Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6AZ3_B
|
6AZ3_1
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| B:245 [ARG] | 1:924 [C] | 4.48 | 1:938 [G] | 80.9 | ||
| B:245 [ARG] | 1:925 [U] | 3.6 | 80.9 | |||
| B:246 [LYS] | 1:925 [U] | 3.09 | 92.7 | |||
| B:248 [HIS] | 1:927 [A2M] | 3.46 | 1:936 [U] | 81.2 | ||
| B:248 [HIS] | 1:929 [G] | 3.24 | 81.2 | |||
| B:261 [HIS] | 1:1367 [U] | 3.7 | 45.3 | |||
| B:262 [PRO] | 1:1367 [U] | 3.76 | 86.0 | |||
| B:263 [ALA] | 1:1367 [U] | 4.79 | 56.2 | |||
| B:264 [ARG] | 1:1367 [U] | 3.44 | base:SC | 57.9 | ||
| B:264 [ARG] | 1:1368 [G] | 3.68 | base:SC | 57.9 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group129 | 6AZ3_B_1 | B: Ribosomal protein ul3, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) | Alanine racemase-C | Eukaryotic large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 6
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 1YHQ_B_0 | 6AZ3_B_1 | 0.59 | 0.77 | 1.82 | 0.33 | Alanine racemase-C | compare | |
| 6AZ3_B_1 | 6S0Z_D_A | 0.76 | 0.67 | 1.81 | 0.29 | Alanine racemase-C | compare | |
| 6AZ3_B_1 | 7RYG_D_A | 0.73 | 0.65 | 1.88 | 0.29 | Alanine racemase-C | compare | |
| 6AZ3_B_1 | 7K00_d_a | 0.61 | 0.66 | 1.8 | 0.14 | Alanine racemase-C | compare | |
| 1VQ8_B_0 | 6AZ3_B_1 | 0.58 | 0.77 | 1.75 | 0.33 | Alanine racemase-C | compare | |
| 4Y4O_1E_1A | 6AZ3_B_1 | 0.61 | 0.66 | 1.78 | 0.17 | Alanine racemase-C | compare |