RNAprotDB

All interfaces > All interologs > Interface groups > group128 > 7O7Y_BX_B5,B8

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7O7Y_BX
7O7Y_B5,B8
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BX:39 [LYS] B5:1 [C] 3.31 B8:4964 [U] 69.26
BX:39 [LYS] B5:2 [G] 4.59 B8:4963 [C] 69.26
BX:41 [ARG] B8:4956 [A] 4.17 B5:8 [U] 44.08
BX:41 [ARG] B8:4957 [G] 3.27 B5:7 [C] 44.08
BX:42 [THR] B5:3814 [G] 3.83 16.54
BX:44 [PRO] B5:3812 [G] 3.51 45.91
BX:44 [PRO] B5:3813 [A] 3.93 B5:3811 [U] 45.91
BX:44 [PRO] B5:3814 [G] 3.56 45.91
BX:45 [THR] B5:3812 [G] 3.11 43.01
BX:45 [THR] B5:3813 [A] 2.76 B5:3811 [U] 43.01
BX:46 [PHE] B5:2315 [A] 3.51 66.85
BX:46 [PHE] B5:2316 [A] 3.68 B5:2311 [U] 66.85
BX:46 [PHE] B5:3813 [A] 4.99 B5:3811 [U] 66.85
BX:46 [PHE] B8:4956 [A] 3.48 B5:8 [U] 66.85
BX:46 [PHE] B8:4957 [G] 4.81 B5:7 [C] 66.85
BX:47 [ARG] B5:2315 [A] 4.08 31.99
BX:47 [ARG] B5:2316 [A] 3.04 B5:2311 [U] 31.99
BX:47 [ARG] B5:2317 [G] 3.4 sugar:SC base/AA stacks 31.99
BX:48 [ARG] B5:10 [A] 3.99 B8:4954 [U] 52.3
BX:48 [ARG] B5:11 [G] 3.82 B8:4953 [C] 52.3
BX:48 [ARG] B5:2315 [A] 3.31 52.3
BX:48 [ARG] B5:2316 [A] 3.16 B5:2311 [U] 52.3
BX:48 [ARG] B5:2317 [G] 2.72 52.3
BX:48 [ARG] B5:2318 [G] 2.74 base:SC, base:SC 52.3
BX:49 [PRO] B5:2315 [A] 3.77 64.53
BX:49 [PRO] B5:2318 [G] 4.86 64.53
BX:49 [PRO] B8:4955 [G] 3.26 B5:9 [C] 64.53
BX:49 [PRO] B8:4956 [A] 3.9 B5:8 [U] 64.53
BX:50 [LYS] B5:2317 [G] 3.08 sugar:SC 61.64
BX:50 [LYS] B5:2318 [G] 3.18 sugar:SC 61.64
BX:50 [LYS] B5:2319 [G] 3.78 B5:2344 [C] 61.64
BX:50 [LYS] B8:4954 [U] 4.72 B5:10 [A] 61.64
BX:50 [LYS] B8:4955 [G] 4.97 B5:9 [C] 61.64
BX:51 [THR] B5:10 [A] 4.68 B8:4954 [U] 33.68
BX:51 [THR] B5:11 [G] 3.54 B8:4953 [C] base:SC 33.68
BX:51 [THR] B5:2318 [G] 2.73 base:SC, base:BB, base:BB 33.68
BX:51 [THR] B8:4954 [U] 3.34 B5:10 [A] 33.68
BX:51 [THR] B8:4955 [G] 3.73 B5:9 [C] 33.68
BX:52 [LEU] B5:11 [G] 3.28 B8:4953 [C] base:BB 19.34
BX:52 [LEU] B5:12 [A] 4.82 B8:4952 [U] 19.34
BX:52 [LEU] B5:2318 [G] 4.56 19.34
BX:52 [LEU] B5:2340 [C] 3.7 B5:2324 [G] 19.34
BX:52 [LEU] B8:4953 [C] 3.68 B5:11 [G] 19.34
BX:52 [LEU] B8:4954 [U] 2.98 B5:10 [A] sugar:BB 19.34
BX:53 [ARG] B5:11 [G] 3.8 B8:4953 [C] sugar:SC 52.67
BX:53 [ARG] B5:12 [A] 3.54 B8:4952 [U] 52.67
BX:53 [ARG] B5:13 [U] 4.32 52.67
BX:53 [ARG] B5:2318 [G] 3.14 base/AA stacks 52.67
BX:54 [LEU] B5:12 [A] 4.0 B8:4952 [U] sugar:BB 3.71
BX:54 [LEU] B5:13 [U] 4.06 3.71
BX:54 [LEU] B5:14 [C] 3.45 B8:4951 [G] 3.71
BX:54 [LEU] B8:4953 [C] 4.12 B5:11 [G] 3.71
BX:55 [ARG] B5:13 [U] 4.95 19.49
BX:55 [ARG] B5:14 [C] 4.02 B8:4951 [G] 19.49
BX:55 [ARG] B5:15 [A] 4.95 B8:4950 [U] 19.49
BX:55 [ARG] B8:4924 [C] 3.16 B8:4942 [G] sugar:SC 19.49
BX:55 [ARG] B8:4925 [C] 3.7 B8:4941 [G] 19.49
BX:56 [ARG] B5:13 [U] 2.75 79.45
BX:56 [ARG] B5:14 [C] 2.91 B8:4951 [G] 79.45
BX:56 [ARG] B5:15 [A] 3.34 B8:4950 [U] 79.45
BX:56 [ARG] B8:4943 [C] 3.35 B8:4923 [G] 79.45
BX:56 [ARG] B8:4944 [U] 2.91 B8:4922 [G] 79.45
BX:56 [ARG] B8:4945 [A] 4.34 79.45
BX:57 [GLN] B5:14 [C] 3.98 B8:4951 [G] 19.34
BX:57 [GLN] B5:15 [A] 2.86 B8:4950 [U] 19.34
BX:58 [PRO] B5:15 [A] 3.58 B8:4950 [U] 68.81
BX:58 [PRO] B5:16 [G] 3.55 B8:4949 [C] 68.81
BX:59 [LYS] B5:15 [A] 3.43 B8:4950 [U] sugar:SC 52.15
BX:59 [LYS] B5:16 [G] 2.73 B8:4949 [C] 52.15
BX:59 [LYS] B5:126 [C] 4.33 B5:142 [G] 52.15
BX:59 [LYS] B5:127 [G] 4.37 B5:141 [C] 52.15
BX:60 [TYR] B5:16 [G] 3.79 B8:4949 [C] 24.98
BX:60 [TYR] B5:17 [A] 3.07 B8:4948 [C] 24.98
BX:62 [ARG] B5:16 [G] 3.06 B8:4949 [C] 40.01
BX:62 [ARG] B5:17 [A] 4.24 B8:4948 [C] 40.01
BX:62 [ARG] B8:4943 [C] 4.05 B8:4923 [G] 40.01
BX:63 [LYS] B8:4942 [G] 4.42 B8:4924 [C] 36.58
BX:63 [LYS] B8:4943 [C] 3.48 B8:4923 [G] 36.58
BX:65 [ALA] B8:4942 [G] 4.63 B8:4924 [C] 30.34
BX:66 [PRO] B8:4941 [G] 3.33 B8:4925 [C] 26.22
BX:66 [PRO] B8:4942 [G] 3.57 B8:4924 [C] 26.22
BX:67 [ARG] B8:4906 [C] 4.78 3.3
BX:67 [ARG] B8:4907 [U] 4.67 B8:4852 [A] 3.3
BX:67 [ARG] B8:4941 [G] 3.63 B8:4925 [C] 3.3
BX:67 [ARG] B8:4942 [G] 2.9 B8:4924 [C] 3.3
BX:68 [ARG] B8:4868 [G] 2.82 B8:4904 [C] 17.12
BX:68 [ARG] B8:4941 [G] 4.51 B8:4925 [C] 17.12
BX:69 [ASN] B8:4940 [G] 3.85 B8:4926 [C] 21.4
BX:69 [ASN] B8:4941 [G] 3.99 B8:4925 [C] 21.4
BX:70 [LYS] B8:4867 [A] 3.21 19.29
BX:70 [LYS] B8:4868 [G] 3.48 B8:4904 [C] 19.29
BX:70 [LYS] B8:4905 [A] 4.18 19.29
BX:70 [LYS] B8:4906 [C] 2.87 19.29
BX:81 [LEU] B5:2278 [G] 3.74 54.53
BX:83 [THR] B5:2277 [G] 3.56 B5:2253 [C] 93.76
BX:83 [THR] B5:2278 [G] 2.76 93.76
BX:84 [GLU] B5:2369 [C] 3.83 base:SC 93.61
BX:85 [SER] B5:2277 [G] 4.33 B5:2253 [C] 90.15
BX:85 [SER] B5:2278 [G] 3.62 90.15
BX:85 [SER] B5:2369 [C] 4.33 90.15
BX:85 [SER] B5:2370 [A] 2.68 base:SC 90.15
BX:86 [ALA] B5:2278 [G] 4.65 78.05
BX:89 [LYS] B5:2280 [C] 2.84 base:SC 42.38
BX:89 [LYS] B5:2375 [C] 3.22 B5:2366 [G] sugar:SC 42.38
BX:93 [ASN] B5:2375 [C] 3.58 B5:2366 [G] 26.65
BX:93 [ASN] B5:2376 [C] 3.48 B5:2365 [G] 26.65
BX:101 [ASP] B8:4867 [A] 4.75 51.68
BX:102 [VAL] B5:2623 [C] 4.01 B5:2285 [G] 30.7
BX:102 [VAL] B8:4919 [U] 3.64 30.7
BX:103 [LYS] B8:4867 [A] 4.64 47.07
BX:103 [LYS] B8:4919 [U] 3.91 47.07
BX:104 [ALA] B5:2622 [C] 4.56 B5:2286 [G] 92.34
BX:105 [ASN] B5:2621 [G] 3.51 87.38
BX:105 [ASN] B5:2622 [C] 3.24 B5:2286 [G] 87.38
BX:105 [ASN] B8:4939 [G] 2.87 B8:4927 [C] 87.38
BX:106 [LYS] B5:2281 [A] 2.69 B5:2625 [U] 99.0
BX:106 [LYS] B5:2282 [G] 4.32 B5:2381 [U] 99.0
BX:106 [LYS] B5:2621 [G] 3.44 99.0
BX:106 [LYS] B5:2622 [C] 2.8 B5:2286 [G] 99.0
BX:107 [HIS] B5:2619 [G] 4.44 B5:2383 [C] 40.57
BX:107 [HIS] B5:2620 [G] 3.14 B5:2382 [C] 40.57
BX:107 [HIS] B5:2621 [G] 3.47 40.57
BX:107 [HIS] B8:4938 [C] 3.56 B8:4928 [G] 40.57
BX:107 [HIS] B8:4939 [G] 4.26 B8:4927 [C] 40.57
BX:108 [GLN] B8:4939 [G] 3.13 B8:4927 [C] 65.88
BX:108 [GLN] B8:4940 [G] 2.64 B8:4926 [C] 65.88
BX:123 [LYS] B5:2375 [C] 3.41 B5:2366 [G] 52.49
BX:123 [LYS] B5:2376 [C] 2.81 B5:2365 [G] 52.49
BX:124 [VAL] B5:2281 [A] 4.66 B5:2625 [U] 89.82
BX:125 [ASN] B5:2280 [C] 2.8 sugar:SC 81.98
BX:125 [ASN] B5:2281 [A] 3.47 B5:2625 [U] 81.98
BX:125 [ASN] B5:2374 [C] 3.97 81.98
BX:125 [ASN] B5:2375 [C] 2.61 B5:2366 [G] 81.98
BX:126 [THR] B5:2280 [C] 3.46 89.52
BX:126 [THR] B5:2281 [A] 3.14 B5:2625 [U] 89.52
BX:126 [THR] B5:2622 [C] 4.15 B5:2286 [G] 89.52
BX:126 [THR] B5:2623 [C] 4.63 B5:2285 [G] 89.52
BX:127 [LEU] B5:2279 [U] 3.83 B5:2251 [U] 51.43
BX:127 [LEU] B5:2280 [C] 3.32 51.43
BX:128 [ILE] B5:2279 [U] 4.67 B5:2251 [U] 67.73
BX:128 [ILE] B5:2623 [C] 3.96 B5:2285 [G] 67.73
BX:128 [ILE] B5:2624 [G] 3.24 B5:2284 [C] 67.73
BX:128 [ILE] B5:2625 [U] 4.6 B5:2281 [A] 67.73
BX:129 [ARG] B5:2278 [G] 4.3 60.22
BX:130 [PRO] B5:2251 [U] 4.36 B5:2279 [U] 49.48
BX:130 [PRO] B5:2278 [G] 4.0 49.48
BX:130 [PRO] B5:2279 [U] 3.14 B5:2251 [U] 49.48
BX:131 [ASP] B8:4854 [G] 4.87 B8:4865 [C] 49.01
BX:133 [GLU] B8:4855 [C] 4.26 B8:4864 [G] 7.94
BX:134 [LYS] B5:2622 [C] 4.37 B5:2286 [G] 95.9
BX:134 [LYS] B5:2623 [C] 2.56 B5:2285 [G] 95.9
BX:135 [LYS] B5:2278 [G] 4.12 86.12
BX:135 [LYS] B5:2279 [U] 2.86 B5:2251 [U] 86.12
BX:137 [TYR] B5:2278 [G] 4.45 64.22
BX:137 [TYR] B5:2279 [U] 2.7 B5:2251 [U] 64.22
BX:137 [TYR] B5:2280 [C] 3.25 base/AA stacks 64.22
BX:139 [ARG] B5:2376 [C] 2.7 B5:2365 [G] 65.72
BX:139 [ARG] B5:2377 [C] 3.03 B5:2364 [G] 65.72

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group128 7O7Y_BX_B5,B8 BX: Ul23, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) B8: 5.8s rRNA, Oryctolagus cuniculus (natural) G1SE76 Ribosomal proteins S24e, L23 and L15e Eukaryotic large subunit ribosomal RNA & 5.8S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1X_1A 7O7Y_BX_B5,B8 0.73 0.89 1.46 0.24 Ribosomal proteins S24e, L23 and L15e compare
6S0Z_R_A 7O7Y_BX_B5,B8 0.67 0.89 1.71 0.19 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7O7Y_BX_B5,B8 0.81 0.94 1.11 0.41 Ribosomal proteins S24e, L23 and L15e compare
1YHQ_S_0 7O7Y_BX_B5,B8 0.81 0.94 1.03 0.41 Ribosomal proteins S24e, L23 and L15e compare
6AZ3_V_1,7 7O7Y_BX_B5,B8 0.62 0.92 2.44 0.33 Ribosomal proteins S24e, L23 and L15e 5.8S ribosomal RNA & Eukaryotic large subunit ribosomal RNA compare
6AZ3_V_2 7O7Y_BX_B5,B8 0.86 0.91 1.06 0.53 Ribosomal proteins S24e, L23 and L15e Eukaryotic large subunit ribosomal RNA compare