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All interfaces > All interologs > Interface groups > group129 > 1YHQ_B_0 vs 6AZ3_B_5

Interface analysis


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Common contacts -

1YHQ_B
1YHQ_0
6AZ3_B
6AZ3_5
Conserved?
B:154 [VAL] 0:2837 [U] B:176 [VAL] 5:13 [C] ✔
B:286 [ASN] 0:2897 [C] B:320 [GLY] 5:107 [G] ✔
B:286 [ASN] 0:2898 [G] B:320 [GLY] 5:108 [C] ✔
B:281 [ASP] 0:2861 [G] B:315 [MET] 5:36 [U] ✔
B:209 [LYS] 0:2839 [C] B:229 [HIS] 5:15 [A] ✔
B:285 [VAL] 0:2897 [C] B:319 [VAL] 5:107 [G] ✔
B:287 [TYR] 0:2897 [C] B:321 [TYR] 5:107 [G] ✔
B:287 [TYR] 0:2898 [G] B:321 [TYR] 5:108 [C] ✔
B:287 [TYR] 0:2899 [A] B:321 [TYR] 5:109 [C] ✔
B:18 [ARG] 0:2839 [C] B:21 [ARG] 5:15 [A] ✔
B:18 [ARG] 0:2840 [A] B:21 [ARG] 5:16 [A] ✔
B:18 [ARG] 0:2842 [G] B:21 [ARG] 5:18 [G] ✔
B:18 [ARG] 0:2843 [A] B:21 [ARG] 5:19 [A] ✔
B:111 [ARG] 0:2847 [G] B:116 [ARG] 5:23 [A] ✔
B:111 [ARG] 0:2848 [G] B:116 [ARG] 5:24 [A] ✔
B:208 [GLY] 0:2838 [A] B:228 [GLY] 5:14 [A] ✔
B:208 [GLY] 0:2839 [C] B:228 [GLY] 5:15 [A] ✔
B:210 [GLY] 0:2839 [C] B:230 [GLY] 5:15 [A] ✔
B:210 [GLY] 0:2840 [A] B:230 [GLY] 5:16 [A] ✔
B:283 [GLY] 0:2898 [G] B:317 [GLY] 5:108 [C] ✔
B:307 [ARG] 0:2837 [U] B:341 [ARG] 5:13 [C] ✔
B:307 [ARG] 0:2838 [A] B:341 [ARG] 5:14 [A] ✔
B:288 [GLY] 0:2898 [G] B:322 [GLY] 5:108 [C] ✔
B:288 [GLY] 0:2899 [A] B:322 [GLY] 5:109 [C] ✔
B:207 [LYS] 0:2838 [A] B:227 [LYS] 5:14 [A] ✔
B:282 [GLY] 0:2860 [G] B:316 [GLY] 5:35 [C] ✔
B:282 [GLY] 0:2861 [G] B:316 [GLY] 5:36 [U] ✔
B:282 [GLY] 0:2897 [C] B:316 [GLY] 5:107 [G] ✔
B:282 [GLY] 0:2898 [G] B:316 [GLY] 5:108 [C] ✔
B:211 [THR] 0:2839 [C] B:231 [THR] 5:15 [A] ✔
B:211 [THR] 0:2840 [A] B:231 [THR] 5:16 [A] ✔
B:336 [GLN] 0:2861 [G] B:372 [ILE] 5:36 [U] ✔
B:336 [GLN] 0:2862 [G] B:372 [ILE] 5:37 [G] ✔
B:336 [GLN] 0:2897 [C] B:372 [ILE] 5:107 [G] ✔
B:284 [PHE] 0:2897 [C] B:318 [PHE] 5:107 [G] ✔
B:284 [PHE] 0:2898 [G] B:318 [PHE] 5:108 [C] ✔
B:155 [PRO] 0:2837 [U] B:177 [GLY] 5:13 [C] ✔
B:155 [PRO] 0:2846 [C] B:177 [GLY] 5:22 [G] ✔
B:155 [PRO] 0:2847 [G] B:177 [GLY] 5:23 [A] ✔
B:22 [GLU] 0:2837 [U] B:25 [ILE] 5:13 [C] ✔
B:22 [GLU] 0:2845 [G] B:25 [ILE] 5:21 [A] ✔
B:206 [THR] 0:2838 [A] B:226 [THR] 5:14 [A] ✔
B:305 [ASP] 0:2837 [U] B:339 [ARG] 5:13 [C] ✔
B:259 [TYR] 0:2838 [A] B:277 [TYR] 5:14 [A] ✔
B:259 [TYR] 0:2839 [C] B:277 [TYR] 5:15 [A] ✔
B:259 [TYR] 0:2844 [C] B:277 [TYR] 5:20 [G] ✔
B:157 [LYS] 0:2846 [C] B:179 [LYS] 5:22 [G] ✔
B:157 [LYS] 0:2847 [G] B:179 [LYS] 5:23 [A] ✔
B:157 [LYS] 0:2848 [G] B:179 [LYS] 5:24 [A] ✔
B:157 [LYS] 0:2851 [G] B:179 [LYS] 5:26 [A] ✔
B:306 [LYS] 0:2837 [U] B:340 [ARG] 5:13 [C] ✔
B:160 [ASP] 0:2846 [C] B:182 [HIS] 5:22 [G] ✔
B:334 [SER] 0:2861 [G] B:370 [SER] 5:36 [U] ✔
B:334 [SER] 0:2862 [G] B:370 [SER] 5:37 [G] ✔
B:158 [LYS] 0:2846 [C] B:180 [LYS] 5:22 [G] ✔
B:158 [LYS] 0:2847 [G] B:180 [LYS] 5:23 [A] ✔
B:156 [LYS] 0:2837 [U] B:178 [VAL] 5:13 [C] ✔
B:156 [LYS] 0:2846 [C] B:178 [VAL] 5:22 [G] ✔
B:156 [LYS] 0:2847 [G] B:178 [VAL] 5:23 [A] ✔
B:257 [THR] 0:2839 [C] B:275 [HIS] 5:15 [A] ✔
B:256 [GLN] 0:2838 [A] B:274 [GLN] 5:14 [A] ✔
B:256 [GLN] 0:2839 [C] B:274 [GLN] 5:15 [A] ✔
B:289 [GLU] 0:2898 [G] B:323 [THR] 5:108 [C] ✔
B:289 [GLU] 0:2899 [A] B:323 [THR] 5:109 [C] ✔
B:304 [PRO] 0:2837 [U] B:338 [PRO] 5:13 [C] ✔
B:304 [PRO] 0:2838 [A] B:338 [PRO] 5:14 [A] ✔
B:337 [GLY] 0:2862 [G] B:373 [GLY] 5:37 [G] ✔
B:337 [GLY] 0:2863 [G] B:373 [GLY] 5:38 [G] ✔
B:154 [VAL] 0:2853 [U] B:176 [VAL] 5:28 [G] ❌ 6AZ3_B_5
B:285 [VAL] 0:2898 [G] B:319 [VAL] 5:108 [C] ❌ 6AZ3_B_5
B:283 [GLY] 0:2897 [C] B:317 [GLY] 5:107 [G] ❌ 6AZ3_B_5
B:336 [GLN] 0:2860 [G] B:372 [ILE] 5:35 [C] ❌ 6AZ3_B_5
B:155 [PRO] 0:2853 [U] B:177 [GLY] 5:28 [G] ❌ 6AZ3_B_5
B:22 [GLU] 0:2844 [C] B:25 [ILE] 5:20 [G] ❌ 6AZ3_B_5
B:157 [LYS] 0:2852 [A] B:179 [LYS] 5:27 [U] ❌ 6AZ3_B_5
B:112 [THR] 0:2846 [C] B:117 [ARG] 5:22 [G] ❌ 1YHQ_B_0
B:22 [GLU] 0:2846 [C] B:25 [ILE] 5:22 [G] ❌ 1YHQ_B_0
B:281 [ASP] 0:2862 [G] B:315 [MET] 5:37 [G] ❌ 1YHQ_B_0
B:305 [ASP] 0:2897 [C] B:339 [ARG] 5:107 [G] ❌ 1YHQ_B_0
B:306 [LYS] 0:2897 [C] B:340 [ARG] 5:107 [G] ❌ 1YHQ_B_0
B:113 [LEU] 0:2829 [G] B:118 [TYR] 5:5 [U] ❌ 1YHQ_0:2829 no longer at interface
B:18 [ARG] 0:2841 [A] B:21 [ARG] 5:17 [C] ❌ 1YHQ_0:2841 no longer at interface
B:306 [LYS] 0:2836 [G] B:340 [ARG] 5:12 [C] ❌ 1YHQ_0:2836 no longer at interface
B:153 [SER] 0:2899 [A] B:173 [ASN] 5:109 [C] ❌ 6AZ3_B:173 no longer at interface
B:114 [ASP] 0:2827 [A] B:129 [ALA] 5:3 [C] ❌ 6AZ3_B:129 no longer at interface
B:114 [ASP] 0:2828 [G] B:129 [ALA] 5:4 [G] ❌ 6AZ3_B:129 no longer at interface
B:308 [LEU] 0:2837 [U] B:342 [VAL] 5:13 [C] ❌ 6AZ3_B:342 no longer at interface
B:258 [GLY] 0:2839 [C] B:276 [GLY] 5:15 [A] ❌ 1YHQ_B:258 no longer at interface
B:291 [ASP] 0:2899 [A] B:325 [ARG] 5:109 [C] ❌ 1YHQ_B:291 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Alanine racemase-C 0.81 1.05 0.19 0.92 0.68 0.58 0.62 0.89 0.87 0.62 0.43


Other pairs involving 1YHQ_B_0 or 6AZ3_B_5

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_B_0 1YHQ_B_0 0.99 1.0 0.18 1.0 Alanine racemase-C Archaeal large subunit ribosomal RNA compare
1VQ8_B_0 6AZ3_B_5 0.88 0.81 1.06 0.19 Alanine racemase-C compare
1YHQ_B_0 7K00_d_a 0.63 0.91 2.07 0.29 Alanine racemase-C compare
1YHQ_B_0 4Y4O_1E_1A 0.64 0.9 2.2 0.29 Alanine racemase-C compare
1YHQ_B_0 6AZ3_B_5 0.89 0.81 1.05 0.19 Alanine racemase-C compare
1YHQ_B_0 6AZ3_B_1 0.59 0.77 1.82 0.33 Alanine racemase-C compare
1YHQ_B_0 7RYG_D_A 0.66 0.92 2.66 0.29 Alanine racemase-C compare
1YHQ_B_0 6S0Z_D_A 0.63 0.89 2.53 0.28 Alanine racemase-C compare
1YHQ_B_0 6AZ3_B_4 0.77 0.82 1.38 0.26 Alanine racemase-C compare
1YHQ_B_0 7O7Y_BB_B5 0.73 0.94 1.81 0.43 Alanine racemase-C compare
6AZ3_B_5 7O7Y_BB_B5 0.83 0.96 1.07 0.41 Alanine racemase-C compare