RNAprotDB

All interfaces > All interologs > Interface groups > group128 > 1YHQ_S_0

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1YHQ_S
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
S:1 [SER] 0:67 [A] 3.08 32.72
S:1 [SER] 0:68 [U] 3.12 32.72
S:2 [TRP] 0:67 [A] 3.46 0.03
S:9 [HIS] 0:1444 [G] 4.55 0:1420 [C] 49.85
S:9 [HIS] 0:1445 [G] 3.13 49.85
S:11 [THR] 0:1444 [G] 3.42 0:1420 [C] 91.32
S:11 [THR] 0:1445 [G] 2.73 91.32
S:12 [GLU] 0:1444 [G] 3.57 0:1420 [C] sugar:SC 99.0
S:12 [GLU] 0:1501 [A] 2.81 base:SC 99.0
S:12 [GLU] 0:1502 [A] 4.99 99.0
S:13 [LYS] 0:1445 [G] 3.13 94.07
S:13 [LYS] 0:1446 [U] 2.83 0:1418 [U] 94.07
S:13 [LYS] 0:1447 [U] 3.09 base:SC 94.07
S:13 [LYS] 0:1502 [A] 4.01 94.07
S:13 [LYS] 0:1503 [U] 2.97 base:SC 94.07
S:14 [ALA] 0:1445 [G] 4.86 73.42
S:17 [ASP] 0:1447 [U] 4.7 22.21
S:21 [GLN] 0:1507 [C] 3.05 0:1498 [G] sugar:SC 25.46
S:21 [GLN] 0:1508 [C] 3.31 0:1497 [G] sugar:SC 25.46
S:23 [LYS] 0:1507 [C] 2.97 0:1498 [G] sugar:SC 38.78
S:23 [LYS] 0:1508 [C] 3.87 0:1497 [G] 38.78
S:25 [GLN] 0:1445 [G] 4.61 72.51
S:29 [ASP] 0:67 [A] 4.64 28.12
S:30 [ASP] 0:1675 [C] 4.1 0:1452 [G] 32.55
S:31 [ARG] 0:67 [A] 3.7 base:SC 33.98
S:31 [ARG] 0:109 [U] 3.51 0:52 [A] sugar:SC 33.98
S:32 [ALA] 0:1674 [C] 4.36 0:1453 [G] 92.38
S:33 [SER] 0:1673 [U] 3.57 81.99
S:33 [SER] 0:1674 [C] 3.34 0:1453 [G] 81.99
S:34 [LYS] 0:1448 [A] 2.65 0:1677 [U] 97.91
S:34 [LYS] 0:1449 [G] 4.95 0:1513 [C] 97.91
S:34 [LYS] 0:1673 [U] 3.57 97.91
S:34 [LYS] 0:1674 [C] 2.92 0:1453 [G] 97.91
S:35 [GLY] 0:1673 [U] 4.95 5.41
S:51 [GLN] 0:1507 [C] 3.77 0:1498 [G] 50.36
S:51 [GLN] 0:1508 [C] 4.05 0:1497 [G] 50.36
S:52 [VAL] 0:1448 [A] 4.8 0:1677 [U] 94.46
S:53 [ASN] 0:1447 [U] 3.26 sugar:SC 85.63
S:53 [ASN] 0:1448 [A] 3.24 0:1677 [U] 85.63
S:53 [ASN] 0:1506 [U] 4.59 85.63
S:53 [ASN] 0:1507 [C] 3.17 0:1498 [G] 85.63
S:54 [THR] 0:1447 [U] 3.52 84.34
S:54 [THR] 0:1448 [A] 3.37 0:1677 [U] 84.34
S:54 [THR] 0:1674 [C] 4.22 0:1453 [G] 84.34
S:54 [THR] 0:1675 [C] 4.32 0:1452 [G] 84.34
S:55 [GLN] 0:1446 [U] 3.05 0:1418 [U] 42.79
S:55 [GLN] 0:1447 [U] 4.49 42.79
S:56 [ASN] 0:1675 [C] 2.97 0:1452 [G] 71.45
S:56 [ASN] 0:1676 [G] 2.71 0:1451 [C] 71.45
S:56 [ASN] 0:1677 [U] 4.5 0:1448 [A] 71.45
S:58 [MET] 0:1417 [G] 4.9 36.53
S:58 [MET] 0:1418 [U] 3.48 0:1446 [U] 36.53
S:58 [MET] 0:1445 [G] 4.2 36.53
S:58 [MET] 0:1446 [U] 3.52 0:1418 [U] 36.53
S:62 [LYS] 0:1674 [C] 4.17 0:1453 [G] 95.69
S:62 [LYS] 0:1675 [C] 2.88 0:1452 [G] 95.69
S:63 [LYS] 0:1445 [G] 4.05 92.66
S:63 [LYS] 0:1446 [U] 2.77 0:1418 [U] 92.66
S:65 [VAL] 0:1447 [U] 3.64 46.44
S:67 [ARG] 0:1508 [C] 3.16 0:1497 [G] 64.65

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group128 1YHQ_S_0 S: 50s ribosomal protein l23p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P12732 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_S_0 1YHQ_S_0 1.00 1.0 0.15 1.0 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare
1YHQ_S_0 7O7Y_BX_B5,B8 0.81 0.94 1.03 0.41 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7RYG_S_A 0.49 0.91 2.85 0.24 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7OF0_U_A 0.64 0.91 3.52 0.14 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 4Y4O_1X_1A 0.80 0.93 1.75 0.38 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6AZ3_V_1,7 0.70 0.7 0.6 0.36 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6AZ3_V_2 0.89 0.8 0.81 0.27 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7K00_s_a 0.68 0.9 2.28 0.31 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6S0Z_R_A 0.72 0.93 1.34 0.34 Ribosomal proteins S24e, L23 and L15e compare