RNAprotDB

All interfaces > All interologs > Interface groups > group128 > 6S0Z_R_A

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6S0Z_R
6S0Z_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
R:8 [LYS] A:59 [U] 4.85 A:68 [A] 0.0
R:11 [VAL] A:1376 [G] 4.6 0.0
R:12 [ILE] A:1375 [G] 4.78 A:1351 [C] 0.0
R:13 [THR] A:1375 [G] 3.47 A:1351 [C] 0.0
R:13 [THR] A:1376 [G] 3.22 0.0
R:14 [GLU] A:1375 [G] 4.03 A:1351 [C] 0.0
R:14 [GLU] A:1429 [G] 3.32 0.0
R:14 [GLU] A:1430 [A] 4.64 0.0
R:15 [LYS] A:1376 [G] 3.36 0.0
R:15 [LYS] A:1377 [U] 3.03 A:1349 [U] 0.0
R:15 [LYS] A:1378 [U] 3.66 0.0
R:15 [LYS] A:1430 [A] 4.28 0.0
R:15 [LYS] A:1431 [U] 3.27 base:SC 0.0
R:18 [GLU] A:1429 [G] 4.85 0.0
R:22 [GLU] A:1435 [C] 4.96 A:1426 [G] 0.0
R:22 [GLU] A:1436 [C] 4.27 A:1425 [G] 0.0
R:24 [LYS] A:1435 [C] 3.0 A:1426 [G] 0.0
R:24 [LYS] A:1436 [C] 3.14 A:1425 [G] 0.0
R:30 [ASP] A:71 [A] 4.17 0.0
R:32 [ARG] A:71 [A] 3.18 base/AA stacks 0.0
R:32 [ARG] A:113 [U] 3.86 A:56 [A] sugar:SC 0.0
R:33 [VAL] A:1643 [C] 4.83 A:1384 [G] 0.0
R:34 [ASN] A:143 [U] 3.77 A:136 [A] 0.0
R:34 [ASN] A:144 [C] 3.95 A:135 [G] 0.0
R:34 [ASN] A:1642 [C] 3.75 A:1385 [G] 0.0
R:34 [ASN] A:1643 [C] 3.66 A:1384 [G] 0.0
R:35 [LYS] A:1379 [A] 3.32 A:1646 [U] 0.0
R:35 [LYS] A:1380 [G] 4.77 A:1441 [C] 0.0
R:35 [LYS] A:1642 [C] 3.66 A:1385 [G] 0.0
R:35 [LYS] A:1643 [C] 3.41 A:1384 [G] 0.0
R:36 [THR] A:142 [G] 3.1 A:137 [G] 0.0
R:36 [THR] A:143 [U] 4.36 A:136 [A] 0.0
R:36 [THR] A:1641 [G] 4.35 A:1442 [C] 0.0
R:36 [THR] A:1642 [C] 4.17 A:1385 [G] 0.0
R:37 [GLN] A:143 [U] 4.06 A:136 [A] 0.0
R:37 [GLN] A:144 [C] 3.77 A:135 [G] 0.0
R:39 [LYS] A:1640 [U] 4.24 A:1443 [A] 0.0
R:39 [LYS] A:1641 [G] 3.1 A:1442 [C] 0.0
R:40 [MET] A:142 [G] 4.17 A:137 [G] 0.0
R:40 [MET] A:143 [U] 4.54 A:136 [A] 0.0
R:54 [ASN] A:1378 [U] 2.76 sugar:SC 0.0
R:54 [ASN] A:1379 [A] 3.59 A:1646 [U] 0.0
R:54 [ASN] A:1434 [U] 4.26 0.0
R:54 [ASN] A:1435 [C] 2.91 A:1426 [G] 0.0
R:55 [ILE] A:1378 [U] 3.75 0.0
R:55 [ILE] A:1379 [A] 3.44 A:1646 [U] 0.0
R:55 [ILE] A:1643 [C] 4.37 A:1384 [G] 0.0
R:55 [ILE] A:1644 [C] 4.88 A:1383 [G] 0.0
R:56 [MET] A:1377 [U] 3.73 A:1349 [U] 0.0
R:56 [MET] A:1378 [U] 3.38 0.0
R:57 [ASN] A:1377 [U] 4.76 A:1349 [U] 0.0
R:57 [ASN] A:1644 [C] 2.96 A:1383 [G] 0.0
R:57 [ASN] A:1645 [G] 2.89 A:1382 [C] 0.0
R:57 [ASN] A:1646 [U] 4.34 A:1379 [A] 0.0
R:58 [TYR] A:1376 [G] 3.41 0.0
R:58 [TYR] A:1377 [U] 2.86 A:1349 [U] 0.0
R:59 [LYS] A:1348 [U] 3.62 A:1647 [A] 0.0
R:59 [LYS] A:1349 [U] 3.46 A:1377 [U] base:SC 0.0
R:59 [LYS] A:1646 [U] 3.97 A:1379 [A] 0.0
R:61 [LYS] A:1349 [U] 3.99 A:1377 [U] 0.0
R:61 [LYS] A:1375 [G] 3.28 A:1351 [C] base:SC, base:SC 0.0
R:61 [LYS] A:1376 [G] 3.47 0.0
R:62 [LYS] A:1349 [U] 3.53 A:1377 [U] 0.0
R:63 [LYS] A:63 [U] 4.79 A:90 [A] 0.0
R:63 [LYS] A:64 [A] 3.87 0.0
R:64 [ARG] A:1371 [U] 3.61 A:1355 [A] 0.0
R:64 [ARG] A:1372 [C] 4.37 A:1354 [G] 0.0
R:65 [MET] A:64 [A] 3.31 0.0
R:68 [TYR] A:64 [A] 3.71 0.0
R:68 [TYR] A:65 [A] 3.9 A:89 [U] base/AA stacks 0.0
R:68 [TYR] A:90 [A] 4.68 A:63 [U] 0.0
R:68 [TYR] A:502 [C] 4.01 0.0
R:69 [GLN] A:64 [A] 3.92 0.0
R:69 [GLN] A:65 [A] 3.59 A:89 [U] 0.0
R:70 [GLY] A:64 [A] 3.8 0.0
R:70 [GLY] A:65 [A] 4.55 A:89 [U] 0.0
R:71 [TYR] A:64 [A] 4.68 0.0
R:71 [TYR] A:65 [A] 4.34 A:89 [U] 0.0
R:72 [THR] A:64 [A] 4.53 0.0
R:73 [ASN] A:58 [G] 3.51 A:69 [C] 0.0
R:73 [ASN] A:59 [U] 2.87 A:68 [A] 0.0
R:74 [LYS] A:57 [C] 4.43 A:70 [G] 0.0
R:74 [LYS] A:58 [G] 3.19 A:69 [C] 0.0
R:74 [LYS] A:127 [C] 4.96 A:122 [G] 0.0
R:75 [ARG] A:1376 [G] 3.63 0.0
R:76 [ARG] A:1643 [C] 3.87 A:1384 [G] 0.0
R:76 [ARG] A:1644 [C] 2.57 A:1383 [G] 0.0
R:77 [LYS] A:1376 [G] 4.02 0.0
R:77 [LYS] A:1377 [U] 2.8 A:1349 [U] 0.0
R:79 [ILE] A:1378 [U] 3.63 0.0
R:81 [THR] A:1436 [C] 3.95 A:1425 [G] 0.0
R:83 [LYS] A:1640 [U] 4.71 A:1443 [A] 0.0

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group128 6S0Z_R_A R: 50s ribosomal protein l23, Staphylococcus aureus (natural) A: 23s ribosomal RNA, Staphylococcus aureus (natural) W8TUB4 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1X_1A 6S0Z_R_A 0.73 0.97 1.59 0.43 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6AZ3_V_2 6S0Z_R_A 0.94 0.8 1.4 0.27 Ribosomal proteins S24e, L23 and L15e compare
6S0Z_R_A 7RYG_S_A 0.74 0.98 1.83 0.31 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6S0Z_R_A 7OF0_U_A 0.58 0.93 4.12 0.05 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6S0Z_R_A 7K00_s_a 0.65 0.97 1.61 0.29 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6S0Z_R_A 7O7Y_BX_B5,B8 0.67 0.89 1.71 0.19 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 6S0Z_R_A 0.72 0.93 1.29 0.34 Ribosomal proteins S24e, L23 and L15e compare
6AZ3_V_1,7 6S0Z_R_A 0.56 0.65 1.63 0.24 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 6S0Z_R_A 0.72 0.93 1.34 0.34 Ribosomal proteins S24e, L23 and L15e compare