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All interfaces > All interologs > Interface groups > group128 > 4Y4O_1X_1A

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1X
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1X:1 [MET] 1A:71 [U] 3.44 56.97
1X:2 [LYS] 1A:143 [C] 2.91 1A:134 [G] sugar:SC 49.95
1X:2 [LYS] 1A:144 [C] 3.9 1A:133 [G] 49.95
1X:6 [ASP] 1A:71 [U] 4.55 48.31
1X:12 [VAL] 1A:1385 [G] 4.45 62.93
1X:13 [LEU] 1A:1384 [G] 4.63 1A:1360 [C] 67.93
1X:14 [SER] 1A:1384 [G] 3.37 1A:1360 [C] 94.13
1X:14 [SER] 1A:1385 [G] 2.84 94.13
1X:15 [GLU] 1A:1438 [A] 4.92 99.0
1X:16 [LYS] 1A:1385 [G] 3.12 97.5
1X:16 [LYS] 1A:1386 [U] 2.53 1A:1358 [U] 97.5
1X:16 [LYS] 1A:1387 [U] 2.79 base:SC 97.5
1X:16 [LYS] 1A:1439 [A] 4.3 97.5
1X:16 [LYS] 1A:1440 [U] 2.86 base:SC 97.5
1X:17 [ALA] 1A:1385 [G] 4.8 82.74
1X:23 [GLU] 1A:1444 [C] 4.69 1A:1435 [G] 27.98
1X:23 [GLU] 1A:1445 [C] 3.88 1A:1434 [G] 27.98
1X:25 [LYS] 1A:1444 [C] 3.25 1A:1435 [G] 57.74
1X:25 [LYS] 1A:1445 [C] 2.69 1A:1434 [G] 57.74
1X:29 [TRP] 1A:1385 [G] 4.9 1.53
1X:31 [HIS] 1A:70 [A] 2.85 31.14
1X:32 [PRO] 1A:1646 [C] 4.28 1A:1392 [G] 5.43
1X:33 [LYS] 1A:112 [U] 2.97 1A:55 [A] sugar:SC 19.46
1X:33 [LYS] 1A:113 [C] 3.79 1A:54 [G] 19.46
1X:33 [LYS] 1A:126 [C] 4.71 1A:121 [G] 19.46
1X:34 [ALA] 1A:1645 [C] 4.39 1A:1393 [G] 89.34
1X:35 [THR] 1A:142 [G] 3.02 1A:135 [C] 81.48
1X:35 [THR] 1A:143 [C] 3.64 1A:134 [G] 81.48
1X:35 [THR] 1A:1644 [C] 3.92 1A:1394 [G] 81.48
1X:35 [THR] 1A:1645 [C] 3.65 1A:1393 [G] 81.48
1X:36 [LYS] 1A:1388 [A] 2.62 1A:1648 [U] 98.89
1X:36 [LYS] 1A:1389 [G] 4.34 1A:1450 [C] 98.89
1X:36 [LYS] 1A:1644 [C] 3.67 1A:1394 [G] 98.89
1X:36 [LYS] 1A:1645 [C] 2.86 1A:1393 [G] 98.89
1X:37 [THR] 1A:136 [G] 3.52 1A:141 [C] 26.36
1X:37 [THR] 1A:141 [C] 3.09 1A:136 [G] sugar:SC 26.36
1X:37 [THR] 1A:142 [G] 3.41 1A:135 [C] 26.36
1X:37 [THR] 1A:1643 [A] 4.23 1A:1451 [U] 26.36
1X:37 [THR] 1A:1644 [C] 3.12 1A:1394 [G] 26.36
1X:38 [GLU] 1A:142 [G] 3.75 1A:135 [C] 59.79
1X:38 [GLU] 1A:143 [C] 3.53 1A:134 [G] 59.79
1X:40 [LYS] 1A:137 [G] 2.86 base:SC 73.86
1X:40 [LYS] 1A:138 [G] 3.86 73.86
1X:40 [LYS] 1A:1642 [A] 4.03 1A:1452 [U] 73.86
1X:40 [LYS] 1A:1643 [A] 4.07 1A:1451 [U] 73.86
1X:41 [ASN] 1A:136 [G] 3.21 1A:141 [C] base:SC 39.79
1X:41 [ASN] 1A:138 [G] 3.81 39.79
1X:41 [ASN] 1A:142 [G] 4.18 1A:135 [C] 39.79
1X:44 [GLU] 1A:137 [G] 4.86 72.62
1X:50 [LYS] 1A:137 [G] 3.88 63.41
1X:50 [LYS] 1A:1642 [A] 4.54 1A:1452 [U] 63.41
1X:53 [LYS] 1A:1388 [A] 4.97 1A:1648 [U] 56.07
1X:53 [LYS] 1A:1389 [G] 4.6 1A:1450 [C] 56.07
1X:53 [LYS] 1A:1444 [C] 2.77 1A:1435 [G] 56.07
1X:53 [LYS] 1A:1445 [C] 4.16 1A:1434 [G] 56.07
1X:54 [VAL] 1A:1388 [A] 4.23 1A:1648 [U] 93.63
1X:55 [ASN] 1A:1387 [U] 3.04 sugar:SC 79.3
1X:55 [ASN] 1A:1388 [A] 3.32 1A:1648 [U] 79.3
1X:55 [ASN] 1A:1443 [U] 4.27 79.3
1X:55 [ASN] 1A:1444 [C] 2.96 1A:1435 [G] 79.3
1X:56 [THR] 1A:1387 [U] 3.52 81.32
1X:56 [THR] 1A:1388 [A] 3.0 1A:1648 [U] 81.32
1X:56 [THR] 1A:1645 [C] 4.55 1A:1393 [G] 81.32
1X:56 [THR] 1A:1646 [C] 4.48 1A:1392 [G] 81.32
1X:57 [LEU] 1A:1386 [U] 3.78 1A:1358 [U] 55.53
1X:57 [LEU] 1A:1387 [U] 3.45 55.53
1X:58 [HIS] 1A:1386 [U] 4.34 1A:1358 [U] 68.56
1X:58 [HIS] 1A:1645 [C] 4.93 1A:1393 [G] 68.56
1X:58 [HIS] 1A:1646 [C] 2.69 1A:1392 [G] 68.56
1X:58 [HIS] 1A:1647 [G] 3.11 1A:1391 [C] 68.56
1X:60 [ARG] 1A:1357 [G] 2.87 sugar:SC base/AA stacks 62.14
1X:60 [ARG] 1A:1358 [U] 2.81 1A:1386 [U] 62.14
1X:62 [LYS] 1A:1358 [U] 4.68 1A:1386 [U] 91.23
1X:62 [LYS] 1A:1383 [G] 3.36 1A:1361 [C] 91.23
1X:62 [LYS] 1A:1384 [G] 2.64 1A:1360 [C] base:SC 91.23
1X:62 [LYS] 1A:1385 [G] 3.98 91.23
1X:63 [LYS] 1A:1357 [G] 3.77 6.4
1X:63 [LYS] 1A:1358 [U] 2.7 1A:1386 [U] 6.4
1X:64 [LYS] 1A:63 [A] 3.46 1A:89 [U] 73.0
1X:64 [LYS] 1A:1382 [A] 2.75 1A:1362 [U] 73.0
1X:64 [LYS] 1A:1383 [G] 4.37 1A:1361 [C] 73.0
1X:65 [ARG] 1A:63 [A] 4.28 1A:89 [U] 72.15
1X:65 [ARG] 1A:1380 [G] 3.57 1A:1364 [C] 72.15
1X:65 [ARG] 1A:1381 [U] 3.26 1A:1363 [A] 72.15
1X:66 [LEU] 1A:63 [A] 3.42 1A:89 [U] 3.2
1X:68 [ARG] 1A:482 [C] 3.38 sugar:SC 67.81
1X:68 [ARG] 1A:483 [A] 4.6 1A:497 [A] 67.81
1X:69 [TYR] 1A:63 [A] 2.92 1A:89 [U] sugar:BB 18.9
1X:69 [TYR] 1A:64 [C] 3.65 1A:88 [G] 18.9
1X:69 [TYR] 1A:482 [C] 3.21 base/AA stacks 18.9
1X:70 [LEU] 1A:63 [A] 3.5 1A:89 [U] 0.36
1X:70 [LEU] 1A:64 [C] 3.5 1A:88 [G] 0.36
1X:71 [GLY] 1A:63 [A] 3.14 1A:89 [U] 68.9
1X:71 [GLY] 1A:64 [C] 3.43 1A:88 [G] 68.9
1X:72 [LYS] 1A:56 [C] 4.58 1A:69 [G] 45.0
1X:72 [LYS] 1A:57 [G] 3.25 1A:68 [C] 45.0
1X:72 [LYS] 1A:63 [A] 3.26 1A:89 [U] 45.0
1X:72 [LYS] 1A:64 [C] 3.01 1A:88 [G] 45.0
1X:73 [ARG] 1A:57 [G] 4.71 1A:68 [C] 57.5
1X:73 [ARG] 1A:63 [A] 3.9 1A:89 [U] 57.5
1X:73 [ARG] 1A:1382 [A] 4.19 1A:1362 [U] 57.5
1X:73 [ARG] 1A:1383 [G] 2.83 1A:1361 [C] 57.5
1X:74 [PRO] 1A:57 [G] 3.61 1A:68 [C] 64.66
1X:74 [PRO] 1A:58 [U] 3.66 1A:67 [G] 64.66
1X:74 [PRO] 1A:63 [A] 4.42 1A:89 [U] 64.66
1X:75 [ASP] 1A:56 [C] 4.7 1A:69 [G] 44.46
1X:75 [ASP] 1A:57 [G] 2.73 1A:68 [C] 44.46
1X:76 [ARG] 1A:1384 [G] 4.73 1A:1360 [C] 0.0
1X:77 [LYS] 1A:1645 [C] 4.49 1A:1393 [G] 97.66
1X:77 [LYS] 1A:1646 [C] 3.09 1A:1392 [G] 97.66
1X:78 [LYS] 1A:1385 [G] 3.84 96.44
1X:78 [LYS] 1A:1386 [U] 2.77 1A:1358 [U] 96.44
1X:80 [ILE] 1A:1387 [U] 3.06 75.21
1X:82 [GLN] 1A:1445 [C] 4.16 1A:1434 [G] 75.23

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group128 4Y4O_1X_1A 1X: 50s ribosomal protein l23, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHP0 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1X_1A 7RYG_S_A 0.60 0.96 3.01 0.51 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
4Y4O_1X_1A 7O7Y_BX_B5,B8 0.73 0.89 1.46 0.24 Ribosomal proteins S24e, L23 and L15e compare
4Y4O_1X_1A 7OF0_U_A 0.49 0.94 3.88 0.15 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
4Y4O_1X_1A 6S0Z_R_A 0.73 0.97 1.59 0.43 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
4Y4O_1X_1A 6AZ3_V_2 0.97 0.82 1.6 0.4 Ribosomal proteins S24e, L23 and L15e compare
4Y4O_1X_1A 7K00_s_a 0.61 0.96 1.72 0.49 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
1VQ8_S_0 4Y4O_1X_1A 0.81 0.93 1.76 0.38 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 4Y4O_1X_1A 0.80 0.93 1.75 0.38 Ribosomal proteins S24e, L23 and L15e compare