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All interfaces > All interologs > Interface groups > group129 > 1VQ8_B_0

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Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_B
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:1 [PRO] 0:2544 [G] 4.58 0:2614 [C] 39.86
B:1 [PRO] 0:2591 [C] 3.97 0:1996 [U] 39.86
B:2 [GLN] 0:2544 [G] 4.92 0:2614 [C] 65.45
B:2 [GLN] 0:2545 [U] 2.47 0:2613 [G] 65.45
B:2 [GLN] 0:2546 [U] 4.13 0:2610 [U] 65.45
B:2 [GLN] 0:2547 [C] 4.08 0:2609 [G] 65.45
B:2 [GLN] 0:2582 [G] 4.92 0:2596 [A] 65.45
B:2 [GLN] 0:2609 [G] 4.75 0:2547 [C] 65.45
B:2 [GLN] 0:2610 [U] 4.58 0:2546 [U] 65.45
B:3 [PRO] 0:2545 [U] 4.11 0:2613 [G] 0.0
B:3 [PRO] 0:2582 [G] 3.41 0:2596 [A] 0.0
B:3 [PRO] 0:2583 [A] 3.78 0:2595 [U] 0.0
B:4 [SER] 0:2581 [U] 3.17 61.51
B:4 [SER] 0:2582 [G] 2.6 0:2596 [A] 61.51
B:5 [ARG] 0:2546 [U] 4.68 0:2610 [U] 65.16
B:5 [ARG] 0:2547 [C] 2.58 0:2609 [G] 65.16
B:5 [ARG] 0:2548 [C] 2.56 0:2606 [G] 65.16
B:5 [ARG] 0:2580 [G] 4.95 0:2555 [C] 65.16
B:5 [ARG] 0:2581 [U] 3.48 65.16
B:6 [PRO] 0:2548 [C] 4.87 0:2606 [G] 92.05
B:6 [PRO] 0:2580 [G] 3.44 0:2555 [C] 92.05
B:6 [PRO] 0:2581 [U] 3.85 92.05
B:6 [PRO] 0:2680 [A] 3.95 92.05
B:6 [PRO] 0:2712 [G] 4.25 0:2682 [C] 92.05
B:6 [PRO] 0:2713 [G] 3.81 0:2767 [C] 92.05
B:7 [ARG] 0:2548 [C] 3.44 0:2606 [G] 86.74
B:7 [ARG] 0:2549 [C] 3.08 0:2605 [G] 86.74
B:7 [ARG] 0:2580 [G] 4.97 0:2555 [C] 86.74
B:7 [ARG] 0:2713 [G] 4.1 0:2767 [C] 86.74
B:7 [ARG] 0:2714 [U] 3.51 0:2766 [A] 86.74
B:8 [LYS] 0:2547 [C] 3.61 0:2609 [G] 74.58
B:8 [LYS] 0:2548 [C] 2.98 0:2606 [G] 74.58
B:8 [LYS] 0:2714 [U] 3.97 0:2766 [A] 74.58
B:9 [GLY] 0:2681 [A] 4.05 96.03
B:9 [GLY] 0:2714 [U] 2.96 0:2766 [A] 96.03
B:9 [GLY] 0:2715 [G] 3.37 0:2765 [C] 96.03
B:10 [SER] 0:2679 [G] 4.2 0:2806 [C] 98.8
B:10 [SER] 0:2681 [A] 2.69 base:SC 98.8
B:10 [SER] 0:2714 [U] 3.14 0:2766 [A] 98.8
B:10 [SER] 0:2715 [G] 3.16 0:2765 [C] 98.8
B:11 [LEU] 0:2549 [C] 3.92 0:2605 [G] 72.25
B:11 [LEU] 0:2678 [A] 2.46 0:2807 [U] sugar:BB 72.25
B:11 [LEU] 0:2679 [G] 3.5 0:2806 [C] 72.25
B:11 [LEU] 0:2681 [A] 4.86 72.25
B:12 [GLY] 0:2678 [A] 3.32 0:2807 [U] 77.61
B:12 [GLY] 0:2679 [G] 3.62 0:2806 [C] 77.61
B:12 [GLY] 0:2681 [A] 4.97 77.61
B:12 [GLY] 0:2807 [U] 3.44 0:2678 [A] 77.61
B:12 [GLY] 0:2808 [U] 3.64 0:2677 [A] 77.61
B:13 [PHE] 0:2681 [A] 4.91 68.26
B:13 [PHE] 0:2714 [U] 3.64 0:2766 [A] 68.26
B:13 [PHE] 0:2715 [G] 3.6 0:2765 [C] 68.26
B:13 [PHE] 0:2807 [U] 3.6 0:2678 [A] 68.26
B:13 [PHE] 0:2808 [U] 3.54 0:2677 [A] 68.26
B:14 [GLY] 0:2808 [U] 3.25 0:2677 [A] 59.11
B:14 [GLY] 0:2809 [G] 3.51 0:2676 [C] 59.11
B:15 [PRO] 0:2656 [G] 3.57 0:2088 [C] 96.69
B:15 [PRO] 0:2808 [U] 4.66 0:2677 [A] 96.69
B:15 [PRO] 0:2809 [G] 3.6 0:2676 [C] 96.69
B:16 [ARG] 0:2656 [G] 2.76 0:2088 [C] 94.94
B:16 [ARG] 0:2714 [U] 4.66 0:2766 [A] 94.94
B:16 [ARG] 0:2715 [G] 3.04 0:2765 [C] 94.94
B:17 [LYS] 0:2656 [G] 3.59 0:2088 [C] 78.95
B:17 [LYS] 0:2657 [G] 3.08 0:2087 [C] 78.95
B:17 [LYS] 0:2809 [G] 3.72 0:2676 [C] 78.95
B:17 [LYS] 0:2810 [G] 2.69 0:2675 [A] 78.95
B:18 [ARG] 0:2656 [G] 4.33 0:2088 [C] 98.39
B:18 [ARG] 0:2657 [G] 2.76 0:2087 [C] 98.39
B:18 [ARG] 0:2658 [G] 3.73 0:2086 [C] 98.39
B:18 [ARG] 0:2839 [C] 3.4 98.39
B:18 [ARG] 0:2840 [A] 4.31 98.39
B:18 [ARG] 0:2842 [G] 2.95 base:SC, base:SC 98.39
B:18 [ARG] 0:2843 [A] 2.84 0:2838 [A] base:SC 98.39
B:19 [SER] 0:2809 [G] 4.51 0:2676 [C] 90.3
B:20 [THR] 0:2810 [G] 3.28 0:2675 [A] 47.86
B:22 [GLU] 0:2837 [U] 3.24 16.25
B:22 [GLU] 0:2845 [G] 4.16 0:2835 [C] 16.25
B:25 [ARG] 0:2671 [U] 2.69 0:2818 [A] 63.32
B:25 [ARG] 0:2672 [C] 2.88 0:2817 [G] 63.32
B:25 [ARG] 0:2808 [U] 4.94 0:2677 [A] 63.32
B:27 [ASN] 0:2806 [C] 4.49 0:2679 [G] 66.93
B:27 [ASN] 0:2807 [U] 2.61 0:2678 [A] 66.93
B:27 [ASN] 0:2808 [U] 3.29 0:2677 [A] 66.93
B:28 [SER] 0:2806 [C] 2.85 0:2679 [G] 73.92
B:28 [SER] 0:2807 [U] 2.88 0:2678 [A] 73.92
B:29 [TRP] 0:2806 [C] 4.97 0:2679 [G] 41.29
B:45 [LYS] 0:2717 [C] 2.92 0:2763 [G] 99.0
B:45 [LYS] 0:2718 [C] 2.93 0:2720 [C] 99.0
B:48 [MET] 0:2717 [C] 3.57 0:2763 [G] 98.62
B:48 [MET] 0:2718 [C] 3.7 0:2720 [C] 98.62
B:48 [MET] 0:2719 [A] 3.2 98.62
B:49 [THR] 0:2719 [A] 3.27 82.8
B:50 [HIS] 0:2719 [A] 2.58 sugar:SC 79.48
B:50 [HIS] 0:2720 [C] 4.54 0:2718 [C] 79.48
B:57 [GLU] 0:2708 [G] 3.26 0:2686 [C] 50.52
B:57 [GLU] 0:2709 [G] 4.5 0:2685 [C] 50.52
B:59 [ASN] 0:2707 [C] 3.38 0:2687 [G] 44.92
B:59 [ASN] 0:2708 [G] 3.43 0:2686 [C] 44.92
B:60 [SER] 0:2708 [G] 4.86 0:2686 [C] 88.65
B:61 [PRO] 0:2708 [G] 4.61 0:2686 [C] 66.79
B:70 [PRO] 0:2719 [A] 3.22 81.35
B:70 [PRO] 0:2764 [C] 3.48 0:2716 [G] 81.35
B:70 [PRO] 0:2765 [C] 4.86 0:2715 [G] 81.35
B:85 [ARG] 0:2670 [G] 3.3 0:2819 [C] base:SC 89.57
B:85 [ARG] 0:2671 [U] 2.69 0:2818 [A] base:SC, base:SC 89.57
B:85 [ARG] 0:2672 [C] 3.61 0:2817 [G] sugar:SC 89.57
B:85 [ARG] 0:2818 [A] 4.76 0:2671 [U] 89.57
B:85 [ARG] 0:2819 [C] 2.66 0:2670 [G] base:SC 89.57
B:87 [TYR] 0:2672 [C] 2.82 0:2817 [G] sugar:SC 89.54
B:87 [TYR] 0:2673 [U] 3.8 0:2811 [A] 89.54
B:92 [TYR] 0:2673 [U] 4.31 0:2811 [A] 35.6
B:92 [TYR] 0:2674 [G] 3.79 0:2813 [A] 35.6
B:92 [TYR] 0:2815 [G] 2.77 base:SC 35.6
B:93 [GLY] 0:2673 [U] 4.54 0:2811 [A] 77.83
B:93 [GLY] 0:2674 [G] 3.5 0:2813 [A] 77.83
B:94 [GLN] 0:2673 [U] 2.53 0:2811 [A] sugar:BB 42.5
B:94 [GLN] 0:2674 [G] 2.96 0:2813 [A] 42.5
B:95 [ARG] 0:2673 [U] 4.2 0:2811 [A] 54.2
B:95 [ARG] 0:2817 [G] 3.72 0:2672 [C] 54.2
B:95 [ARG] 0:2818 [A] 3.82 0:2671 [U] 54.2
B:96 [PRO] 0:2672 [C] 4.0 0:2817 [G] 52.6
B:96 [PRO] 0:2673 [U] 4.69 0:2811 [A] 52.6
B:96 [PRO] 0:2818 [A] 2.73 0:2671 [U] sugar:BB 52.6
B:96 [PRO] 0:2819 [C] 3.13 0:2670 [G] 52.6
B:97 [LEU] 0:2818 [A] 4.9 0:2671 [U] 21.63
B:97 [LEU] 0:2819 [C] 3.13 0:2670 [G] 21.63
B:97 [LEU] 0:2820 [A] 4.0 0:2669 [U] 21.63
B:98 [THR] 0:2819 [C] 3.74 0:2670 [G] 42.82
B:98 [THR] 0:2820 [A] 2.84 0:2669 [U] 42.82
B:99 [GLU] 0:2670 [G] 4.42 0:2819 [C] 75.45
B:99 [GLU] 0:2819 [C] 2.61 0:2670 [G] sugar:SC 75.45
B:99 [GLU] 0:2820 [A] 3.13 0:2669 [U] 75.45
B:101 [TRP] 0:2820 [A] 3.34 0:2669 [U] 9.0
B:111 [ARG] 0:2847 [G] 3.72 0:2833 [C] 79.3
B:111 [ARG] 0:2848 [G] 2.88 0:2832 [C] 79.3
B:112 [THR] 0:2669 [U] 2.48 0:2820 [A] sugar:BB 47.43
B:112 [THR] 0:2670 [G] 3.25 0:2819 [C] 47.43
B:113 [LEU] 0:2669 [U] 3.74 0:2820 [A] 55.97
B:113 [LEU] 0:2670 [G] 3.1 0:2819 [C] 55.97
B:114 [ASP] 0:2668 [G] 2.92 0:2821 [C] base:SC 44.88
B:114 [ASP] 0:2669 [U] 3.73 0:2820 [A] 44.88
B:114 [ASP] 0:2821 [C] 2.54 0:2668 [G] sugar:BB 44.88
B:114 [ASP] 0:2822 [C] 3.28 0:2667 [G] 44.88
B:114 [ASP] 0:2827 [A] 3.57 0:2913 [A] 44.88
B:114 [ASP] 0:2828 [G] 3.73 0:2912 [C] 44.88
B:115 [VAL] 0:2821 [C] 3.46 0:2668 [G] 36.83
B:115 [VAL] 0:2822 [C] 3.63 0:2667 [G] 36.83
B:116 [PRO] 0:2820 [A] 4.81 0:2669 [U] 58.83
B:116 [PRO] 0:2821 [C] 3.39 0:2668 [G] 58.83
B:116 [PRO] 0:2822 [C] 3.99 0:2667 [G] 58.83
B:117 [GLU] 0:2821 [C] 3.67 0:2668 [G] 55.36
B:117 [GLU] 0:2822 [C] 2.88 0:2667 [G] 55.36
B:117 [GLU] 0:2823 [G] 3.76 55.36
B:118 [ASP] 0:2821 [C] 3.86 0:2668 [G] 39.7
B:118 [ASP] 0:2822 [C] 2.93 0:2667 [G] 39.7
B:119 [HIS] 0:2820 [A] 3.83 0:2669 [U] 1.5
B:119 [HIS] 0:2821 [C] 2.97 0:2668 [G] 1.5
B:120 [ASP] 0:2821 [C] 4.66 0:2668 [G] 39.71
B:127 [GLN] 0:2820 [A] 4.88 0:2669 [U] 45.45
B:141 [ARG] 0:2672 [C] 3.36 0:2817 [G] 83.36
B:141 [ARG] 0:2673 [U] 3.06 0:2811 [A] 83.36
B:143 [ILE] 0:2671 [U] 3.51 0:2818 [A] 69.53
B:153 [SER] 0:2899 [A] 4.5 0:2858 [U] 53.93
B:154 [VAL] 0:2837 [U] 3.63 62.83
B:155 [PRO] 0:2837 [U] 4.08 48.83
B:155 [PRO] 0:2846 [C] 3.64 0:2834 [G] 48.83
B:155 [PRO] 0:2847 [G] 3.56 0:2833 [C] 48.83
B:155 [PRO] 0:2853 [U] 3.77 0:2905 [A] 48.83
B:156 [LYS] 0:2837 [U] 3.44 80.18
B:156 [LYS] 0:2846 [C] 3.26 0:2834 [G] 80.18
B:156 [LYS] 0:2847 [G] 3.4 0:2833 [C] 80.18
B:157 [LYS] 0:2846 [C] 4.16 0:2834 [G] 96.57
B:157 [LYS] 0:2847 [G] 2.68 0:2833 [C] 96.57
B:157 [LYS] 0:2848 [G] 2.96 0:2832 [C] 96.57
B:157 [LYS] 0:2851 [G] 2.58 0:2906 [A] 96.57
B:157 [LYS] 0:2852 [A] 3.06 96.57
B:158 [LYS] 0:2670 [G] 4.49 0:2819 [C] 61.78
B:158 [LYS] 0:2846 [C] 3.19 0:2834 [G] 61.78
B:158 [LYS] 0:2847 [G] 3.13 0:2833 [C] 61.78
B:160 [ASP] 0:2846 [C] 4.95 0:2834 [G] 67.68
B:161 [VAL] 0:2670 [G] 3.88 0:2819 [C] 69.61
B:161 [VAL] 0:2671 [U] 3.38 0:2818 [A] 69.61
B:161 [VAL] 0:2672 [C] 4.97 0:2817 [G] 69.61
B:162 [MET] 0:2671 [U] 4.01 0:2818 [A] 50.67
B:162 [MET] 0:2672 [C] 3.78 0:2817 [G] 50.67
B:163 [GLU] 0:2671 [U] 2.52 0:2818 [A] sugar:SC 99.0
B:163 [GLU] 0:2672 [C] 2.95 0:2817 [G] 99.0
B:206 [THR] 0:2716 [G] 3.27 0:2764 [C] 96.82
B:206 [THR] 0:2717 [C] 3.58 0:2763 [G] 96.82
B:206 [THR] 0:2838 [A] 4.13 0:2843 [A] 96.82
B:207 [LYS] 0:2716 [G] 4.68 0:2764 [C] 89.87
B:207 [LYS] 0:2717 [C] 2.92 0:2763 [G] 89.87
B:207 [LYS] 0:2718 [C] 3.04 0:2720 [C] 89.87
B:207 [LYS] 0:2758 [G] 4.82 0:2724 [U] 89.87
B:207 [LYS] 0:2759 [C] 2.61 0:2723 [G] 89.87
B:207 [LYS] 0:2838 [A] 3.61 0:2843 [A] 89.87
B:208 [GLY] 0:2838 [A] 2.84 0:2843 [A] 98.77
B:208 [GLY] 0:2839 [C] 3.28 98.77
B:209 [LYS] 0:1732 [A] 4.22 88.32
B:209 [LYS] 0:2717 [C] 4.52 0:2763 [G] 88.32
B:209 [LYS] 0:2759 [C] 3.92 0:2723 [G] 88.32
B:209 [LYS] 0:2760 [C] 2.76 0:2722 [G] 88.32
B:209 [LYS] 0:2839 [C] 3.45 88.32
B:210 [GLY] 0:1732 [A] 4.84 98.8
B:210 [GLY] 0:2839 [C] 2.9 98.8
B:210 [GLY] 0:2840 [A] 3.63 98.8
B:211 [THR] 0:1732 [A] 2.58 base:SC, sugar:BB 69.96
B:211 [THR] 0:1733 [A] 3.43 0:2046 [G] sugar:SC 69.96
B:211 [THR] 0:2839 [C] 4.85 69.96
B:211 [THR] 0:2840 [A] 2.65 69.96
B:212 [GLN] 0:1732 [A] 3.48 82.74
B:212 [GLN] 0:1733 [A] 3.68 0:2046 [G] 82.74
B:213 [GLY] 0:1733 [A] 3.23 0:2046 [G] 98.42
B:213 [GLY] 0:1734 [C] 3.9 0:2045 [G] 98.42
B:214 [PRO] 0:1734 [C] 4.87 0:2045 [G] 52.17
B:215 [VAL] 0:2038 [A] 4.31 0:1741 [U] 88.65
B:215 [VAL] 0:2039 [A] 3.86 0:1740 [U] 88.65
B:216 [LYS] 0:2039 [A] 4.84 0:1740 [U] 90.43
B:216 [LYS] 0:2040 [C] 4.92 0:1739 [G] 90.43
B:216 [LYS] 0:2759 [C] 4.64 0:2723 [G] 90.43
B:216 [LYS] 0:2760 [C] 2.78 0:2722 [G] 90.43
B:217 [ARG] 0:2655 [U] 2.82 0:2089 [A] sugar:SC 98.97
B:217 [ARG] 0:2656 [G] 2.98 0:2088 [C] 98.97
B:218 [TRP] 0:2656 [G] 4.67 0:2088 [C] 65.16
B:218 [TRP] 0:2714 [U] 4.99 0:2766 [A] 65.16
B:220 [VAL] 0:2038 [A] 4.6 0:1741 [U] 77.36
B:220 [VAL] 0:2547 [C] 3.56 0:2609 [G] 77.36
B:221 [GLN] 0:2036 [C] 4.4 0:1743 [G] 69.15
B:221 [GLN] 0:2038 [A] 3.66 0:1741 [U] 69.15
B:221 [GLN] 0:2546 [U] 3.43 0:2610 [U] 69.15
B:221 [GLN] 0:2547 [C] 3.09 0:2609 [G] 69.15
B:222 [LYS] 0:2038 [A] 3.03 0:1741 [U] 61.87
B:222 [LYS] 0:2039 [A] 3.61 0:1740 [U] 61.87
B:223 [ARG] 0:2035 [C] 4.28 0:1744 [G] 68.16
B:223 [ARG] 0:2613 [G] 3.43 0:2545 [U] sugar:SC 68.16
B:223 [ARG] 0:2614 [C] 3.08 0:2544 [G] sugar:SC 68.16
B:224 [LYS] 0:2034 [U] 4.6 0:1747 [A] 50.91
B:224 [LYS] 0:2035 [C] 3.26 0:1744 [G] 50.91
B:224 [LYS] 0:2036 [C] 2.94 0:1743 [G] 50.91
B:224 [LYS] 0:2037 [C] 3.38 0:1742 [A] 50.91
B:224 [LYS] 0:2038 [A] 2.72 0:1741 [U] 50.91
B:225 [GLY] 0:2034 [U] 3.33 0:1747 [A] 44.64
B:225 [GLY] 0:2035 [C] 2.84 0:1744 [G] 44.64
B:226 [LYS] 0:835 [U] 3.67 64.29
B:226 [LYS] 0:1750 [C] 3.95 64.29
B:226 [LYS] 0:1751 [G] 2.59 base:SC 64.29
B:226 [LYS] 0:1753 [C] 3.73 64.29
B:226 [LYS] 0:2615 [U] 3.45 0:2543 [G] 64.29
B:226 [LYS] 0:2616 [G] 2.94 64.29
B:227 [HIS] 0:2544 [G] 3.62 0:2614 [C] 82.3
B:227 [HIS] 0:2545 [U] 4.1 0:2613 [G] 82.3
B:227 [HIS] 0:2614 [C] 2.67 0:2544 [G] sugar:SC 82.3
B:227 [HIS] 0:2615 [U] 3.11 0:2543 [G] 82.3
B:228 [ALA] 0:1736 [A] 4.95 0:2043 [U] 94.18
B:229 [ARG] 0:834 [G] 4.27 0:848 [C] 78.1
B:229 [ARG] 0:835 [U] 2.77 78.1
B:229 [ARG] 0:836 [G] 3.56 0:847 [C] 78.1
B:229 [ARG] 0:837 [U] 4.27 0:846 [A] 78.1
B:229 [ARG] 0:1736 [A] 4.48 0:2043 [U] 78.1
B:229 [ARG] 0:1753 [C] 2.44 base:SC 78.1
B:229 [ARG] 0:1754 [A] 3.17 78.1
B:230 [GLN] 0:834 [G] 4.8 0:848 [C] 75.44
B:230 [GLN] 0:835 [U] 2.66 75.44
B:230 [GLN] 0:836 [G] 3.27 0:847 [C] 75.44
B:230 [GLN] 0:837 [U] 3.51 0:846 [A] 75.44
B:230 [GLN] 0:1736 [A] 4.69 0:2043 [U] 75.44
B:230 [GLN] 0:2614 [C] 3.56 0:2544 [G] 75.44
B:230 [GLN] 0:2615 [U] 3.14 0:2543 [G] 75.44
B:230 [GLN] 0:2616 [G] 4.94 75.44
B:231 [GLY] 0:837 [U] 4.12 0:846 [A] 81.83
B:231 [GLY] 0:1735 [C] 3.11 0:2044 [G] 81.83
B:231 [GLY] 0:1736 [A] 3.47 0:2043 [U] 81.83
B:232 [TRP] 0:1735 [C] 3.69 0:2044 [G] 47.15
B:232 [TRP] 0:1736 [A] 4.68 0:2043 [U] 47.15
B:232 [TRP] 0:2092 [G] 2.85 47.15
B:232 [TRP] 0:2613 [G] 3.59 0:2545 [U] 47.15
B:232 [TRP] 0:2614 [C] 3.34 0:2544 [G] 47.15
B:233 [ARG] 0:1735 [C] 2.61 0:2044 [G] 68.23
B:233 [ARG] 0:1736 [A] 2.72 0:2043 [U] 68.23
B:233 [ARG] 0:1737 [A] 4.53 0:2042 [U] 68.23
B:234 [ARG] 0:1733 [A] 4.95 0:2046 [G] 98.57
B:234 [ARG] 0:1734 [C] 2.71 0:2045 [G] 98.57
B:234 [ARG] 0:1735 [C] 2.57 0:2044 [G] 98.57
B:234 [ARG] 0:2038 [A] 4.42 0:1741 [U] 98.57
B:234 [ARG] 0:2039 [A] 2.75 0:1740 [U] 98.57
B:235 [ARG] 0:1734 [C] 2.76 0:2045 [G] sugar:SC, sugar:SC 48.08
B:235 [ARG] 0:1735 [C] 3.68 0:2044 [G] 48.08
B:235 [ARG] 0:2091 [G] 3.26 0:2653 [A] 48.08
B:235 [ARG] 0:2092 [G] 3.14 48.08
B:235 [ARG] 0:2546 [U] 4.98 0:2610 [U] 48.08
B:236 [ILE] 0:2091 [G] 4.92 0:2653 [A] 66.68
B:236 [ILE] 0:2546 [U] 3.68 0:2610 [U] 66.68
B:236 [ILE] 0:2547 [C] 4.21 0:2609 [G] 66.68
B:237 [GLY] 0:2093 [G] 4.52 0:2652 [U] 85.55
B:237 [GLY] 0:2546 [U] 2.63 0:2610 [U] sugar:BB 85.55
B:237 [GLY] 0:2547 [C] 4.22 0:2609 [G] 85.55
B:237 [GLY] 0:2613 [G] 2.78 0:2545 [U] 85.55
B:238 [ASN] 0:2093 [G] 3.28 0:2652 [U] 79.04
B:238 [ASN] 0:2546 [U] 3.09 0:2610 [U] base:SC 79.04
B:238 [ASN] 0:2547 [C] 2.99 0:2609 [G] base:SC, sugar:BB 79.04
B:238 [ASN] 0:2609 [G] 3.16 0:2547 [C] base:SC 79.04
B:238 [ASN] 0:2610 [U] 3.22 0:2546 [U] 79.04
B:238 [ASN] 0:2613 [G] 4.15 0:2545 [U] 79.04
B:239 [LEU] 0:2091 [G] 3.5 0:2653 [A] 67.48
B:239 [LEU] 0:2092 [G] 3.69 67.48
B:239 [LEU] 0:2093 [G] 2.87 0:2652 [U] 67.48
B:239 [LEU] 0:2653 [A] 4.9 0:2091 [G] 67.48
B:240 [GLY] 0:2093 [G] 3.27 0:2652 [U] 90.33
B:240 [GLY] 0:2547 [C] 4.9 0:2609 [G] 90.33
B:240 [GLY] 0:2548 [C] 4.87 0:2606 [G] 90.33
B:240 [GLY] 0:2609 [G] 3.83 0:2547 [C] 90.33
B:240 [GLY] 0:2610 [U] 4.55 0:2546 [U] 90.33
B:241 [PRO] 0:2093 [G] 2.8 0:2652 [U] sugar:BB 70.64
B:241 [PRO] 0:2094 [G] 4.95 0:2651 [C] 70.64
B:241 [PRO] 0:2548 [C] 3.68 0:2606 [G] 70.64
B:241 [PRO] 0:2606 [G] 3.33 0:2548 [C] 70.64
B:241 [PRO] 0:2607 [U] 4.34 70.64
B:241 [PRO] 0:2609 [G] 3.35 0:2547 [C] 70.64
B:241 [PRO] 0:2610 [U] 4.35 0:2546 [U] 70.64
B:242 [TRP] 0:2093 [G] 3.46 0:2652 [U] 38.25
B:242 [TRP] 0:2094 [G] 3.26 0:2651 [C] 38.25
B:242 [TRP] 0:2095 [A] 4.03 0:2650 [U] 38.25
B:242 [TRP] 0:2096 [A] 3.47 38.25
B:242 [TRP] 0:2539 [U] 4.22 38.25
B:242 [TRP] 0:2607 [U] 3.17 base/AA stacks 38.25
B:242 [TRP] 0:2609 [G] 2.76 0:2547 [C] sugar:BB 38.25
B:242 [TRP] 0:2610 [U] 3.64 0:2546 [U] 38.25
B:243 [ASN] 0:1234 [U] 4.66 54.7
B:243 [ASN] 0:2073 [G] 3.8 54.7
B:243 [ASN] 0:2093 [G] 4.87 0:2652 [U] 54.7
B:243 [ASN] 0:2606 [G] 2.49 0:2548 [C] sugar:BB 54.7
B:243 [ASN] 0:2607 [U] 2.92 54.7
B:243 [ASN] 0:2609 [G] 4.4 0:2547 [C] 54.7
B:244 [PRO] 0:1234 [U] 3.23 86.85
B:244 [PRO] 0:2066 [C] 3.75 0:2079 [G] 86.85
B:244 [PRO] 0:2093 [G] 3.53 0:2652 [U] sugar:BB 86.85
B:244 [PRO] 0:2606 [G] 4.3 0:2548 [C] 86.85
B:245 [SER] 0:1234 [U] 4.9 55.07
B:245 [SER] 0:2065 [C] 4.18 0:2080 [G] 55.07
B:245 [SER] 0:2093 [G] 2.8 0:2652 [U] base:BB 55.07
B:245 [SER] 0:2094 [G] 3.32 0:2651 [C] 55.07
B:246 [ARG] 0:1234 [U] 2.87 base:SC 64.94
B:246 [ARG] 0:2065 [C] 3.19 0:2080 [G] 64.94
B:246 [ARG] 0:2066 [C] 3.02 0:2079 [G] 64.94
B:246 [ARG] 0:2093 [G] 3.33 0:2652 [U] 64.94
B:246 [ARG] 0:2094 [G] 4.72 0:2651 [C] 64.94
B:246 [ARG] 0:2653 [A] 3.36 0:2091 [G] 64.94
B:247 [VAL] 0:2091 [G] 4.32 0:2653 [A] 85.0
B:247 [VAL] 0:2093 [G] 3.4 0:2652 [U] 85.0
B:247 [VAL] 0:2653 [A] 3.1 0:2091 [G] sugar:BB 85.0
B:247 [VAL] 0:2654 [C] 3.03 0:2090 [G] sugar:BB 85.0
B:248 [ARG] 0:1234 [U] 3.61 sugar:SC 46.57
B:248 [ARG] 0:2548 [C] 3.76 0:2606 [G] sugar:SC 46.57
B:248 [ARG] 0:2549 [C] 3.27 0:2605 [G] 46.57
B:248 [ARG] 0:2606 [G] 3.75 0:2548 [C] 46.57
B:248 [ARG] 0:2654 [C] 3.59 0:2090 [G] 46.57
B:249 [SER] 0:2654 [C] 3.32 0:2090 [G] 39.03
B:249 [SER] 0:2655 [U] 3.09 0:2089 [A] 39.03
B:250 [THR] 0:2548 [C] 3.03 0:2606 [G] sugar:SC 82.34
B:250 [THR] 0:2549 [C] 3.63 0:2605 [G] 82.34
B:251 [VAL] 0:2547 [C] 4.05 0:2609 [G] 81.89
B:251 [VAL] 0:2548 [C] 3.85 0:2606 [G] 81.89
B:252 [PRO] 0:2547 [C] 3.53 0:2609 [G] 83.69
B:252 [PRO] 0:2548 [C] 3.56 0:2606 [G] 83.69
B:253 [GLN] 0:2090 [G] 3.04 0:2654 [C] base:SC 72.55
B:253 [GLN] 0:2091 [G] 2.88 0:2653 [A] base:SC 72.55
B:253 [GLN] 0:2654 [C] 3.07 0:2090 [G] sugar:SC 72.55
B:253 [GLN] 0:2655 [U] 3.21 0:2089 [A] 72.55
B:254 [GLN] 0:1733 [A] 3.46 0:2046 [G] 76.86
B:254 [GLN] 0:2089 [A] 4.03 0:2655 [U] 76.86
B:254 [GLN] 0:2090 [G] 3.37 0:2654 [C] sugar:SC 76.86
B:254 [GLN] 0:2655 [U] 2.55 0:2089 [A] sugar:BB 76.86
B:254 [GLN] 0:2656 [G] 4.39 0:2088 [C] 76.86
B:255 [GLY] 0:2655 [U] 4.54 0:2089 [A] 98.92
B:255 [GLY] 0:2656 [G] 3.86 0:2088 [C] 98.92
B:256 [GLN] 0:2656 [G] 3.0 0:2088 [C] sugar:BB 93.8
B:256 [GLN] 0:2657 [G] 3.88 0:2087 [C] 93.8
B:256 [GLN] 0:2838 [A] 4.99 0:2843 [A] 93.8
B:256 [GLN] 0:2839 [C] 3.2 93.8
B:257 [THR] 0:2839 [C] 4.5 72.05
B:259 [TYR] 0:2838 [A] 3.53 0:2843 [A] 62.39
B:259 [TYR] 0:2839 [C] 4.36 62.39
B:259 [TYR] 0:2844 [C] 3.85 0:2836 [G] 62.39
B:260 [HIS] 0:2716 [G] 4.02 0:2764 [C] 80.58
B:261 [GLN] 0:2808 [U] 2.92 0:2677 [A] 61.13
B:261 [GLN] 0:2809 [G] 3.76 0:2676 [C] 61.13
B:262 [ARG] 0:2715 [G] 2.95 0:2765 [C] sugar:SC 96.21
B:262 [ARG] 0:2716 [G] 3.32 0:2764 [C] 96.21
B:262 [ARG] 0:2807 [U] 4.87 0:2678 [A] 96.21
B:262 [ARG] 0:2808 [U] 3.77 0:2677 [A] 96.21
B:263 [THR] 0:2807 [U] 3.47 0:2678 [A] 90.25
B:263 [THR] 0:2808 [U] 2.76 0:2677 [A] 90.25
B:264 [GLU] 0:2715 [G] 2.75 0:2765 [C] base:SC 82.05
B:264 [GLU] 0:2716 [G] 3.91 0:2764 [C] sugar:SC 82.05
B:264 [GLU] 0:2765 [C] 3.42 0:2715 [G] 82.05
B:264 [GLU] 0:2766 [A] 4.33 0:2714 [U] 82.05
B:265 [LEU] 0:2766 [A] 2.83 0:2714 [U] sugar:BB 50.4
B:265 [LEU] 0:2767 [C] 4.22 0:2713 [G] 50.4
B:265 [LEU] 0:2806 [C] 4.26 0:2679 [G] 50.4
B:265 [LEU] 0:2807 [U] 4.51 0:2678 [A] 50.4
B:266 [ASN] 0:2766 [A] 3.63 0:2714 [U] 96.97
B:266 [ASN] 0:2767 [C] 2.68 0:2713 [G] 96.97
B:267 [LYS] 0:2715 [G] 4.96 0:2765 [C] 87.97
B:267 [LYS] 0:2765 [C] 2.87 0:2715 [G] sugar:SC 87.97
B:267 [LYS] 0:2766 [A] 3.31 0:2714 [U] sugar:SC 87.97
B:281 [ASP] 0:2861 [G] 3.57 0:2895 [C] 50.2
B:282 [GLY] 0:2860 [G] 2.95 0:2897 [C] base:BB 67.72
B:282 [GLY] 0:2861 [G] 3.12 0:2895 [C] 67.72
B:282 [GLY] 0:2897 [C] 4.14 0:2860 [G] 67.72
B:282 [GLY] 0:2898 [G] 3.14 0:2859 [C] 67.72
B:283 [GLY] 0:2897 [C] 4.87 0:2860 [G] 93.02
B:283 [GLY] 0:2898 [G] 4.06 0:2859 [C] 93.02
B:284 [PHE] 0:2897 [C] 3.89 0:2860 [G] 73.31
B:284 [PHE] 0:2898 [G] 3.9 0:2859 [C] 73.31
B:285 [VAL] 0:2757 [A] 3.2 0:2725 [G] 2.21
B:285 [VAL] 0:2758 [G] 3.6 0:2724 [U] 2.21
B:285 [VAL] 0:2897 [C] 3.35 0:2860 [G] 2.21
B:285 [VAL] 0:2898 [G] 4.94 0:2859 [C] 2.21
B:286 [ASN] 0:2757 [A] 3.9 0:2725 [G] sugar:SC 65.67
B:286 [ASN] 0:2758 [G] 3.95 0:2724 [U] 65.67
B:286 [ASN] 0:2897 [C] 3.07 0:2860 [G] sugar:BB 65.67
B:286 [ASN] 0:2898 [G] 3.67 0:2859 [C] 65.67
B:287 [TYR] 0:2897 [C] 4.74 0:2860 [G] 92.79
B:287 [TYR] 0:2898 [G] 3.85 0:2859 [C] 92.79
B:287 [TYR] 0:2899 [A] 4.16 0:2858 [U] 92.79
B:288 [GLY] 0:2898 [G] 3.12 0:2859 [C] 97.93
B:288 [GLY] 0:2899 [A] 3.88 0:2858 [U] 97.93
B:289 [GLU] 0:2898 [G] 3.5 0:2859 [C] 1.98
B:289 [GLU] 0:2899 [A] 3.74 0:2858 [U] 1.98
B:298 [LYS] 0:2765 [C] 3.88 0:2715 [G] 63.67
B:298 [LYS] 0:2766 [A] 3.34 0:2714 [U] 63.67
B:299 [GLY] 0:2765 [C] 3.86 0:2715 [G] 98.8
B:300 [SER] 0:2716 [G] 2.75 0:2764 [C] base:SC 95.02
B:300 [SER] 0:2717 [C] 3.43 0:2763 [G] 95.02
B:300 [SER] 0:2764 [C] 4.61 0:2716 [G] 95.02
B:300 [SER] 0:2765 [C] 3.43 0:2715 [G] sugar:BB 95.02
B:301 [VAL] 0:2716 [G] 4.18 0:2764 [C] 83.22
B:301 [VAL] 0:2717 [C] 3.14 0:2763 [G] 83.22
B:302 [PRO] 0:2716 [G] 3.6 0:2764 [C] 81.67
B:302 [PRO] 0:2717 [C] 3.76 0:2763 [G] 81.67
B:303 [GLY] 0:2716 [G] 4.31 0:2764 [C] 98.92
B:303 [GLY] 0:2717 [C] 2.93 0:2763 [G] 98.92
B:303 [GLY] 0:2718 [C] 3.9 0:2720 [C] 98.92
B:304 [PRO] 0:2717 [C] 4.84 0:2763 [G] 71.36
B:304 [PRO] 0:2718 [C] 4.61 0:2720 [C] 71.36
B:304 [PRO] 0:2837 [U] 3.71 71.36
B:304 [PRO] 0:2838 [A] 4.12 0:2843 [A] 71.36
B:305 [ASP] 0:2718 [C] 4.13 0:2720 [C] 36.85
B:305 [ASP] 0:2837 [U] 3.8 36.85
B:306 [LYS] 0:2837 [U] 3.28 88.22
B:307 [ARG] 0:2837 [U] 2.9 base:SC 94.18
B:307 [ARG] 0:2838 [A] 2.59 0:2843 [A] 94.18
B:308 [LEU] 0:2837 [U] 4.85 65.16
B:310 [ARG] 0:2672 [C] 4.55 0:2817 [G] 49.71
B:312 [ARG] 0:2806 [C] 4.59 0:2679 [G] 85.01
B:312 [ARG] 0:2807 [U] 2.6 0:2678 [A] 85.01
B:315 [VAL] 0:2806 [C] 4.16 0:2679 [G] 56.14
B:315 [VAL] 0:2807 [U] 4.94 0:2678 [A] 56.14
B:316 [ARG] 0:2681 [A] 4.92 87.18
B:316 [ARG] 0:2682 [C] 2.61 0:2712 [G] 87.18
B:316 [ARG] 0:2767 [C] 3.39 0:2713 [G] 87.18
B:316 [ARG] 0:2768 [A] 3.24 sugar:SC base/AA stacks 87.18
B:316 [ARG] 0:2806 [C] 3.64 0:2679 [G] sugar:SC 87.18
B:318 [ASN] 0:2767 [C] 2.58 0:2713 [G] 11.94
B:318 [ASN] 0:2768 [A] 3.29 sugar:SC 11.94
B:331 [SER] 0:2719 [A] 4.84 64.76
B:333 [GLU] 0:2720 [C] 4.48 0:2718 [C] 1.09
B:334 [SER] 0:2861 [G] 2.57 0:2895 [C] sugar:SC 76.65
B:334 [SER] 0:2862 [G] 3.48 0:2894 [C] 76.65
B:335 [ASN] 0:2719 [A] 3.39 47.55
B:335 [ASN] 0:2757 [A] 3.22 0:2725 [G] 47.55
B:336 [GLN] 0:2756 [U] 4.08 0:2896 [A] 72.04
B:336 [GLN] 0:2757 [A] 3.88 0:2725 [G] 72.04
B:336 [GLN] 0:2860 [G] 3.84 0:2897 [C] 72.04
B:336 [GLN] 0:2861 [G] 2.84 0:2895 [C] base:SC 72.04
B:336 [GLN] 0:2862 [G] 3.37 0:2894 [C] 72.04
B:336 [GLN] 0:2897 [C] 2.87 0:2860 [G] base:SC 72.04
B:337 [GLY] 0:2756 [U] 3.16 0:2896 [A] 63.44
B:337 [GLY] 0:2757 [A] 3.58 0:2725 [G] 63.44
B:337 [GLY] 0:2862 [G] 3.67 0:2894 [C] 63.44
B:337 [GLY] 0:2863 [G] 4.11 0:2893 [C] 63.44

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group129 1VQ8_B_0 B: 50s ribosomal protein l3p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P20279 Alanine racemase-C Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_B_0 7O7Y_BB_B5 0.74 0.94 1.87 0.43 Alanine racemase-C compare
1VQ8_B_0 7K00_d_a 0.63 0.91 2.21 0.29 Alanine racemase-C compare
1VQ8_B_0 6S0Z_D_A 0.62 0.89 2.6 0.28 Alanine racemase-C compare
1VQ8_B_0 1YHQ_B_0 0.99 1.0 0.18 1.0 Alanine racemase-C Archaeal large subunit ribosomal RNA compare
1VQ8_B_0 7RYG_D_A 0.64 0.92 2.83 0.29 Alanine racemase-C compare
1VQ8_B_0 6AZ3_B_5 0.88 0.81 1.06 0.19 Alanine racemase-C compare
1VQ8_B_0 4Y4O_1E_1A 0.64 0.9 2.32 0.29 Alanine racemase-C compare
1VQ8_B_0 6AZ3_B_4 0.78 0.82 1.48 0.26 Alanine racemase-C compare
1VQ8_B_0 6AZ3_B_1 0.58 0.77 1.75 0.33 Alanine racemase-C compare