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All interfaces > All interologs > Interface groups > group128 > 1YHQ_S_0 vs 6S0Z_R_A

Interface analysis


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Common contacts -

1YHQ_S
1YHQ_0
6S0Z_R
6S0Z_A
Conserved?
S:65 [VAL] 0:1447 [U] R:79 [ILE] A:1378 [U] ✔
S:55 [GLN] 0:1446 [U] R:56 [MET] A:1377 [U] ✔
S:55 [GLN] 0:1447 [U] R:56 [MET] A:1378 [U] ✔
S:23 [LYS] 0:1507 [C] R:24 [LYS] A:1435 [C] ✔
S:23 [LYS] 0:1508 [C] R:24 [LYS] A:1436 [C] ✔
S:58 [MET] 0:1417 [G] R:59 [LYS] A:1348 [U] ✔
S:58 [MET] 0:1418 [U] R:59 [LYS] A:1349 [U] ✔
S:56 [ASN] 0:1675 [C] R:57 [ASN] A:1644 [C] ✔
S:56 [ASN] 0:1676 [G] R:57 [ASN] A:1645 [G] ✔
S:56 [ASN] 0:1677 [U] R:57 [ASN] A:1646 [U] ✔
S:67 [ARG] 0:1508 [C] R:81 [THR] A:1436 [C] ✔
S:11 [THR] 0:1444 [G] R:13 [THR] A:1375 [G] ✔
S:11 [THR] 0:1445 [G] R:13 [THR] A:1376 [G] ✔
S:9 [HIS] 0:1445 [G] R:11 [VAL] A:1376 [G] ✔
S:35 [GLY] 0:1673 [U] R:36 [THR] A:1642 [C] ✔
S:53 [ASN] 0:1447 [U] R:54 [ASN] A:1378 [U] ✔
S:53 [ASN] 0:1448 [A] R:54 [ASN] A:1379 [A] ✔
S:53 [ASN] 0:1506 [U] R:54 [ASN] A:1434 [U] ✔
S:53 [ASN] 0:1507 [C] R:54 [ASN] A:1435 [C] ✔
S:63 [LYS] 0:1445 [G] R:77 [LYS] A:1376 [G] ✔
S:63 [LYS] 0:1446 [U] R:77 [LYS] A:1377 [U] ✔
S:12 [GLU] 0:1444 [G] R:14 [GLU] A:1375 [G] ✔
S:12 [GLU] 0:1501 [A] R:14 [GLU] A:1429 [G] ✔
S:12 [GLU] 0:1502 [A] R:14 [GLU] A:1430 [A] ✔
S:32 [ALA] 0:1674 [C] R:33 [VAL] A:1643 [C] ✔
S:29 [ASP] 0:67 [A] R:30 [ASP] A:71 [A] ✔
S:62 [LYS] 0:1674 [C] R:76 [ARG] A:1643 [C] ✔
S:62 [LYS] 0:1675 [C] R:76 [ARG] A:1644 [C] ✔
S:33 [SER] 0:1673 [U] R:34 [ASN] A:1642 [C] ✔
S:33 [SER] 0:1674 [C] R:34 [ASN] A:1643 [C] ✔
S:13 [LYS] 0:1445 [G] R:15 [LYS] A:1376 [G] ✔
S:13 [LYS] 0:1446 [U] R:15 [LYS] A:1377 [U] ✔
S:13 [LYS] 0:1447 [U] R:15 [LYS] A:1378 [U] ✔
S:13 [LYS] 0:1502 [A] R:15 [LYS] A:1430 [A] ✔
S:13 [LYS] 0:1503 [U] R:15 [LYS] A:1431 [U] ✔
S:54 [THR] 0:1447 [U] R:55 [ILE] A:1378 [U] ✔
S:54 [THR] 0:1448 [A] R:55 [ILE] A:1379 [A] ✔
S:54 [THR] 0:1674 [C] R:55 [ILE] A:1643 [C] ✔
S:54 [THR] 0:1675 [C] R:55 [ILE] A:1644 [C] ✔
S:34 [LYS] 0:1448 [A] R:35 [LYS] A:1379 [A] ✔
S:34 [LYS] 0:1449 [G] R:35 [LYS] A:1380 [G] ✔
S:34 [LYS] 0:1673 [U] R:35 [LYS] A:1642 [C] ✔
S:34 [LYS] 0:1674 [C] R:35 [LYS] A:1643 [C] ✔
S:31 [ARG] 0:67 [A] R:32 [ARG] A:71 [A] ✔
S:31 [ARG] 0:109 [U] R:32 [ARG] A:113 [U] ✔
S:58 [MET] 0:1445 [G] R:59 [LYS] A:1376 [G] ❌ 6S0Z_R_A
S:58 [MET] 0:1446 [U] R:59 [LYS] A:1377 [U] ❌ 6S0Z_R_A
S:9 [HIS] 0:1444 [G] R:11 [VAL] A:1375 [G] ❌ 6S0Z_R_A
S:56 [ASN] 0:1446 [U] R:57 [ASN] A:1377 [U] ❌ 1YHQ_S_0
S:58 [MET] 0:1677 [U] R:59 [LYS] A:1646 [U] ❌ 1YHQ_S_0
S:1 [SER] 0:68 [U] R:2 [GLU] A:72 [U] ❌ 6S0Z_R:2, 6S0Z_A:72 no longer at interface
S:35 [GLY] 0:1672 [G] R:36 [THR] A:1641 [G] ❌ 1YHQ_0:1672 no longer at interface
S:38 [ALA] 0:1671 [U] R:39 [LYS] A:1640 [U] ❌ 1YHQ_S:38, 1YHQ_0:1671 no longer at interface
S:38 [ALA] 0:1672 [G] R:39 [LYS] A:1641 [G] ❌ 1YHQ_S:38, 1YHQ_0:1672 no longer at interface
S:60 [GLY] 0:54 [G] R:74 [LYS] A:58 [G] ❌ 1YHQ_S:60, 1YHQ_0:54 no longer at interface
S:60 [GLY] 0:53 [C] R:74 [LYS] A:57 [C] ❌ 1YHQ_S:60, 1YHQ_0:53 no longer at interface
S:60 [GLY] 0:122 [C] R:74 [LYS] A:127 [C] ❌ 1YHQ_S:60, 1YHQ_0:122 no longer at interface
S:6 [LYS] 0:55 [U] R:8 [LYS] A:59 [U] ❌ 1YHQ_S:6, 1YHQ_0:55 no longer at interface
S:69 [SER] 0:1671 [U] R:83 [LYS] A:1640 [U] ❌ 1YHQ_S:69, 1YHQ_0:1671 no longer at interface
S:52 [VAL] 0:1448 [A] R:53 [VAL] A:1379 [A] ❌ 6S0Z_R:53 no longer at interface
S:51 [GLN] 0:1507 [C] R:52 [SER] A:1435 [C] ❌ 6S0Z_R:52 no longer at interface
S:51 [GLN] 0:1508 [C] R:52 [SER] A:1436 [C] ❌ 6S0Z_R:52 no longer at interface
S:14 [ALA] 0:1445 [G] R:16 [SER] A:1376 [G] ❌ 6S0Z_R:16 no longer at interface
S:30 [ASP] 0:1675 [C] R:31 [THR] A:1644 [C] ❌ 6S0Z_R:31 no longer at interface
S:25 [GLN] 0:1445 [G] R:26 [THR] A:1376 [G] ❌ 6S0Z_R:26 no longer at interface
S:17 [ASP] 0:1447 [U] R:19 [ALA] A:1378 [U] ❌ 6S0Z_R:19 no longer at interface
S:1 [SER] 0:67 [A] R:2 [GLU] A:71 [A] ❌ 6S0Z_R:2 no longer at interface
S:10 [VAL] 0:1444 [G] R:12 [ILE] A:1375 [G] ❌ 1YHQ_S:10 no longer at interface
S:16 [ASN] 0:1501 [A] R:18 [GLU] A:1429 [G] ❌ 1YHQ_S:16 no longer at interface
S:20 [PHE] 0:1507 [C] R:22 [GLU] A:1435 [C] ❌ 1YHQ_S:20 no longer at interface
S:20 [PHE] 0:1508 [C] R:22 [GLU] A:1436 [C] ❌ 1YHQ_S:20 no longer at interface
S:57 [THR] 0:1445 [G] R:58 [TYR] A:1376 [G] ❌ 1YHQ_S:57 no longer at interface
S:57 [THR] 0:1446 [U] R:58 [TYR] A:1377 [U] ❌ 1YHQ_S:57 no longer at interface
S:61 [GLU] 0:1445 [G] R:75 [ARG] A:1376 [G] ❌ 1YHQ_S:61 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal proteins S24e, L23 and L15e 0.93 1.34 0.34 0.82 0.93 0.69 0.95 0.72 0.61 0.52 0.83


Other pairs involving 1YHQ_S_0 or 6S0Z_R_A

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1X_1A 6S0Z_R_A 0.73 0.97 1.59 0.43 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6AZ3_V_2 6S0Z_R_A 0.94 0.8 1.4 0.27 Ribosomal proteins S24e, L23 and L15e compare
6S0Z_R_A 7RYG_S_A 0.74 0.98 1.83 0.31 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6S0Z_R_A 7OF0_U_A 0.58 0.93 4.12 0.05 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6S0Z_R_A 7K00_s_a 0.65 0.97 1.61 0.29 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6S0Z_R_A 7O7Y_BX_B5,B8 0.67 0.89 1.71 0.19 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 6S0Z_R_A 0.72 0.93 1.29 0.34 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 1YHQ_S_0 1.00 1.0 0.15 1.0 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare
6AZ3_V_1,7 6S0Z_R_A 0.56 0.65 1.63 0.24 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7O7Y_BX_B5,B8 0.81 0.94 1.03 0.41 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7RYG_S_A 0.49 0.91 2.85 0.24 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7OF0_U_A 0.64 0.91 3.52 0.14 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 4Y4O_1X_1A 0.80 0.93 1.75 0.38 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6AZ3_V_1,7 0.70 0.7 0.6 0.36 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6AZ3_V_2 0.89 0.8 0.81 0.27 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7K00_s_a 0.68 0.9 2.28 0.31 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6S0Z_R_A 0.72 0.93 1.34 0.34 Ribosomal proteins S24e, L23 and L15e compare