RNAprotDB

All interfaces > All interologs > Interface groups > group129 > 4Y4O_1E_1A

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

4Y4O_1E
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1E:8 [LYS] 1A:2692 [C] 3.19 1A:2740 [G] 99.0
1E:8 [LYS] 1A:2693 [C] 3.34 1A:2695 [C] 99.0
1E:11 [MET] 1A:2692 [C] 3.43 1A:2740 [G] 96.28
1E:11 [MET] 1A:2693 [C] 3.59 1A:2695 [C] 96.28
1E:11 [MET] 1A:2694 [U] 3.17 96.28
1E:12 [THR] 1A:2694 [U] 3.37 88.65
1E:13 [ARG] 1A:2694 [U] 3.33 79.03
1E:13 [ARG] 1A:2695 [C] 3.38 1A:2693 [C] 79.03
1E:22 [PRO] 1A:2694 [U] 3.69 73.59
1E:22 [PRO] 1A:2741 [U] 3.42 1A:2691 [A] 73.59
1E:22 [PRO] 1A:2742 [G] 4.8 1A:2690 [C] 73.59
1E:35 [GLN] 1A:2646 [G] 4.87 1A:2797 [C] 0.0
1E:35 [GLN] 1A:2797 [C] 3.33 1A:2646 [G] sugar:SC 0.0
1E:35 [GLN] 1A:2798 [C] 3.17 1A:2645 [G] sugar:SC 0.0
1E:37 [ARG] 1A:2646 [G] 3.69 1A:2797 [C] 0.0
1E:37 [ARG] 1A:2647 [C] 2.89 1A:2796 [G] base:SC 0.0
1E:37 [ARG] 1A:2796 [G] 3.75 1A:2647 [C] 0.0
1E:37 [ARG] 1A:2797 [C] 2.83 1A:2646 [G] base:SC, base:SC, sugar:SC 0.0
1E:37 [ARG] 1A:2798 [C] 4.5 1A:2645 [G] 0.0
1E:41 [LYS] 1A:2796 [G] 4.63 1A:2647 [C] 0.0
1E:41 [LYS] 1A:2797 [C] 3.13 1A:2646 [G] 0.0
1E:41 [LYS] 1A:2798 [C] 2.27 1A:2645 [G] 0.0
1E:42 [ASP] 1A:2796 [G] 4.22 1A:2647 [C] 0.0
1E:42 [ASP] 1A:2797 [C] 2.68 1A:2646 [G] sugar:SC 0.0
1E:44 [TYR] 1A:2648 [U] 2.78 1A:2795 [G] sugar:SC 0.0
1E:44 [TYR] 1A:2649 [U] 3.58 1A:2789 [A] 0.0
1E:48 [GLN] 1A:2647 [C] 2.83 1A:2796 [G] sugar:SC 70.23
1E:54 [GLN] 1A:2840 [G] 3.44 1A:2826 [C] 26.21
1E:55 [ASN] 1A:2843 [G] 4.87 62.6
1E:55 [ASN] 1A:2844 [G] 3.53 1A:2893 [A] 62.6
1E:57 [LYS] 1A:2843 [G] 3.87 0.0
1E:58 [ARG] 1A:2840 [G] 3.25 1A:2826 [C] 0.0
1E:58 [ARG] 1A:2841 [G] 3.01 1A:2825 [C] 0.0
1E:58 [ARG] 1A:2844 [G] 3.24 1A:2893 [A] 0.0
1E:58 [ARG] 1A:2845 [A] 3.2 0.0
1E:60 [ASN] 1A:2645 [G] 3.17 1A:2798 [C] sugar:SC 0.0
1E:60 [ASN] 1A:2821 [G] 3.58 1A:2899 [C] 0.0
1E:60 [ASN] 1A:2822 [G] 3.48 1A:2898 [C] 0.0
1E:61 [ARG] 1A:2799 [U] 4.1 1A:2644 [A] 0.0
1E:61 [ARG] 1A:2800 [C] 3.47 1A:2643 [G] sugar:SC 0.0
1E:61 [ARG] 1A:2801 [C] 2.79 1A:2642 [G] 0.0
1E:61 [ARG] 1A:2820 [A] 3.57 1A:2900 [G] 0.0
1E:61 [ARG] 1A:2821 [G] 3.07 1A:2899 [C] 0.0
1E:62 [PRO] 1A:2644 [A] 4.39 1A:2799 [U] 0.0
1E:62 [PRO] 1A:2645 [G] 3.63 1A:2798 [C] 0.0
1E:62 [PRO] 1A:2799 [U] 2.37 1A:2644 [A] sugar:BB 0.0
1E:62 [PRO] 1A:2800 [C] 3.12 1A:2643 [G] 0.0
1E:62 [PRO] 1A:2820 [A] 3.78 1A:2900 [G] 0.0
1E:62 [PRO] 1A:2821 [G] 3.54 1A:2899 [C] 0.0
1E:63 [LEU] 1A:2645 [G] 3.38 1A:2798 [C] 0.0
1E:63 [LEU] 1A:2646 [G] 3.57 1A:2797 [C] 0.0
1E:63 [LEU] 1A:2799 [U] 4.53 1A:2644 [A] 0.0
1E:64 [LYS] 1A:2799 [U] 4.82 1A:2644 [A] 0.0
1E:65 [GLY] 1A:2799 [U] 3.2 1A:2644 [A] 0.0
1E:65 [GLY] 1A:2800 [C] 4.32 1A:2643 [G] 0.0
1E:66 [HIS] 1A:2645 [G] 4.64 1A:2798 [C] 0.0
1E:66 [HIS] 1A:2798 [C] 2.79 1A:2645 [G] sugar:SC 0.0
1E:66 [HIS] 1A:2799 [U] 3.18 1A:2644 [A] 0.0
1E:69 [LYS] 1A:2798 [C] 3.61 1A:2645 [G] 0.0
1E:69 [LYS] 1A:2799 [U] 3.2 1A:2644 [A] 0.0
1E:76 [ARG] 1A:2839 [C] 3.06 1A:2827 [G] 51.82
1E:76 [ARG] 1A:2840 [G] 2.95 1A:2826 [C] 51.82
1E:78 [LEU] 1A:2646 [G] 3.7 1A:2797 [C] 40.88
1E:78 [LEU] 1A:2647 [C] 3.44 1A:2796 [G] 40.88
1E:78 [LEU] 1A:2648 [U] 4.66 1A:2795 [G] 40.88
1E:79 [ARG] 1A:2647 [C] 2.95 1A:2796 [G] 43.39
1E:79 [ARG] 1A:2648 [U] 3.57 1A:2795 [G] 43.39
1E:80 [GLU] 1A:2647 [C] 2.43 1A:2796 [G] sugar:SC 86.78
1E:80 [GLU] 1A:2648 [U] 2.79 1A:2795 [G] 86.78
1E:80 [GLU] 1A:2649 [U] 4.79 1A:2789 [A] 86.78
1E:82 [ARG] 1A:2649 [U] 2.94 1A:2789 [A] 59.87
1E:82 [ARG] 1A:2650 [G] 2.91 1A:2791 [A] 59.87
1E:101 [ARG] 1A:2743 [C] 3.17 1A:2689 [G] 6.86
1E:103 [ASP] 1A:2785 [C] 4.85 1A:2654 [G] 62.17
1E:105 [THR] 1A:2786 [C] 4.31 1A:2653 [G] 62.89
1E:107 [THR] 1A:2692 [C] 4.85 1A:2740 [G] 53.18
1E:108 [SER] 1A:2691 [A] 4.02 1A:2741 [U] 91.47
1E:108 [SER] 1A:2692 [C] 3.51 1A:2740 [G] 91.47
1E:108 [SER] 1A:2831 [A] 4.31 1A:2836 [A] 91.47
1E:109 [LYS] 1A:2691 [A] 4.69 1A:2741 [U] 92.3
1E:109 [LYS] 1A:2692 [C] 2.87 1A:2740 [G] 92.3
1E:109 [LYS] 1A:2693 [C] 2.55 1A:2695 [C] 92.3
1E:109 [LYS] 1A:2735 [G] 4.58 1A:2699 [U] 92.3
1E:109 [LYS] 1A:2736 [C] 2.72 1A:2698 [G] 92.3
1E:109 [LYS] 1A:2830 [A] 3.26 92.3
1E:109 [LYS] 1A:2831 [A] 3.57 1A:2836 [A] 92.3
1E:110 [GLY] 1A:2830 [A] 4.7 98.15
1E:110 [GLY] 1A:2831 [A] 3.01 1A:2836 [A] 98.15
1E:110 [GLY] 1A:2832 [G] 3.44 98.15
1E:111 [ARG] 1A:1701 [A] 4.23 84.38
1E:111 [ARG] 1A:2691 [A] 4.37 1A:2741 [U] 84.38
1E:111 [ARG] 1A:2692 [C] 2.43 1A:2740 [G] 84.38
1E:111 [ARG] 1A:2737 [C] 3.81 1A:2697 [G] 84.38
1E:111 [ARG] 1A:2831 [A] 4.65 1A:2836 [A] 84.38
1E:111 [ARG] 1A:2832 [G] 3.66 84.38
1E:112 [GLY] 1A:1701 [A] 4.5 98.87
1E:112 [GLY] 1A:2832 [G] 2.92 98.87
1E:112 [GLY] 1A:2833 [A] 3.46 98.87
1E:113 [PHE] 1A:1701 [A] 2.61 sugar:BB 93.57
1E:113 [PHE] 1A:1702 [A] 3.08 base/AA stacks 93.57
1E:113 [PHE] 1A:2070 [G] 3.63 1A:2632 [C] 93.57
1E:113 [PHE] 1A:2071 [G] 3.7 1A:2631 [C] 93.57
1E:113 [PHE] 1A:2832 [G] 4.32 93.57
1E:113 [PHE] 1A:2833 [A] 2.96 93.57
1E:114 [ALA] 1A:1701 [A] 4.76 78.66
1E:114 [ALA] 1A:1702 [A] 3.78 78.66
1E:115 [GLY] 1A:1702 [A] 3.16 98.12
1E:115 [GLY] 1A:1703 [C] 4.02 1A:2026 [G] 98.12
1E:116 [VAL] 1A:1702 [A] 4.74 77.91
1E:116 [VAL] 1A:1703 [C] 4.87 1A:2026 [G] 77.91
1E:117 [MET] 1A:1703 [C] 4.95 1A:2026 [G] 83.91
1E:117 [MET] 1A:2019 [G] 3.4 1A:1710 [C] 83.91
1E:117 [MET] 1A:2020 [G] 4.19 1A:1709 [C] 83.91
1E:118 [LYS] 1A:2020 [G] 4.37 1A:1709 [C] 91.94
1E:118 [LYS] 1A:2021 [C] 2.85 1A:1708 [G] 91.94
1E:118 [LYS] 1A:2736 [C] 4.13 1A:2698 [G] 91.94
1E:118 [LYS] 1A:2737 [C] 2.79 1A:2697 [G] 91.94
1E:119 [ARG] 1A:2632 [C] 2.68 1A:2070 [G] sugar:SC 94.08
1E:119 [ARG] 1A:2633 [A] 3.25 1A:2069 [U] 94.08
1E:119 [ARG] 1A:2690 [C] 4.55 1A:2742 [G] 94.08
1E:120 [TRP] 1A:2633 [A] 4.83 1A:2069 [U] 79.01
1E:120 [TRP] 1A:2690 [C] 4.54 1A:2742 [G] 79.01
1E:121 [ASN] 1A:2524 [C] 4.59 1A:2586 [G] 73.4
1E:121 [ASN] 1A:2689 [G] 3.9 1A:2743 [C] 73.4
1E:121 [ASN] 1A:2690 [C] 3.41 1A:2742 [G] 73.4
1E:122 [PHE] 1A:2019 [G] 4.47 1A:1710 [C] 88.37
1E:122 [PHE] 1A:2524 [C] 3.47 1A:2586 [G] 88.37
1E:122 [PHE] 1A:2525 [G] 3.64 1A:2583 [C] 88.37
1E:123 [ALA] 1A:2019 [G] 3.08 1A:1710 [C] 40.75
1E:123 [ALA] 1A:2523 [U] 3.66 1A:2587 [C] 40.75
1E:123 [ALA] 1A:2524 [C] 2.86 1A:2586 [G] 40.75
1E:124 [GLY] 1A:2523 [U] 3.52 1A:2587 [C] 80.71
1E:124 [GLY] 1A:2524 [C] 4.82 1A:2586 [G] 80.71
1E:125 [GLY] 1A:2016 [C] 4.35 1A:1713 [G] 78.88
1E:126 [PRO] 1A:2016 [C] 3.68 1A:1713 [G] 78.98
1E:126 [PRO] 1A:2522 [C] 4.62 1A:2590 [G] 78.98
1E:127 [ASP] 1A:2015 [U] 4.08 1A:1716 [A] 57.21
1E:127 [ASP] 1A:2016 [C] 2.99 1A:1713 [G] 57.21
1E:128 [SER] 1A:1722 [C] 2.78 base:SC, base:SC 86.5
1E:128 [SER] 1A:1723 [A] 4.17 86.5
1E:128 [SER] 1A:2015 [U] 3.24 1A:1716 [A] 86.5
1E:128 [SER] 1A:2016 [C] 4.79 1A:1713 [G] 86.5
1E:129 [HIS] 1A:790 [G] 4.99 1A:801 [C] 98.64
1E:129 [HIS] 1A:1717 [C] 2.65 base:SC 98.64
1E:129 [HIS] 1A:1718 [U] 3.8 98.64
1E:129 [HIS] 1A:1720 [U] 2.98 base:SC 98.64
1E:129 [HIS] 1A:1722 [C] 2.75 base:BB base/AA stacks 98.64
1E:129 [HIS] 1A:2015 [U] 3.69 1A:1716 [A] 98.64
1E:129 [HIS] 1A:2592 [U] 3.77 1A:2520 [G] 98.64
1E:129 [HIS] 1A:2593 [G] 4.37 98.64
1E:130 [GLY] 1A:790 [G] 3.17 1A:801 [C] 98.95
1E:130 [GLY] 1A:1722 [C] 4.69 98.95
1E:130 [GLY] 1A:2591 [C] 4.67 1A:2521 [G] 98.95
1E:130 [GLY] 1A:2592 [U] 3.13 1A:2520 [G] 98.95
1E:130 [GLY] 1A:2593 [G] 3.77 98.95
1E:131 [ALA] 1A:790 [G] 4.95 1A:801 [C] 81.91
1E:131 [ALA] 1A:791 [G] 4.32 1A:800 [C] 81.91
1E:131 [ALA] 1A:2591 [C] 3.64 1A:2521 [G] 81.91
1E:131 [ALA] 1A:2592 [U] 4.3 1A:2520 [G] 81.91
1E:132 [HIS] 1A:790 [G] 4.85 1A:801 [C] 57.02
1E:132 [HIS] 1A:791 [G] 2.61 1A:800 [C] 57.02
1E:132 [HIS] 1A:792 [G] 3.46 1A:797 [A] 57.02
1E:132 [HIS] 1A:2591 [C] 3.36 1A:2521 [G] sugar:BB 57.02
1E:132 [HIS] 1A:2592 [U] 3.54 1A:2520 [G] 57.02
1E:132 [HIS] 1A:2623 [U] 4.64 57.02
1E:132 [HIS] 1A:2624 [C] 4.96 57.02
1E:133 [LYS] 1A:791 [G] 4.16 1A:800 [C] 61.21
1E:133 [LYS] 1A:792 [G] 3.18 1A:797 [A] 61.21
1E:133 [LYS] 1A:793 [A] 4.96 1A:795 [G] 61.21
1E:133 [LYS] 1A:1704 [C] 3.37 1A:2025 [G] 61.21
1E:133 [LYS] 1A:1705 [C] 3.67 1A:2024 [G] 61.21
1E:133 [LYS] 1A:2624 [C] 4.12 61.21
1E:134 [ILE] 1A:1704 [C] 3.76 1A:2025 [G] 49.81
1E:134 [ILE] 1A:2590 [G] 3.45 1A:2522 [C] 49.81
1E:134 [ILE] 1A:2591 [C] 3.37 1A:2521 [G] 49.81
1E:135 [HIS] 1A:1704 [C] 3.11 1A:2025 [G] 74.68
1E:135 [HIS] 1A:1705 [C] 3.22 1A:2024 [G] 74.68
1E:136 [ARG] 1A:1703 [C] 2.84 1A:2026 [G] 98.28
1E:136 [ARG] 1A:1704 [C] 2.85 1A:2025 [G] 98.28
1E:136 [ARG] 1A:2020 [G] 3.11 1A:1709 [C] 98.28
1E:137 [HIS] 1A:1703 [C] 2.81 1A:2026 [G] sugar:SC 49.37
1E:137 [HIS] 1A:1704 [C] 3.86 1A:2025 [G] 49.37
1E:137 [HIS] 1A:2072 [C] 4.02 1A:2630 [G] 49.37
1E:137 [HIS] 1A:2073 [A] 2.83 49.37
1E:137 [HIS] 1A:2523 [U] 4.27 1A:2587 [C] 49.37
1E:138 [PRO] 1A:2072 [C] 3.69 1A:2630 [G] 67.33
1E:138 [PRO] 1A:2073 [A] 3.94 67.33
1E:138 [PRO] 1A:2523 [U] 2.5 1A:2587 [C] 67.33
1E:138 [PRO] 1A:2524 [C] 3.24 1A:2586 [G] sugar:BB 67.33
1E:139 [GLY] 1A:2073 [A] 4.0 97.01
1E:139 [GLY] 1A:2074 [G] 4.44 1A:2629 [C] 97.01
1E:139 [GLY] 1A:2523 [U] 3.5 1A:2587 [C] 97.01
1E:139 [GLY] 1A:2524 [C] 4.95 1A:2586 [G] 97.01
1E:139 [GLY] 1A:2590 [G] 3.66 1A:2522 [C] 97.01
1E:140 [SER] 1A:2074 [G] 3.42 1A:2629 [C] 94.24
1E:140 [SER] 1A:2523 [U] 2.88 1A:2587 [C] base:BB 94.24
1E:140 [SER] 1A:2524 [C] 3.36 1A:2586 [G] sugar:BB 94.24
1E:140 [SER] 1A:2586 [G] 3.52 1A:2524 [C] 94.24
1E:140 [SER] 1A:2587 [C] 2.84 1A:2523 [U] sugar:SC 94.24
1E:140 [SER] 1A:2590 [G] 3.76 1A:2522 [C] 94.24
1E:141 [ILE] 1A:2072 [C] 3.3 1A:2630 [G] 85.13
1E:141 [ILE] 1A:2073 [A] 3.42 85.13
1E:141 [ILE] 1A:2074 [G] 2.94 1A:2629 [C] 85.13
1E:141 [ILE] 1A:2524 [C] 4.79 1A:2586 [G] 85.13
1E:141 [ILE] 1A:2630 [G] 3.54 1A:2072 [C] 85.13
1E:142 [GLY] 1A:2074 [G] 3.28 1A:2629 [C] 93.7
1E:142 [GLY] 1A:2524 [C] 4.96 1A:2586 [G] 93.7
1E:142 [GLY] 1A:2586 [G] 2.88 1A:2524 [C] base:BB 93.7
1E:142 [GLY] 1A:2587 [C] 3.55 1A:2523 [U] 93.7
1E:143 [ASN] 1A:2074 [G] 3.3 1A:2629 [C] 49.19
1E:143 [ASN] 1A:2075 [G] 4.46 1A:2628 [C] 49.19
1E:143 [ASN] 1A:2525 [G] 2.89 1A:2583 [C] base:SC 49.19
1E:143 [ASN] 1A:2583 [C] 3.66 1A:2525 [G] 49.19
1E:143 [ASN] 1A:2584 [A] 3.5 49.19
1E:143 [ASN] 1A:2586 [G] 3.03 1A:2524 [C] base:SC 49.19
1E:143 [ASN] 1A:2587 [C] 3.19 1A:2523 [U] 49.19
1E:144 [ARG] 1A:2074 [G] 2.97 1A:2629 [C] sugar:BB 47.34
1E:144 [ARG] 1A:2075 [G] 3.25 1A:2628 [C] 47.34
1E:144 [ARG] 1A:2516 [U] 3.52 1A:2464 [C] sugar:SC 47.34
1E:144 [ARG] 1A:2518 [U] 2.75 47.34
1E:144 [ARG] 1A:2584 [A] 2.96 sugar:SC base/AA stacks 47.34
1E:144 [ARG] 1A:2586 [G] 3.31 1A:2524 [C] 47.34
1E:144 [ARG] 1A:2587 [C] 3.45 1A:2523 [U] 47.34
1E:145 [LYS] 1A:597 [C] 2.49 base:SC, base:SC 66.72
1E:145 [LYS] 1A:2054 [G] 3.06 66.72
1E:145 [LYS] 1A:2055 [A] 4.75 1A:585 [U] 66.72
1E:145 [LYS] 1A:2075 [G] 3.98 1A:2628 [C] 66.72
1E:145 [LYS] 1A:2076 [A] 3.84 1A:2627 [U] 66.72
1E:145 [LYS] 1A:2077 [C] 3.92 1A:2511 [C] 66.72
1E:145 [LYS] 1A:2584 [A] 3.24 66.72
1E:146 [THR] 1A:1176 [U] 3.72 45.99
1E:146 [THR] 1A:2054 [G] 3.09 base:SC 45.99
1E:146 [THR] 1A:2583 [C] 2.49 1A:2525 [G] sugar:BB 45.99
1E:146 [THR] 1A:2584 [A] 3.28 45.99
1E:147 [PRO] 1A:1176 [U] 3.25 85.43
1E:147 [PRO] 1A:2047 [C] 3.94 1A:2060 [G] 85.43
1E:147 [PRO] 1A:2074 [G] 4.82 1A:2629 [C] 85.43
1E:147 [PRO] 1A:2583 [C] 4.1 1A:2525 [G] 85.43
1E:148 [GLY] 1A:2074 [G] 3.07 1A:2629 [C] base:BB 78.53
1E:148 [GLY] 1A:2075 [G] 3.28 1A:2628 [C] 78.53
1E:149 [ARG] 1A:1176 [U] 2.56 base:SC, base:SC 86.73
1E:149 [ARG] 1A:2046 [G] 3.15 1A:2061 [C] 86.73
1E:149 [ARG] 1A:2047 [C] 2.95 1A:2060 [G] 86.73
1E:149 [ARG] 1A:2074 [G] 3.41 1A:2629 [C] 86.73
1E:149 [ARG] 1A:2075 [G] 4.43 1A:2628 [C] 86.73
1E:149 [ARG] 1A:2630 [G] 3.72 1A:2072 [C] 86.73
1E:150 [VAL] 1A:2074 [G] 3.55 1A:2629 [C] 90.52
1E:150 [VAL] 1A:2630 [G] 2.87 1A:2072 [C] sugar:BB, sugar:BB 90.52
1E:150 [VAL] 1A:2631 [C] 3.11 1A:2071 [G] 90.52
1E:151 [TYR] 1A:2525 [G] 3.34 1A:2583 [C] base:SC 1.86
1E:151 [TYR] 1A:2526 [U] 3.45 1A:2582 [G] 1.86
1E:151 [TYR] 1A:2631 [C] 3.33 1A:2071 [G] 1.86
1E:151 [TYR] 1A:2632 [C] 4.88 1A:2070 [G] 1.86
1E:152 [LYS] 1A:2631 [C] 2.7 1A:2071 [G] 86.14
1E:152 [LYS] 1A:2632 [C] 3.66 1A:2070 [G] 86.14
1E:153 [GLY] 1A:2631 [C] 3.68 1A:2071 [G] 92.87
1E:153 [GLY] 1A:2632 [C] 2.72 1A:2070 [G] 92.87
1E:154 [LYS] 1A:2524 [C] 3.55 1A:2586 [G] 69.87
1E:154 [LYS] 1A:2525 [G] 3.12 1A:2583 [C] sugar:SC 69.87
1E:154 [LYS] 1A:2631 [C] 3.35 1A:2071 [G] 69.87
1E:154 [LYS] 1A:2632 [C] 3.19 1A:2070 [G] 69.87
1E:155 [LYS] 1A:2525 [G] 4.0 1A:2583 [C] 76.26
1E:155 [LYS] 1A:2656 [G] 4.87 76.26
1E:156 [MET] 1A:2071 [G] 3.49 1A:2631 [C] 91.78
1E:156 [MET] 1A:2072 [C] 3.77 1A:2630 [G] 91.78
1E:156 [MET] 1A:2630 [G] 4.65 1A:2072 [C] 91.78
1E:156 [MET] 1A:2631 [C] 3.16 1A:2071 [G] 91.78
1E:156 [MET] 1A:2632 [C] 3.22 1A:2070 [G] 91.78
1E:157 [ALA] 1A:1702 [A] 3.52 75.92
1E:157 [ALA] 1A:2070 [G] 4.52 1A:2632 [C] 75.92
1E:157 [ALA] 1A:2071 [G] 4.22 1A:2631 [C] 75.92
1E:157 [ALA] 1A:2632 [C] 2.89 1A:2070 [G] 75.92
1E:157 [ALA] 1A:2633 [A] 4.56 1A:2069 [U] 75.92
1E:158 [GLY] 1A:2070 [G] 4.91 1A:2632 [C] 94.21
1E:158 [GLY] 1A:2632 [C] 4.21 1A:2070 [G] 94.21
1E:158 [GLY] 1A:2633 [A] 3.8 1A:2069 [U] 94.21
1E:159 [HIS] 1A:2633 [A] 2.83 1A:2069 [U] sugar:BB 77.46
1E:159 [HIS] 1A:2634 [C] 3.39 1A:2068 [G] 77.46
1E:159 [HIS] 1A:2832 [G] 3.14 77.46
1E:159 [HIS] 1A:2833 [A] 2.74 77.46
1E:159 [HIS] 1A:2835 [C] 4.7 77.46
1E:160 [TYR] 1A:2690 [C] 5.0 1A:2742 [G] 82.48
1E:160 [TYR] 1A:2691 [A] 2.67 1A:2741 [U] 82.48
1E:160 [TYR] 1A:2832 [G] 3.99 82.48
1E:161 [GLY] 1A:2832 [G] 4.41 98.12
1E:162 [ALA] 1A:2831 [A] 3.58 1A:2836 [A] 58.01
1E:162 [ALA] 1A:2832 [G] 4.09 58.01
1E:163 [GLU] 1A:2634 [C] 4.55 1A:2068 [G] 45.47
1E:163 [GLU] 1A:2787 [C] 4.43 1A:2652 [G] 45.47
1E:164 [ARG] 1A:2786 [C] 2.79 1A:2653 [G] 39.4
1E:164 [ARG] 1A:2787 [C] 3.61 1A:2652 [G] 39.4
1E:165 [VAL] 1A:2690 [C] 3.61 1A:2742 [G] 71.45
1E:165 [VAL] 1A:2691 [A] 3.91 1A:2741 [U] 71.45
1E:165 [VAL] 1A:2786 [C] 4.42 1A:2653 [G] 71.45
1E:166 [THR] 1A:2785 [C] 3.33 1A:2654 [G] 93.05
1E:166 [THR] 1A:2786 [C] 2.5 1A:2653 [G] 93.05
1E:167 [VAL] 1A:2691 [A] 4.16 1A:2741 [U] 70.73
1E:167 [VAL] 1A:2742 [G] 4.19 1A:2690 [C] 70.73
1E:167 [VAL] 1A:2743 [C] 4.24 1A:2689 [G] 70.73
1E:168 [MET] 1A:2743 [C] 2.76 1A:2689 [G] sugar:BB 59.5
1E:168 [MET] 1A:2744 [G] 4.39 1A:2688 [C] 59.5
1E:168 [MET] 1A:2784 [C] 3.35 1A:2655 [G] 59.5
1E:168 [MET] 1A:2785 [C] 3.62 1A:2654 [G] 59.5
1E:169 [ASN] 1A:2743 [C] 3.47 1A:2689 [G] 80.65
1E:169 [ASN] 1A:2744 [G] 2.77 1A:2688 [C] 80.65
1E:170 [LEU] 1A:2742 [G] 3.38 1A:2690 [C] 74.84
1E:170 [LEU] 1A:2743 [C] 3.77 1A:2689 [G] 74.84
1E:185 [LYS] 1A:2742 [G] 3.29 1A:2690 [C] sugar:BB 66.99
1E:185 [LYS] 1A:2743 [C] 3.54 1A:2689 [G] 66.99
1E:186 [GLY] 1A:2741 [U] 4.88 1A:2691 [A] 98.61
1E:186 [GLY] 1A:2742 [G] 3.41 1A:2690 [C] 98.61
1E:187 [ALA] 1A:2691 [A] 4.0 1A:2741 [U] 72.09
1E:187 [ALA] 1A:2692 [C] 3.54 1A:2740 [G] 72.09
1E:187 [ALA] 1A:2741 [U] 4.64 1A:2691 [A] 72.09
1E:187 [ALA] 1A:2742 [G] 3.84 1A:2690 [C] sugar:BB 72.09
1E:188 [VAL] 1A:2691 [A] 3.9 1A:2741 [U] 84.19
1E:188 [VAL] 1A:2692 [C] 3.28 1A:2740 [G] 84.19
1E:189 [PRO] 1A:2691 [A] 3.52 1A:2741 [U] 98.41
1E:189 [PRO] 1A:2692 [C] 3.8 1A:2740 [G] 98.41
1E:190 [GLY] 1A:2691 [A] 4.17 1A:2741 [U] 98.84
1E:190 [GLY] 1A:2692 [C] 2.88 1A:2740 [G] 98.84
1E:190 [GLY] 1A:2693 [C] 4.05 1A:2695 [C] 98.84
1E:191 [PRO] 1A:2693 [C] 4.94 1A:2695 [C] 43.09
1E:191 [PRO] 1A:2830 [A] 3.27 43.09
1E:191 [PRO] 1A:2831 [A] 4.79 1A:2836 [A] 43.09
1E:192 [ASN] 1A:2693 [C] 4.12 1A:2695 [C] 41.15
1E:192 [ASN] 1A:2830 [A] 3.43 41.15
1E:199 [ARG] 1A:2785 [C] 4.48 1A:2654 [G] 37.45
1E:202 [LYS] 1A:2746 [A] 3.3 base:BB 0.62
1E:202 [LYS] 1A:2784 [C] 3.8 1A:2655 [G] 0.62
1E:202 [LYS] 1A:2785 [C] 3.1 1A:2654 [G] 0.62
1E:203 [LYS] 1A:2744 [G] 3.54 1A:2688 [C] 69.18
1E:203 [LYS] 1A:2745 [G] 2.38 1A:2687 [A] 69.18
1E:203 [LYS] 1A:2746 [A] 3.53 69.18
1E:203 [LYS] 1A:2784 [C] 4.76 1A:2655 [G] 69.18
1E:204 [ALA] 1A:2746 [A] 3.19 base:BB 70.52
1E:204 [ALA] 1A:2747 [A] 4.96 1A:2783 [G] 70.52

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group129 4Y4O_1E_1A 1E: 50s ribosomal protein l3, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHN8 Alanine racemase-C Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_B_0 4Y4O_1E_1A 0.64 0.9 2.32 0.29 Alanine racemase-C compare
1YHQ_B_0 4Y4O_1E_1A 0.64 0.9 2.2 0.29 Alanine racemase-C compare
4Y4O_1E_1A 6S0Z_D_A 0.88 0.97 1.32 0.54 Alanine racemase-C Bacterial large subunit ribosomal RNA compare
4Y4O_1E_1A 7RYG_D_A 0.89 0.96 1.71 0.58 Alanine racemase-C Bacterial large subunit ribosomal RNA compare
4Y4O_1E_1A 6AZ3_B_4 0.55 0.58 2.75 0.17 Alanine racemase-C compare
4Y4O_1E_1A 7K00_d_a 0.92 0.97 0.69 0.64 Alanine racemase-C Bacterial large subunit ribosomal RNA compare
4Y4O_1E_1A 7OF0_E_A 0.76 0.91 1.65 0.36 Alanine racemase-C Bacterial large subunit ribosomal RNA compare
4Y4O_1E_1A 7O7Y_BB_B5 0.62 0.9 2.62 0.26 Alanine racemase-C compare
4Y4O_1E_1A 6AZ3_B_1 0.61 0.66 1.78 0.17 Alanine racemase-C compare