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All interfaces > All interologs > Interface groups > group128 > 6AZ3_V_1,7

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Conservation*

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Rim - Core

Contacts -

6AZ3_V
6AZ3_1,7
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
V:27 [ALA] 7:1944 [A2M] 3.4 1:8 [U] 66.94
V:27 [ALA] 7:1945 [G] 2.69 1:7 [C] 66.94
V:28 [LYS] 7:1945 [G] 4.51 1:7 [C] 69.9
V:29 [SER] 1:1729 [A] 4.87 1:1675 [G] 20.43
V:30 [TYR] 7:1944 [A2M] 3.26 1:8 [U] 31.54
V:30 [TYR] 7:1945 [G] 2.33 1:7 [C] 31.54
V:31 [THR] 1:1730 [A] 3.91 1:1674 [U] 56.99
V:32 [ARG] 1:1672 [A] 3.01 base:SC 56.91
V:32 [ARG] 1:1730 [A] 4.93 1:1674 [U] 56.91
V:32 [ARG] 1:1731 [A] 3.1 56.91
V:32 [ARG] 1:1732 [A] 2.22 56.91
V:34 [GLN] 1:1669 [G] 4.54 60.14
V:34 [GLN] 1:1732 [A] 3.31 60.14
V:35 [PHE] 1:1670 [A] 3.04 50.22
V:35 [PHE] 1:1671 [A] 4.78 50.22
V:35 [PHE] 7:1944 [A2M] 3.14 1:8 [U] 50.22
V:35 [PHE] 7:1945 [G] 4.74 1:7 [C] 50.22
V:36 [ARG] 1:1670 [A] 3.01 5.19
V:36 [ARG] 1:1671 [A] 2.53 5.19
V:36 [ARG] 1:1672 [A] 3.41 sugar:SC base/AA stacks 5.19
V:36 [ARG] 1:1732 [A] 2.9 sugar:SC 5.19
V:36 [ARG] 1:1733 [G] 3.21 5.19
V:37 [ARG] 1:10 [A] 3.9 7:1942 [U] 37.86
V:37 [ARG] 1:11 [G] 3.86 7:1941 [C] 37.86
V:37 [ARG] 1:1670 [A] 2.95 37.86
V:37 [ARG] 1:1671 [A] 3.85 37.86
V:37 [ARG] 1:1672 [A] 3.22 37.86
V:37 [ARG] 1:1673 [G] 2.81 base:SC, base:SC 37.86
V:38 [PRO] 1:1670 [A] 3.99 62.99
V:38 [PRO] 1:1673 [G] 4.41 62.99
V:38 [PRO] 7:1943 [C] 3.61 1:9 [G] 62.99
V:38 [PRO] 7:1944 [A2M] 4.1 1:8 [U] 62.99
V:39 [HIS] 1:1672 [A] 3.66 sugar:SC 45.43
V:39 [HIS] 1:1673 [G] 3.43 base/AA stacks 45.43
V:39 [HIS] 1:1674 [U] 4.19 1:1730 [A] 45.43
V:39 [HIS] 1:1675 [G] 4.98 1:1729 [A] 45.43
V:40 [THR] 1:10 [A] 3.74 7:1942 [U] 63.11
V:40 [THR] 1:11 [G] 3.46 7:1941 [C] base:SC 63.11
V:40 [THR] 1:1673 [G] 2.69 base:BB, base:BB 63.11
V:40 [THR] 7:1942 [U] 3.3 1:10 [A] 63.11
V:40 [THR] 7:1943 [C] 3.65 1:9 [G] 63.11
V:41 [TYR] 1:11 [G] 2.91 7:1941 [C] base:BB 9.55
V:41 [TYR] 1:1673 [G] 4.87 9.55
V:41 [TYR] 7:1941 [C] 4.57 1:11 [G] 9.55
V:41 [TYR] 7:1942 [U] 2.6 1:10 [A] sugar:BB 9.55
V:42 [ARG] 1:11 [G] 3.11 7:1941 [C] sugar:SC 24.32
V:42 [ARG] 1:12 [U] 3.3 7:1938 [A] 24.32
V:42 [ARG] 1:1673 [G] 3.11 base/AA stacks 24.32
V:43 [LYS] 1:12 [U] 2.87 7:1938 [A] sugar:BB 6.87
V:43 [LYS] 1:13 [G] 3.2 7:1937 [U] sugar:SC 6.87
V:44 [PRO] 1:13 [G] 3.48 7:1937 [U] 21.96
V:45 [ALA] 1:13 [G] 3.68 7:1937 [U] 59.6
V:45 [ALA] 1:14 [U] 3.73 7:1936 [A] 59.6
V:45 [ALA] 7:1929 [G] 4.76 7:1898 [C] 59.6
V:46 [MET] 1:13 [G] 3.82 7:1937 [U] 20.72
V:46 [MET] 1:14 [U] 3.0 7:1936 [A] 20.72
V:47 [ALA] 7:1900 [U] 4.62 7:1927 [G] 39.88
V:48 [LYS] 7:1928 [U] 4.33 7:1899 [A] 42.79
V:48 [LYS] 7:1929 [G] 3.66 7:1898 [C] 42.79
V:48 [LYS] 7:1930 [C] 4.53 7:1897 [G] 42.79
V:51 [ASN] 7:1928 [U] 3.89 7:1899 [A] 50.72
V:51 [ASN] 7:1929 [G] 4.65 7:1898 [C] 50.72
V:52 [ARG] 7:1927 [G] 4.94 7:1900 [U] 27.39
V:53 [VAL] 7:1879 [U] 3.76 38.2
V:54 [THR] 7:1879 [U] 3.49 48.07
V:54 [THR] 7:1880 [C] 4.25 48.07
V:58 [LYS] 7:1903 [G] 4.99 7:1924 [C] 11.44
V:67 [ARG] 7:1841 [A] 4.29 52.79
V:70 [LEU] 1:1628 [OMG] 3.91 53.08
V:72 [THR] 1:1627 [A] 3.56 1:1603 [U] 94.59
V:72 [THR] 1:1628 [OMG] 2.8 94.59
V:73 [ASP] 1:1755 [U] 4.1 95.67
V:74 [LYS] 1:1628 [OMG] 3.13 90.08
V:74 [LYS] 1:1629 [U] 2.82 1:1601 [U] 90.08
V:74 [LYS] 1:1630 [U] 3.28 base:SC 90.08
V:74 [LYS] 1:1755 [U] 4.99 90.08
V:74 [LYS] 1:1756 [A] 3.88 90.08
V:74 [LYS] 1:1757 [U] 3.04 base:SC 90.08
V:75 [ALA] 1:1628 [OMG] 4.77 78.98
V:77 [LYS] 1:1753 [A] 4.52 1:1758 [A] 39.81
V:77 [LYS] 1:1754 [U] 3.8 39.81
V:78 [LYS] 1:1630 [U] 3.01 base:SC 42.18
V:78 [LYS] 1:1761 [C] 3.77 1:1751 [G] 42.18
V:81 [GLU] 1:1753 [A] 3.81 1:1758 [A] 21.43
V:81 [GLU] 1:1754 [U] 3.99 21.43
V:81 [GLU] 1:1763 [A] 4.75 21.43
V:82 [ASN] 1:1761 [C] 4.25 1:1751 [G] 37.98
V:82 [ASN] 1:1762 [C] 3.34 1:1750 [G] 37.98
V:82 [ASN] 1:1763 [A] 3.81 37.98
V:84 [THR] 1:1762 [C] 4.52 1:1750 [G] 64.8
V:91 [SER] 7:1894 [G] 2.65 base:SC, base:BB, base:BB 20.28
V:92 [ARG] 7:1881 [U] 4.67 7:1826 [A] 50.1
V:92 [ARG] 7:1882 [U] 3.3 7:1825 [A2M] 50.1
V:92 [ARG] 7:1894 [G] 3.34 50.1
V:94 [ASN] 7:1924 [C] 2.52 7:1903 [G] sugar:SC 85.54
V:94 [ASN] 7:1925 [C] 3.41 7:1902 [G] 85.54
V:95 [LYS] 1:1630 [U] 4.97 99.0
V:95 [LYS] 1:1631 [G] 3.05 2:17 [U] 99.0
V:95 [LYS] 1:1632 [U] 3.92 1:1771 [A] 99.0
V:96 [THR] 7:1923 [C] 4.89 7:1904 [A] 35.26
V:96 [THR] 7:1924 [C] 3.7 7:1903 [G] 35.26
V:97 [GLU] 7:1903 [G] 3.9 7:1924 [C] base:SC 71.79
V:97 [GLU] 7:1924 [C] 3.01 7:1903 [G] sugar:SC 71.79
V:97 [GLU] 7:1925 [C] 3.42 7:1902 [G] 71.79
V:99 [LYS] 7:1906 [A] 4.82 80.59
V:100 [LYS] 7:1903 [G] 4.11 7:1924 [C] 57.23
V:100 [LYS] 7:1904 [A] 2.7 7:1923 [C] base:SC 57.23
V:100 [LYS] 7:1905 [G] 4.51 7:1921 [A] 57.23
V:100 [LYS] 7:1924 [C] 3.5 7:1903 [G] base:SC 57.23
V:103 [ARG] 7:1905 [G] 3.38 7:1921 [A] 74.78
V:103 [ARG] 7:1906 [A] 2.96 base/AA stacks 74.78
V:108 [VAL] 7:1906 [A] 3.51 base:BB 86.62
V:109 [LYS] 7:1906 [A] 3.22 66.41
V:110 [ALA] 7:1906 [A] 4.33 87.8
V:111 [VAL] 1:1763 [A] 4.05 21.2
V:112 [LYS] 1:1632 [U] 4.48 1:1771 [A] 58.79
V:112 [LYS] 1:1761 [C] 2.78 1:1751 [G] 58.79
V:112 [LYS] 1:1762 [C] 3.37 1:1750 [G] 58.79
V:112 [LYS] 1:1763 [A] 3.49 58.79
V:113 [VAL] 1:1631 [G] 4.8 2:17 [U] 91.26
V:114 [ASN] 1:1630 [U] 3.34 base:SC 87.96
V:114 [ASN] 1:1631 [G] 3.25 2:17 [U] 87.96
V:114 [ASN] 1:1632 [U] 4.67 1:1771 [A] 87.96
V:114 [ASN] 1:1761 [C] 3.32 1:1751 [G] 87.96
V:115 [THR] 1:1630 [U] 3.54 87.46
V:115 [THR] 1:1631 [G] 3.11 2:17 [U] 87.46
V:116 [LEU] 1:1629 [U] 3.76 1:1601 [U] 55.57
V:116 [LEU] 1:1630 [U] 3.28 55.57
V:117 [ILE] 1:1629 [U] 4.97 1:1601 [U] 66.25
V:117 [ILE] 7:1894 [G] 4.58 66.25
V:118 [ARG] 1:1628 [OMG] 4.01 50.11
V:119 [PRO] 1:1601 [U] 3.64 1:1629 [U] 46.89
V:119 [PRO] 1:1628 [OMG] 3.43 46.89
V:119 [PRO] 1:1629 [U] 3.19 1:1601 [U] 46.89
V:123 [LYS] 7:1894 [G] 4.58 97.14
V:124 [LYS] 1:1628 [OMG] 3.82 89.37
V:124 [LYS] 1:1629 [U] 2.92 1:1601 [U] 89.37
V:126 [TYR] 1:1628 [OMG] 4.47 62.69
V:126 [TYR] 1:1629 [U] 2.35 1:1601 [U] 62.69
V:126 [TYR] 1:1630 [U] 3.49 base/AA stacks 62.69
V:128 [ARG] 1:1761 [C] 4.97 1:1751 [G] 56.2
V:128 [ARG] 1:1762 [C] 2.67 1:1750 [G] 56.2
V:128 [ARG] 1:1763 [A] 2.93 base/AA stacks 56.2
V:131 [ALA] 1:1763 [A] 3.68 38.06

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group128 6AZ3_V_1,7 V: 60s ribosomal protein l23a, putative, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) 7: rRNA 5.8s, Leishmania donovani (natural) E9B8R9 Ribosomal proteins S24e, L23 and L15e Eukaryotic large subunit ribosomal RNA & 5.8S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_V_1,7 7RYG_S_A 0.43 0.63 2.88 0.2 Ribosomal proteins S24e, L23 and L15e compare
6AZ3_V_1,7 6S0Z_R_A 0.56 0.65 1.63 0.24 Ribosomal proteins S24e, L23 and L15e compare
6AZ3_V_1,7 7O7Y_BX_B5,B8 0.62 0.92 2.44 0.33 Ribosomal proteins S24e, L23 and L15e 5.8S ribosomal RNA & Eukaryotic large subunit ribosomal RNA compare
1VQ8_S_0 6AZ3_V_1,7 0.70 0.7 0.63 0.36 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6AZ3_V_1,7 0.70 0.7 0.6 0.36 Ribosomal proteins S24e, L23 and L15e compare