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All interfaces > All interologs > Interface groups > group128 > 6AZ3_V_2

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_V
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
V:31 [THR] 2:770 [A] 4.35 56.9
V:32 [ARG] 2:768 [G] 3.05 56.9
V:33 [PRO] 2:768 [G] 3.26 41.0
V:33 [PRO] 2:769 [A] 3.27 2:767 [U] 41.0
V:33 [PRO] 2:770 [A] 3.42 41.0
V:34 [GLN] 2:768 [G] 3.11 base:SC, sugar:SC 60.1
V:34 [GLN] 2:769 [A] 3.39 2:767 [U] 60.1
V:91 [SER] 2:15 [C] 3.98 1:1635 [G] 20.2
V:93 [ALA] 2:14 [C] 4.29 1:1636 [G] 91.9
V:93 [ALA] 2:15 [C] 4.63 1:1635 [G] 91.9
V:94 [ASN] 2:13 [A] 2.9 1:1637 [A] sugar:SC 85.5
V:94 [ASN] 2:14 [C] 3.3 1:1636 [G] 85.5
V:95 [LYS] 2:13 [A] 3.34 1:1637 [A] 99.0
V:95 [LYS] 2:14 [C] 3.03 1:1636 [G] 99.0
V:96 [THR] 2:12 [G] 4.42 1:1772 [U] 35.2
V:96 [THR] 2:13 [A] 3.74 1:1637 [A] 35.2
V:99 [LYS] 2:11 [A] 4.38 1:1773 [U] 80.5
V:99 [LYS] 2:12 [G] 3.06 1:1772 [U] 80.5
V:109 [LYS] 2:11 [A] 4.22 1:1773 [U] 66.4
V:111 [VAL] 2:12 [G] 4.92 1:1772 [U] 21.2
V:115 [THR] 2:14 [C] 4.22 1:1636 [G] 87.4
V:115 [THR] 2:15 [C] 4.28 1:1635 [G] 87.4
V:117 [ILE] 2:15 [C] 3.6 1:1635 [G] 66.2
V:117 [ILE] 2:16 [G] 3.4 1:1634 [C] 66.2
V:117 [ILE] 2:17 [U] 4.58 1:1631 [G] 66.2
V:123 [LYS] 2:14 [C] 4.63 1:1636 [G] 97.1
V:123 [LYS] 2:15 [C] 2.83 1:1635 [G] 97.1

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group128 6AZ3_V_2 V: 60s ribosomal protein l23a, putative, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) E9B8R9 Ribosomal proteins S24e, L23 and L15e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1X_1A 6AZ3_V_2 0.97 0.82 1.6 0.4 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 6AZ3_V_2 0.89 0.8 0.88 0.27 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6AZ3_V_2 0.89 0.8 0.81 0.27 Ribosomal proteins S24e, L23 and L15e compare
6AZ3_V_2 6S0Z_R_A 0.94 0.8 1.4 0.27 Ribosomal proteins S24e, L23 and L15e compare
6AZ3_V_2 7K00_s_a 0.70 0.81 2.3 0.33 Ribosomal proteins S24e, L23 and L15e compare
6AZ3_V_2 7O7Y_BX_B5,B8 0.86 0.91 1.06 0.53 Ribosomal proteins S24e, L23 and L15e Eukaryotic large subunit ribosomal RNA compare
6AZ3_V_2 7RYG_S_A 0.70 0.79 3.28 0.33 Ribosomal proteins S24e, L23 and L15e compare