RNAprotDB

All interfaces > All interologs > Interface groups > group128 > 4Y4O_1X_1A vs 7OF0_U_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4Y4O_1X
4Y4O_1A
7OF0_U
7OF0_A
Conserved?
1X:29 [TRP] 1A:1385 [G] U:43 [ARG] A:2370 [A] ✔
1X:60 [ARG] 1A:1357 [G] U:74 [HIS] A:2341 [C] ✔
1X:60 [ARG] 1A:1358 [U] U:74 [HIS] A:2342 [U] ✔
1X:36 [LYS] 1A:1388 [A] U:50 [ARG] A:2373 [A] ✔
1X:36 [LYS] 1A:1644 [C] U:50 [ARG] A:2418 [A] ✔
1X:36 [LYS] 1A:1645 [C] U:50 [ARG] A:2419 [C] ✔
1X:16 [LYS] 1A:1385 [G] U:32 [GLY] A:2370 [A] ✔
1X:14 [SER] 1A:1384 [G] U:30 [ARG] A:2369 [A] ✔
1X:14 [SER] 1A:1385 [G] U:30 [ARG] A:2370 [A] ✔
1X:17 [ALA] 1A:1385 [G] U:33 [VAL] A:2370 [A] ✔
1X:63 [LYS] 1A:1358 [U] U:77 [ASN] A:2342 [U] ✔
1X:80 [ILE] 1A:1387 [U] U:96 [TYR] A:2372 [U] ✔
1X:65 [ARG] 1A:1381 [U] U:79 [ARG] A:2366 [G] ✔
1X:57 [LEU] 1A:1386 [U] U:71 [ARG] A:2371 [U] ✔
1X:57 [LEU] 1A:1387 [U] U:71 [ARG] A:2372 [U] ✔
1X:32 [PRO] 1A:1646 [C] U:46 [MET] A:2420 [U] ✔
1X:35 [THR] 1A:1644 [C] U:49 [THR] A:2418 [A] ✔
1X:35 [THR] 1A:1645 [C] U:49 [THR] A:2419 [C] ✔
1X:34 [ALA] 1A:1645 [C] U:48 [MET] A:2419 [C] ✔
1X:62 [LYS] 1A:1358 [U] U:76 [SER] A:2342 [U] ✔
1X:58 [HIS] 1A:1646 [C] U:72 [VAL] A:2420 [U] ✔
1X:58 [HIS] 1A:1647 [G] U:72 [VAL] A:2421 [G] ✔
1X:77 [LYS] 1A:1645 [C] U:93 [LYS] A:2419 [C] ✔
1X:77 [LYS] 1A:1646 [C] U:93 [LYS] A:2420 [U] ✔
1X:54 [VAL] 1A:1388 [A] U:68 [VAL] A:2373 [A] ✔
1X:37 [THR] 1A:1644 [C] U:51 [VAL] A:2418 [A] ✔
1X:73 [ARG] 1A:1382 [A] U:89 [LYS] A:2367 [A] ✔
1X:73 [ARG] 1A:1383 [G] U:89 [LYS] A:2368 [C] ✔
1X:56 [THR] 1A:1387 [U] U:70 [THR] A:2372 [U] ✔
1X:56 [THR] 1A:1388 [A] U:70 [THR] A:2373 [A] ✔
1X:56 [THR] 1A:1645 [C] U:70 [THR] A:2419 [C] ✔
1X:56 [THR] 1A:1646 [C] U:70 [THR] A:2420 [U] ✔
1X:55 [ASN] 1A:1387 [U] U:69 [ARG] A:2372 [U] ✔
1X:55 [ASN] 1A:1388 [A] U:69 [ARG] A:2373 [A] ✔
1X:76 [ARG] 1A:1384 [G] U:92 [TYR] A:2369 [A] ❌ 7OF0_U_A
1X:16 [LYS] 1A:1386 [U] U:32 [GLY] A:2371 [U] ❌ 7OF0_U_A
1X:16 [LYS] 1A:1387 [U] U:32 [GLY] A:2372 [U] ❌ 7OF0_U_A
1X:63 [LYS] 1A:1357 [G] U:77 [ASN] A:2341 [C] ❌ 7OF0_U_A
1X:64 [LYS] 1A:1382 [A] U:78 [LYS] A:2367 [A] ❌ 7OF0_U_A
1X:64 [LYS] 1A:1383 [G] U:78 [LYS] A:2368 [C] ❌ 7OF0_U_A
1X:62 [LYS] 1A:1383 [G] U:76 [SER] A:2368 [C] ❌ 7OF0_U_A
1X:62 [LYS] 1A:1384 [G] U:76 [SER] A:2369 [A] ❌ 7OF0_U_A
1X:62 [LYS] 1A:1385 [G] U:76 [SER] A:2370 [A] ❌ 7OF0_U_A
1X:58 [HIS] 1A:1386 [U] U:72 [VAL] A:2371 [U] ❌ 7OF0_U_A
1X:58 [HIS] 1A:1645 [C] U:72 [VAL] A:2419 [C] ❌ 7OF0_U_A
1X:15 [GLU] 1A:1384 [G] U:31 [PRO] A:2369 [A] ❌ 4Y4O_1X_1A
1X:15 [GLU] 1A:1385 [G] U:31 [PRO] A:2370 [A] ❌ 4Y4O_1X_1A
1X:16 [LYS] 1A:1384 [G] U:32 [GLY] A:2369 [A] ❌ 4Y4O_1X_1A
1X:17 [ALA] 1A:1384 [G] U:33 [VAL] A:2369 [A] ❌ 4Y4O_1X_1A
1X:17 [ALA] 1A:1387 [U] U:33 [VAL] A:2372 [U] ❌ 4Y4O_1X_1A
1X:17 [ALA] 1A:1386 [U] U:33 [VAL] A:2371 [U] ❌ 4Y4O_1X_1A
1X:29 [TRP] 1A:1384 [G] U:43 [ARG] A:2369 [A] ❌ 4Y4O_1X_1A
1X:29 [TRP] 1A:1383 [G] U:43 [ARG] A:2368 [C] ❌ 4Y4O_1X_1A
1X:36 [LYS] 1A:1387 [U] U:50 [ARG] A:2372 [U] ❌ 4Y4O_1X_1A
1X:37 [THR] 1A:1645 [C] U:51 [VAL] A:2419 [C] ❌ 4Y4O_1X_1A
1X:57 [LEU] 1A:1385 [G] U:71 [ARG] A:2370 [A] ❌ 4Y4O_1X_1A
1X:60 [ARG] 1A:1385 [G] U:74 [HIS] A:2370 [A] ❌ 4Y4O_1X_1A
1X:64 [LYS] 1A:1358 [U] U:78 [LYS] A:2342 [U] ❌ 4Y4O_1X_1A
1X:65 [ARG] 1A:1382 [A] U:79 [ARG] A:2367 [A] ❌ 4Y4O_1X_1A
1X:66 [LEU] 1A:1381 [U] U:80 [ARG] A:2366 [G] ❌ 4Y4O_1X_1A
1X:70 [LEU] 1A:1358 [U] U:86 [ARG] A:2342 [U] ❌ 4Y4O_1X_1A
1X:70 [LEU] 1A:1357 [G] U:86 [ARG] A:2341 [C] ❌ 4Y4O_1X_1A
1X:76 [ARG] 1A:1385 [G] U:92 [TYR] A:2370 [A] ❌ 4Y4O_1X_1A
1X:80 [ILE] 1A:1385 [G] U:96 [TYR] A:2370 [A] ❌ 4Y4O_1X_1A
1X:80 [ILE] 1A:1386 [U] U:96 [TYR] A:2371 [U] ❌ 4Y4O_1X_1A
1X:69 [TYR] 1A:482 [C] U:85 [VAL] A:1780 [U] ❌ 7OF0_A:1780 no longer at interface
1X:65 [ARG] 1A:1380 [G] U:79 [ARG] A:2365 [U] ❌ 7OF0_A:2365 no longer at interface
1X:33 [LYS] 1A:126 [C] U:47 [GLU] A:1704 [U] ❌ 7OF0_U:47, 7OF0_A:1704 no longer at interface
1X:40 [LYS] 1A:1642 [A] U:54 [ARG] A:2416 [U] ❌ 7OF0_U:54, 7OF0_A:2416 no longer at interface
1X:40 [LYS] 1A:1643 [A] U:54 [ARG] A:2417 [C] ❌ 7OF0_U:54, 7OF0_A:2417 no longer at interface
1X:68 [ARG] 1A:482 [C] U:82 [HIS] A:1780 [U] ❌ 7OF0_U:82, 7OF0_A:1780 no longer at interface
1X:50 [LYS] 1A:1642 [A] U:64 [PRO] A:2416 [U] ❌ 7OF0_U:64, 7OF0_A:2416 no longer at interface
1X:37 [THR] 1A:1643 [A] U:51 [VAL] A:2417 [C] ❌ 7OF0_A:2417 no longer at interface
1X:58 [HIS] 1A:1648 [U] U:72 [VAL] A:2422 [U] ❌ 4Y4O_1A:1648 no longer at interface
1X:62 [LYS] 1A:1359 [U] U:76 [SER] A:2343 [G] ❌ 4Y4O_1A:1359 no longer at interface
1X:64 [LYS] 1A:1359 [U] U:78 [LYS] A:2343 [G] ❌ 4Y4O_1A:1359 no longer at interface
1X:64 [LYS] 1A:1379 [C] U:78 [LYS] A:2364 [C] ❌ 4Y4O_1A:1379 no longer at interface
1X:66 [LEU] 1A:487 [C] U:80 [ARG] A:1785 [C] ❌ 4Y4O_1A:487 no longer at interface
1X:66 [LEU] 1A:486 [A] U:80 [ARG] A:1784 [A] ❌ 4Y4O_1A:486 no longer at interface
1X:69 [TYR] 1A:485 [U] U:85 [VAL] A:1783 [U] ❌ 4Y4O_1A:485 no longer at interface
1X:69 [TYR] 1A:486 [A] U:85 [VAL] A:1784 [A] ❌ 4Y4O_1A:486 no longer at interface
1X:13 [LEU] 1A:1384 [G] U:29 [VAL] A:2369 [A] ❌ 7OF0_U:29 no longer at interface
1X:53 [LYS] 1A:1388 [A] U:67 [ALA] A:2373 [A] ❌ 7OF0_U:67 no longer at interface
1X:12 [VAL] 1A:1385 [G] U:28 [LEU] A:2370 [A] ❌ 7OF0_U:28 no longer at interface
1X:78 [LYS] 1A:1385 [G] U:94 [VAL] A:2370 [A] ❌ 7OF0_U:94 no longer at interface
1X:78 [LYS] 1A:1386 [U] U:94 [VAL] A:2371 [U] ❌ 7OF0_U:94 no longer at interface
1X:33 [LYS] 1A:112 [U] U:47 [GLU] A:1696 [C] ❌ 7OF0_U:47 no longer at interface
1X:33 [LYS] 1A:113 [C] U:47 [GLU] A:1697 [A] ❌ 7OF0_U:47 no longer at interface
1X:68 [ARG] 1A:483 [A] U:82 [HIS] A:1781 [A] ❌ 7OF0_U:82 no longer at interface
1X:19 [ALA] 1A:1387 [U] U:35 [GLN] A:2372 [U] ❌ 4Y4O_1X:19 no longer at interface
1X:27 [THR] 1A:1384 [G] U:41 [GLN] A:2369 [A] ❌ 4Y4O_1X:27 no longer at interface
1X:27 [THR] 1A:1385 [G] U:41 [GLN] A:2370 [A] ❌ 4Y4O_1X:27 no longer at interface
1X:59 [VAL] 1A:1385 [G] U:73 [GLN] A:2370 [A] ❌ 4Y4O_1X:59 no longer at interface
1X:59 [VAL] 1A:1358 [U] U:73 [GLN] A:2342 [U] ❌ 4Y4O_1X:59 no longer at interface
1X:59 [VAL] 1A:1386 [U] U:73 [GLN] A:2371 [U] ❌ 4Y4O_1X:59 no longer at interface
1X:61 [GLY] 1A:1358 [U] U:75 [GLY] A:2342 [U] ❌ 4Y4O_1X:61 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA 0.94 3.88 0.15 0.75 0.97 0.68 0.65 0.49 0.48 0.24 0.50


Other pairs involving 4Y4O_1X_1A or 7OF0_U_A

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_S_0 4Y4O_1X_1A 0.81 0.93 1.76 0.38 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 4Y4O_1X_1A 0.80 0.93 1.75 0.38 Ribosomal proteins S24e, L23 and L15e compare
4Y4O_1X_1A 6AZ3_V_2 0.97 0.82 1.6 0.4 Ribosomal proteins S24e, L23 and L15e compare
4Y4O_1X_1A 6S0Z_R_A 0.73 0.97 1.59 0.43 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
4Y4O_1X_1A 7K00_s_a 0.61 0.96 1.72 0.49 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
4Y4O_1X_1A 7O7Y_BX_B5,B8 0.73 0.89 1.46 0.24 Ribosomal proteins S24e, L23 and L15e compare
4Y4O_1X_1A 7OF0_U_A 0.49 0.94 3.88 0.15 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6S0Z_R_A 7OF0_U_A 0.58 0.93 4.12 0.05 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
1VQ8_S_0 7OF0_U_A 0.64 0.91 3.54 0.14 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7OF0_U_A 0.64 0.91 3.52 0.14 Ribosomal proteins S24e, L23 and L15e compare
4Y4O_1X_1A 7RYG_S_A 0.60 0.96 3.01 0.51 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare