RNAprotDB

All interfaces > All interologs > Interface groups > group128 > 1YHQ_S_0 vs 7K00_s_a

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1YHQ_S
1YHQ_0
7K00_s
7K00_a
Conserved?
S:65 [VAL] 0:1447 [U] s:84 [TYR] a:1341 [G] ✔
S:55 [GLN] 0:1446 [U] s:61 [LEU] a:1340 [U] ✔
S:55 [GLN] 0:1447 [U] s:61 [LEU] a:1341 [G] ✔
S:58 [MET] 0:1418 [U] s:64 [LYS] a:1312 [U] ✔
S:52 [VAL] 0:1448 [A] s:58 [VAL] a:1342 [A] ✔
S:56 [ASN] 0:1675 [C] s:62 [VAL] a:1600 [C] ✔
S:56 [ASN] 0:1676 [G] s:62 [VAL] a:1601 [G] ✔
S:56 [ASN] 0:1677 [U] s:62 [VAL] a:1602 [U] ✔
S:67 [ARG] 0:1508 [C] s:86 [THR] a:1399 [C] ✔
S:11 [THR] 0:1444 [G] s:16 [VAL] a:1338 [G] ✔
S:53 [ASN] 0:1447 [U] s:59 [ASN] a:1341 [G] ✔
S:53 [ASN] 0:1448 [A] s:59 [ASN] a:1342 [A] ✔
S:53 [ASN] 0:1506 [U] s:59 [ASN] a:1397 [U] ✔
S:53 [ASN] 0:1507 [C] s:59 [ASN] a:1398 [C] ✔
S:63 [LYS] 0:1445 [G] s:82 [LYS] a:1339 [G] ✔
S:63 [LYS] 0:1446 [U] s:82 [LYS] a:1340 [U] ✔
S:12 [GLU] 0:1444 [G] s:17 [SER] a:1338 [G] ✔
S:14 [ALA] 0:1445 [G] s:20 [ALA] a:1339 [G] ✔
S:30 [ASP] 0:1675 [C] s:36 [LYS] a:1600 [C] ✔
S:32 [ALA] 0:1674 [C] s:38 [ALA] a:1599 [U] ✔
S:21 [GLN] 0:1507 [C] s:27 [SER] a:1398 [C] ✔
S:21 [GLN] 0:1508 [C] s:27 [SER] a:1399 [C] ✔
S:62 [LYS] 0:1674 [C] s:81 [LYS] a:1599 [U] ✔
S:62 [LYS] 0:1675 [C] s:81 [LYS] a:1600 [C] ✔
S:33 [SER] 0:1673 [U] s:39 [THR] a:1598 [A] ✔
S:33 [SER] 0:1674 [C] s:39 [THR] a:1599 [U] ✔
S:13 [LYS] 0:1445 [G] s:19 [LYS] a:1339 [G] ✔
S:13 [LYS] 0:1446 [U] s:19 [LYS] a:1340 [U] ✔
S:13 [LYS] 0:1447 [U] s:19 [LYS] a:1341 [G] ✔
S:13 [LYS] 0:1502 [A] s:19 [LYS] a:1393 [A] ✔
S:13 [LYS] 0:1503 [U] s:19 [LYS] a:1394 [U] ✔
S:54 [THR] 0:1447 [U] s:60 [THR] a:1341 [G] ✔
S:54 [THR] 0:1448 [A] s:60 [THR] a:1342 [A] ✔
S:54 [THR] 0:1674 [C] s:60 [THR] a:1599 [U] ✔
S:54 [THR] 0:1675 [C] s:60 [THR] a:1600 [C] ✔
S:34 [LYS] 0:1448 [A] s:40 [LYS] a:1342 [A] ✔
S:34 [LYS] 0:1449 [G] s:40 [LYS] a:1343 [G] ✔
S:34 [LYS] 0:1673 [U] s:40 [LYS] a:1598 [A] ✔
S:34 [LYS] 0:1674 [C] s:40 [LYS] a:1599 [U] ✔
S:23 [LYS] 0:1507 [C] s:29 [THR] a:1398 [C] ❌ 7K00_s_a
S:23 [LYS] 0:1508 [C] s:29 [THR] a:1399 [C] ❌ 7K00_s_a
S:58 [MET] 0:1445 [G] s:64 [LYS] a:1339 [G] ❌ 7K00_s_a
S:58 [MET] 0:1446 [U] s:64 [LYS] a:1340 [U] ❌ 7K00_s_a
S:11 [THR] 0:1445 [G] s:16 [VAL] a:1339 [G] ❌ 7K00_s_a
S:35 [GLY] 0:1673 [U] s:41 [ALA] a:1598 [A] ❌ 7K00_s_a
S:12 [GLU] 0:1501 [A] s:17 [SER] a:1392 [A] ❌ 7K00_s_a
S:12 [GLU] 0:1502 [A] s:17 [SER] a:1393 [A] ❌ 7K00_s_a
S:12 [GLU] 0:1445 [G] s:17 [SER] a:1339 [G] ❌ 1YHQ_S_0
S:23 [LYS] 0:1447 [U] s:29 [THR] a:1341 [G] ❌ 1YHQ_S_0
S:56 [ASN] 0:1446 [U] s:62 [VAL] a:1340 [U] ❌ 1YHQ_S_0
S:58 [MET] 0:1677 [U] s:64 [LYS] a:1602 [U] ❌ 1YHQ_S_0
S:58 [MET] 0:1676 [G] s:64 [LYS] a:1601 [G] ❌ 1YHQ_S_0
S:65 [VAL] 0:1445 [G] s:84 [TYR] a:1339 [G] ❌ 1YHQ_S_0
S:65 [VAL] 0:1446 [U] s:84 [TYR] a:1340 [U] ❌ 1YHQ_S_0
S:67 [ARG] 0:1447 [U] s:86 [THR] a:1341 [G] ❌ 1YHQ_S_0
S:58 [MET] 0:1417 [G] s:64 [LYS] a:1311 [G] ❌ 7K00_a:1311 no longer at interface
S:2 [TRP] 0:67 [A] s:5 [GLU] a:71 [A] ❌ 7K00_s:5, 7K00_a:71 no longer at interface
S:29 [ASP] 0:67 [A] s:35 [ALA] a:71 [A] ❌ 7K00_s:35, 7K00_a:71 no longer at interface
S:31 [ARG] 0:67 [A] s:37 [ASP] a:71 [A] ❌ 7K00_s:37, 7K00_a:71 no longer at interface
S:31 [ARG] 0:109 [U] s:37 [ASP] a:114 [U] ❌ 7K00_s:37, 7K00_a:114 no longer at interface
S:13 [LYS] 0:1504 [A] s:19 [LYS] a:1395 [A] ❌ 1YHQ_0:1504 no longer at interface
S:20 [PHE] 0:1499 [U] s:26 [LYS] a:1390 [U] ❌ 1YHQ_S:20, 1YHQ_0:1499 no longer at interface
S:20 [PHE] 0:1500 [U] s:26 [LYS] a:1391 [U] ❌ 1YHQ_S:20, 1YHQ_0:1500 no longer at interface
S:35 [GLY] 0:1672 [G] s:41 [ALA] a:1597 [A] ❌ 1YHQ_0:1672 no longer at interface
S:38 [ALA] 0:1671 [U] s:44 [LYS] a:1596 [A] ❌ 1YHQ_S:38, 1YHQ_0:1671 no longer at interface
S:60 [GLY] 0:54 [G] s:79 [ASP] a:58 [G] ❌ 1YHQ_S:60, 1YHQ_0:54 no longer at interface
S:51 [GLN] 0:1507 [C] s:57 [VAL] a:1398 [C] ❌ 7K00_s:57 no longer at interface
S:51 [GLN] 0:1508 [C] s:57 [VAL] a:1399 [C] ❌ 7K00_s:57 no longer at interface
S:9 [HIS] 0:1444 [G] s:14 [PRO] a:1338 [G] ❌ 7K00_s:14 no longer at interface
S:9 [HIS] 0:1445 [G] s:14 [PRO] a:1339 [G] ❌ 7K00_s:14 no longer at interface
S:25 [GLN] 0:1445 [G] s:31 [VAL] a:1339 [G] ❌ 7K00_s:31 no longer at interface
S:17 [ASP] 0:1447 [U] s:23 [ALA] a:1341 [G] ❌ 7K00_s:23 no longer at interface
S:10 [VAL] 0:1445 [G] s:15 [HIS] a:1339 [G] ❌ 1YHQ_S:10 no longer at interface
S:10 [VAL] 0:1444 [G] s:15 [HIS] a:1338 [G] ❌ 1YHQ_S:10 no longer at interface
S:61 [GLU] 0:1445 [G] s:80 [TRP] a:1339 [G] ❌ 1YHQ_S:61 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal proteins S24e, L23 and L15e 0.9 2.28 0.31 0.86 0.9 0.72 0.82 0.68 0.69 0.33 0.56


Other pairs involving 1YHQ_S_0 or 7K00_s_a

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_S_0 1YHQ_S_0 1.00 1.0 0.15 1.0 Ribosomal proteins S24e, L23 and L15e Archaeal large subunit ribosomal RNA compare
1VQ8_S_0 7K00_s_a 0.69 0.9 2.2 0.31 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7O7Y_BX_B5,B8 0.81 0.94 1.03 0.41 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7RYG_S_A 0.49 0.91 2.85 0.24 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7OF0_U_A 0.64 0.91 3.52 0.14 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 4Y4O_1X_1A 0.80 0.93 1.75 0.38 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6AZ3_V_1,7 0.70 0.7 0.6 0.36 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6AZ3_V_2 0.89 0.8 0.81 0.27 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7K00_s_a 0.68 0.9 2.28 0.31 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6S0Z_R_A 0.72 0.93 1.34 0.34 Ribosomal proteins S24e, L23 and L15e compare
4Y4O_1X_1A 7K00_s_a 0.61 0.96 1.72 0.49 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6AZ3_V_2 7K00_s_a 0.70 0.81 2.3 0.33 Ribosomal proteins S24e, L23 and L15e compare
6S0Z_R_A 7K00_s_a 0.65 0.97 1.61 0.29 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare