00_a:71 no longer at interface
S:31 [ARG] 0:109 [U] s:37 [ASP] a:114 [U] ❌ 7K00_s:37, 7K00_a:114 no longer at interface
S:13 [LYS] 0:1504 [A] s:19 [LYS] a:1395 [A] ❌ 1VQ8_0:1504 no longer at interface
S:20 [PHE] 0:1499 [U] s:26 [LYS] a:1390 [U] ❌ 1VQ8_S:20, 1VQ8_0:1499 no longer at interface
S:20 [PHE] 0:1500 [U] s:26 [LYS] a:1391 [U] ❌ 1VQ8_S:20, 1VQ8_0:1500 no longer at interface
S:35 [GLY] 0:1672 [G] s:41 [ALA] a:1597 [A] ❌ 1VQ8_0:1672 no longer at interface
S:38 [ALA] 0:1671 [U] s:44 [LYS] a:1596 [A] ❌ 1VQ8_S:38, 1VQ8_0:1671 no longer at interface
S:60 [GLY] 0:54 [G] s:79 [ASP] a:58 [G] ❌ 1VQ8_S:60, 1VQ8_0:54 no longer at interface
S:51 [GLN] 0:1507 [C] s:57 [VAL] a:1398 [C] ❌ 7K00_s:57 no longer at interface
S:51 [GLN] 0:1508 [C] s:57 [VAL] a:1399 [C] ❌ 7K00_s:57 no longer at interface
S:9 [HIS] 0:1444 [G] s:14 [PRO] a:1338 [G] ❌ 7K00_s:14 no longer at interface
S:9 [HIS] 0:1445 [G] s:14 [PRO] a:1339 [G] ❌ 7K00_s:14 no longer at interface
S:25 [GLN] 0:1445 [G] s:31 [VAL] a:1339 [G] ❌ 7K00_s:31 no longer at interface
S:17 [ASP] 0:1447 [U] s:23 [ALA] a:1341 [G] ❌ 7K00_s:23 no longer at interface
S:10 [VAL] 0:1445 [G] s:15 [HIS] a:1339 [G] ❌ 1VQ8_S:10 no longer at interface
S:10 [VAL] 0:1444 [G] s:15 [HIS] a:1338 [G] ❌ 1VQ8_S:10 no longer at interface
S:61 [GLU] 0:1445 [G] s:80 [TRP] a:1339 [G] ❌ 1VQ8_S:61 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal proteins S24e, L23 and L15e 0.9 2.2 0.31 0.86 0.9 0.72 0.82 0.69 0.70 0.34 0.57


Other pairs involving 1VQ8_S_0 or 7K00_s_a

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1X_1A 7K00_s_a 0.61 0.96 1.72 0.49 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6AZ3_V_2 7K00_s_a 0.70 0.81 2.3 0.33 Ribosomal proteins S24e, L23 and L15e compare
6S0Z_R_A 7K00_s_a 0.65 0.97 1.61 0.29 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
1VQ8_S_0 6S0Z_R_A 0.72 0.93 1.29 0.34 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7RYG_S_A 0.49 0.91 2.81 0.24 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7O7Y_BX_B5,B8 0.81 0.94 1.11 0.41 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 1YHQ_S_0 1.00 1.0 0.15 1.0 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare
1VQ8_S_0 7OF0_U_A 0.64 0.91 3.54 0.14 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 4Y4O_1X_1A 0.81 0.93 1.76 0.38 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7K00_s_a 0.69 0.9 2.2 0.31 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 6AZ3_V_1,7 0.70 0.7 0.63 0.36 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 6AZ3_V_2 0.89 0.8 0.88 0.27 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7K00_s_a 0.68 0.9 2.28 0.31 Ribosomal proteins S24e, L23 and L15e compare