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All interfaces > All interologs > Interface groups > group128 > 7K00_s_a

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_s
7K00_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
s:1 [MET] a:138 [U] 4.49 a:141 [G] 49.07
s:1 [MET] a:139 [U] 3.87 49.07
s:1 [MET] a:141 [G] 3.28 a:138 [U] 49.07
s:1 [MET] a:142 [A] 2.97 a:137 [U] sugar:BB 49.07
s:1 [MET] a:143 [C] 2.72 a:136 [G] sugar:BB 49.07
s:2 [ILE] a:142 [A] 4.5 a:137 [U] 60.25
s:2 [ILE] a:143 [C] 4.3 a:136 [G] 60.25
s:3 [ARG] a:143 [C] 3.91 a:136 [G] 34.47
s:3 [ARG] a:144 [A] 3.61 a:135 [U] sugar:SC 34.47
s:15 [HIS] a:1338 [G] 4.09 a:1314 [C] 63.48
s:15 [HIS] a:1339 [G] 2.66 63.48
s:16 [VAL] a:1338 [G] 4.17 a:1314 [C] 64.75
s:17 [SER] a:1338 [G] 3.31 a:1314 [C] 92.36
s:17 [SER] a:1339 [G] 2.54 92.36
s:18 [GLU] a:1392 [A] 3.1 99.0
s:19 [LYS] a:1339 [G] 3.43 98.88
s:19 [LYS] a:1340 [U] 2.69 a:1312 [U] 98.88
s:19 [LYS] a:1341 [G] 3.19 base:SC 98.88
s:19 [LYS] a:1393 [A] 4.01 98.88
s:19 [LYS] a:1394 [U] 2.8 base:SC 98.88
s:19 [LYS] a:1395 [A] 4.99 a:1390 [U] 98.88
s:20 [ALA] a:1339 [G] 4.48 83.68
s:26 [LYS] a:1390 [U] 3.33 a:1395 [A] sugar:SC 32.33
s:26 [LYS] a:1391 [U] 4.55 32.33
s:27 [SER] a:1398 [C] 4.96 a:1389 [G] 5.57
s:27 [SER] a:1399 [C] 4.86 a:1388 [G] 5.57
s:29 [THR] a:1341 [G] 4.25 47.59
s:36 [LYS] a:1600 [C] 4.08 a:1346 [G] 3.6
s:38 [ALA] a:1599 [U] 4.5 a:1347 [A] 90.59
s:39 [THR] a:1598 [A] 4.15 a:1348 [C] 80.7
s:39 [THR] a:1599 [U] 3.24 a:1347 [A] 80.7
s:40 [LYS] a:1342 [A] 2.56 a:1602 [U] 97.61
s:40 [LYS] a:1343 [G] 4.79 a:1404 [C] 97.61
s:40 [LYS] a:1598 [A] 4.38 a:1348 [C] 97.61
s:40 [LYS] a:1599 [U] 2.83 a:1347 [A] 97.61
s:41 [ALA] a:1597 [A] 4.98 a:1405 [U] 27.41
s:44 [LYS] a:1596 [A] 4.52 a:1406 [U] 71.52
s:58 [VAL] a:1342 [A] 4.55 a:1602 [U] 90.12
s:59 [ASN] a:1341 [G] 3.06 sugar:SC 78.63
s:59 [ASN] a:1342 [A] 3.39 a:1602 [U] 78.63
s:59 [ASN] a:1397 [U] 4.24 78.63
s:59 [ASN] a:1398 [C] 3.02 a:1389 [G] 78.63
s:60 [THR] a:1341 [G] 3.49 79.23
s:60 [THR] a:1342 [A] 3.2 a:1602 [U] 79.23
s:60 [THR] a:1599 [U] 4.62 a:1347 [A] 79.23
s:60 [THR] a:1600 [C] 4.35 a:1346 [G] 79.23
s:61 [LEU] a:1340 [U] 3.82 a:1312 [U] 52.76
s:61 [LEU] a:1341 [G] 3.48 52.76
s:62 [VAL] a:1340 [U] 4.64 a:1312 [U] 64.7
s:62 [VAL] a:1600 [C] 4.16 a:1346 [G] 64.7
s:62 [VAL] a:1601 [G] 3.33 a:1345 [C] 64.7
s:62 [VAL] a:1602 [U] 4.53 a:1342 [A] 64.7
s:64 [LYS] a:1312 [U] 4.69 a:1340 [U] 52.31
s:64 [LYS] a:1601 [G] 2.75 a:1345 [C] 52.31
s:64 [LYS] a:1602 [U] 2.48 a:1342 [A] 52.31
s:66 [LYS] a:1312 [U] 3.95 a:1340 [U] 93.14
s:66 [LYS] a:1314 [C] 4.7 a:1338 [G] 93.14
s:66 [LYS] a:1337 [G] 3.66 a:1315 [C] 93.14
s:66 [LYS] a:1338 [G] 2.75 a:1314 [C] base:SC, base:SC 93.14
s:66 [LYS] a:1339 [G] 3.71 93.14
s:67 [VAL] a:1312 [U] 3.44 a:1340 [U] 17.64
s:68 [LYS] a:1336 [A] 3.17 a:1316 [U] 71.68
s:68 [LYS] a:1337 [G] 4.35 a:1315 [C] 71.68
s:69 [ARG] a:1335 [C] 3.79 a:1317 [G] 75.37
s:70 [HIS] a:63 [A] 3.49 a:91 [A] 0.0
s:70 [HIS] a:64 [A] 3.58 a:90 [U] base/AA stacks 0.0
s:70 [HIS] a:91 [A] 3.55 a:63 [A] 0.0
s:73 [ARG] a:64 [A] 4.33 a:90 [U] 22.1
s:73 [ARG] a:65 [U] 3.48 a:89 [A] 22.1
s:73 [ARG] a:456 [C] 3.78 base/AA stacks 22.1
s:74 [ILE] a:64 [A] 4.36 a:90 [U] 1.94
s:74 [ILE] a:65 [U] 3.86 a:89 [A] 1.94
s:75 [GLY] a:64 [A] 3.12 a:90 [U] 70.86
s:75 [GLY] a:65 [U] 3.57 a:89 [A] 70.86
s:76 [ARG] a:64 [A] 3.38 a:90 [U] 32.68
s:76 [ARG] a:65 [U] 3.21 a:89 [A] 32.68
s:77 [ARG] a:63 [A] 3.16 a:91 [A] sugar:SC 63.74
s:77 [ARG] a:64 [A] 3.53 a:90 [U] 63.74
s:77 [ARG] a:1336 [A] 4.53 a:1316 [U] 63.74
s:77 [ARG] a:1337 [G] 3.14 a:1315 [C] 63.74
s:78 [SER] a:58 [G] 3.22 a:69 [C] 59.43
s:78 [SER] a:59 [U] 4.75 a:68 [G] 59.43
s:78 [SER] a:64 [A] 4.2 a:90 [U] 59.43
s:79 [ASP] a:58 [G] 4.16 a:69 [C] 40.43
s:80 [TRP] a:1339 [G] 4.95 1.39
s:81 [LYS] a:1599 [U] 4.1 a:1347 [A] 97.03
s:81 [LYS] a:1600 [C] 2.35 a:1346 [G] 97.03
s:82 [LYS] a:1339 [G] 3.66 91.86
s:82 [LYS] a:1340 [U] 2.57 a:1312 [U] 91.86
s:84 [TYR] a:1339 [G] 4.29 69.31
s:84 [TYR] a:1340 [U] 2.68 a:1312 [U] 69.31
s:84 [TYR] a:1341 [G] 3.37 base/AA stacks 69.31
s:86 [THR] a:1341 [G] 4.79 81.81
s:86 [THR] a:1399 [C] 4.61 a:1388 [G] 81.81

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group128 7K00_s_a s: 50s ribosomal protein l23, Escherichia coli (natural) a: 23s rRNA, Escherichia coli (natural) P0ADZ0 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_V_2 7K00_s_a 0.70 0.81 2.3 0.33 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7K00_s_a 0.69 0.9 2.2 0.31 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7K00_s_a 0.68 0.9 2.28 0.31 Ribosomal proteins S24e, L23 and L15e compare
6S0Z_R_A 7K00_s_a 0.65 0.97 1.61 0.29 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
4Y4O_1X_1A 7K00_s_a 0.61 0.96 1.72 0.49 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare