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All interfaces > All interologs > Interface groups > group128 > 7OF0_U_A

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7OF0_U
7OF0_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
U:4 [ASN] A:1695 [C] 2.82 sugar:BB 76.77
U:4 [ASN] A:1696 [C] 3.34 76.77
U:5 [VAL] A:1695 [C] 4.62 78.62
U:5 [VAL] A:1696 [C] 3.86 78.62
U:6 [VAL] A:1696 [C] 4.15 21.43
U:6 [VAL] A:1697 [A] 4.84 A:1703 [C] 21.43
U:7 [TYR] A:1705 [A] 4.13 80.65
U:8 [PRO] A:1705 [A] 4.67 99.0
U:9 [LEU] A:1705 [A] 3.66 73.92
U:9 [LEU] A:1706 [C] 3.63 73.92
U:10 [TYR] A:1705 [A] 4.88 70.85
U:30 [ARG] A:2369 [A] 4.79 69.05
U:30 [ARG] A:2370 [A] 4.69 69.05
U:31 [PRO] A:2369 [A] 4.4 77.47
U:31 [PRO] A:2370 [A] 3.97 77.47
U:32 [GLY] A:2369 [A] 3.15 19.08
U:32 [GLY] A:2370 [A] 3.0 19.08
U:33 [VAL] A:2369 [A] 4.94 3.94
U:33 [VAL] A:2370 [A] 4.16 3.94
U:33 [VAL] A:2371 [U] 4.26 A:2342 [U] 3.94
U:33 [VAL] A:2372 [U] 4.66 3.94
U:35 [GLN] A:2372 [U] 2.72 base:SC 51.02
U:41 [GLN] A:2369 [A] 4.64 53.13
U:41 [GLN] A:2370 [A] 2.68 53.13
U:43 [ARG] A:2368 [C] 4.83 A:2345 [G] 52.89
U:43 [ARG] A:2369 [A] 3.04 52.89
U:43 [ARG] A:2370 [A] 4.3 52.89
U:46 [MET] A:2420 [U] 4.37 A:2376 [A] 55.7
U:48 [MET] A:2419 [C] 4.75 A:2377 [G] 95.64
U:49 [THR] A:2418 [A] 3.8 A:2378 [C] 84.66
U:49 [THR] A:2419 [C] 3.25 A:2377 [G] 84.66
U:50 [ARG] A:2372 [U] 4.93 84.73
U:50 [ARG] A:2373 [A] 2.62 A:2422 [U] 84.73
U:50 [ARG] A:2418 [A] 3.82 A:2378 [C] 84.73
U:50 [ARG] A:2419 [C] 2.6 A:2377 [G] 84.73
U:51 [VAL] A:2418 [A] 3.62 A:2378 [C] 8.99
U:51 [VAL] A:2419 [C] 4.77 A:2377 [G] 8.99
U:68 [VAL] A:2373 [A] 4.99 A:2422 [U] 95.21
U:69 [ARG] A:2372 [U] 3.14 sugar:SC 77.96
U:69 [ARG] A:2373 [A] 3.39 A:2422 [U] 77.96
U:70 [THR] A:2372 [U] 3.7 94.32
U:70 [THR] A:2373 [A] 3.4 A:2422 [U] 94.32
U:70 [THR] A:2419 [C] 4.09 A:2377 [G] 94.32
U:70 [THR] A:2420 [U] 4.08 A:2376 [A] 94.32
U:71 [ARG] A:2370 [A] 3.29 29.07
U:71 [ARG] A:2371 [U] 3.75 A:2342 [U] 29.07
U:71 [ARG] A:2372 [U] 3.55 29.07
U:72 [VAL] A:2420 [U] 3.84 A:2376 [A] 69.99
U:72 [VAL] A:2421 [G] 3.47 A:2375 [C] 69.99
U:72 [VAL] A:2422 [U] 4.27 A:2373 [A] 69.99
U:73 [GLN] A:2342 [U] 4.93 A:2371 [U] 19.08
U:73 [GLN] A:2370 [A] 2.98 sugar:SC base/AA stacks 19.08
U:73 [GLN] A:2371 [U] 3.41 A:2342 [U] base:SC 19.08
U:74 [HIS] A:2341 [C] 3.0 18.42
U:74 [HIS] A:2342 [U] 3.01 A:2371 [U] base/AA stacks 18.42
U:74 [HIS] A:2370 [A] 4.01 18.42
U:75 [GLY] A:2342 [U] 4.28 A:2371 [U] 82.49
U:76 [SER] A:2342 [U] 3.67 A:2371 [U] 67.72
U:76 [SER] A:2343 [G] 3.75 A:2423 [C] 67.72
U:77 [ASN] A:2342 [U] 2.74 A:2371 [U] 4.77
U:78 [LYS] A:2342 [U] 3.57 A:2371 [U] 56.55
U:78 [LYS] A:2343 [G] 3.08 A:2423 [C] sugar:SC 56.55
U:78 [LYS] A:2364 [C] 4.36 A:2349 [G] 56.55
U:79 [ARG] A:2366 [G] 3.08 A:2347 [C] 66.21
U:79 [ARG] A:2367 [A] 3.67 A:2346 [U] 66.21
U:80 [ARG] A:1784 [A] 3.73 A:1793 [G] 36.15
U:80 [ARG] A:1785 [C] 3.25 A:1792 [G] 36.15
U:80 [ARG] A:2366 [G] 4.44 A:2347 [C] 36.15
U:83 [ARG] A:1781 [A] 4.66 A:1795 [A] 46.77
U:83 [ARG] A:1783 [U] 4.78 A:1794 [A] 46.77
U:83 [ARG] A:1784 [A] 4.24 A:1793 [G] 46.77
U:84 [ASN] A:1784 [A] 2.49 A:1793 [G] sugar:SC 39.15
U:84 [ASN] A:1785 [C] 4.41 A:1792 [G] 39.15
U:85 [VAL] A:1783 [U] 3.4 A:1794 [A] 2.3
U:85 [VAL] A:1784 [A] 4.27 A:1793 [G] 2.3
U:86 [ARG] A:2341 [C] 4.89 37.95
U:86 [ARG] A:2342 [U] 3.52 A:2371 [U] 37.95
U:89 [LYS] A:2367 [A] 3.43 A:2346 [U] 37.34
U:89 [LYS] A:2368 [C] 4.56 A:2345 [G] 37.34
U:92 [TYR] A:2370 [A] 3.53 base:SC 36.94
U:93 [LYS] A:2419 [C] 4.24 A:2377 [G] 96.18
U:93 [LYS] A:2420 [U] 2.64 A:2376 [A] 96.18
U:96 [TYR] A:2370 [A] 4.79 66.42
U:96 [TYR] A:2371 [U] 4.88 A:2342 [U] 66.42
U:96 [TYR] A:2372 [U] 3.49 base/AA stacks 66.42

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group128 7OF0_U_A U: 39s ribosomal protein l23, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) Q16540 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_S_0 7OF0_U_A 0.64 0.91 3.52 0.14 Ribosomal proteins S24e, L23 and L15e compare
1VQ8_S_0 7OF0_U_A 0.64 0.91 3.54 0.14 Ribosomal proteins S24e, L23 and L15e compare
4Y4O_1X_1A 7OF0_U_A 0.49 0.94 3.88 0.15 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare
6S0Z_R_A 7OF0_U_A 0.58 0.93 4.12 0.05 Ribosomal proteins S24e, L23 and L15e Bacterial large subunit ribosomal RNA compare