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All interfaces > All interologs > Interface groups > group129 > 1VQ8_B_0 vs 6AZ3_B_1

Interface analysis


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Common contacts -

1VQ8_B
1VQ8_0
6AZ3_B
6AZ3_1
Conserved?
B:243 [ASN] 0:1234 [U] B:261 [HIS] 1:1367 [U] ✔
B:246 [ARG] 0:1234 [U] B:264 [ARG] 1:1367 [U] ✔
B:226 [LYS] 0:835 [U] B:246 [LYS] 1:925 [U] ✔
B:230 [GLN] 0:837 [U] B:248 [HIS] 1:927 [A2M] ✔
B:245 [SER] 0:1234 [U] B:263 [ALA] 1:1367 [U] ✔
B:244 [PRO] 0:1234 [U] B:262 [PRO] 1:1367 [U] ✔
B:230 [GLN] 0:834 [G] B:248 [HIS] 1:924 [C] ❌ 6AZ3_B_1
B:230 [GLN] 0:835 [U] B:248 [HIS] 1:925 [U] ❌ 6AZ3_B_1
B:225 [GLY] 0:834 [G] B:245 [ARG] 1:924 [C] ❌ 1VQ8_B_0
B:225 [GLY] 0:835 [U] B:245 [ARG] 1:925 [U] ❌ 1VQ8_B_0
B:230 [GLN] 0:836 [G] B:248 [HIS] 1:926 [G] ❌ 6AZ3_1:926 no longer at interface
B:230 [GLN] 0:839 [C] B:248 [HIS] 1:929 [G] ❌ 1VQ8_0:839 no longer at interface
B:246 [ARG] 0:1235 [G] B:264 [ARG] 1:1368 [G] ❌ 1VQ8_0:1235 no longer at interface
B:231 [GLY] 0:837 [U] B:249 [ARG] 1:927 [A2M] ❌ 6AZ3_B:249 no longer at interface
B:248 [ARG] 0:1234 [U] B:266 [MET] 1:1367 [U] ❌ 6AZ3_B:266 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Alanine racemase-C 0.77 1.75 0.33 0.92 0.76 1.0 0.67 0.58 0.68 0.12 0.56


Other pairs involving 1VQ8_B_0 or 6AZ3_B_1

Total number of entries: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_B_0 6AZ3_B_1 0.59 0.77 1.82 0.33 Alanine racemase-C compare
6AZ3_B_1 6S0Z_D_A 0.76 0.67 1.81 0.29 Alanine racemase-C compare
6AZ3_B_1 7RYG_D_A 0.73 0.65 1.88 0.29 Alanine racemase-C compare
6AZ3_B_1 7K00_d_a 0.61 0.66 1.8 0.14 Alanine racemase-C compare
1VQ8_B_0 7O7Y_BB_B5 0.74 0.94 1.87 0.43 Alanine racemase-C compare
1VQ8_B_0 7K00_d_a 0.63 0.91 2.21 0.29 Alanine racemase-C compare
1VQ8_B_0 6S0Z_D_A 0.62 0.89 2.6 0.28 Alanine racemase-C compare
1VQ8_B_0 1YHQ_B_0 0.99 1.0 0.18 1.0 Alanine racemase-C Archaeal large subunit ribosomal RNA compare
1VQ8_B_0 7RYG_D_A 0.64 0.92 2.83 0.29 Alanine racemase-C compare
1VQ8_B_0 6AZ3_B_5 0.88 0.81 1.06 0.19 Alanine racemase-C compare
1VQ8_B_0 4Y4O_1E_1A 0.64 0.9 2.32 0.29 Alanine racemase-C compare
1VQ8_B_0 6AZ3_B_4 0.78 0.82 1.48 0.26 Alanine racemase-C compare
1VQ8_B_0 6AZ3_B_1 0.58 0.77 1.75 0.33 Alanine racemase-C compare
4Y4O_1E_1A 6AZ3_B_1 0.61 0.66 1.78 0.17 Alanine racemase-C compare